Incidental Mutation 'R5414:Vmn2r3'
ID 427620
Institutional Source Beutler Lab
Gene Symbol Vmn2r3
Ensembl Gene ENSMUSG00000091572
Gene Name vomeronasal 2, receptor 3
Synonyms EG637004
MMRRC Submission 042983-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R5414 (G1)
Quality Score 225
Status Validated
Chromosome 3
Chromosomal Location 64166225-64197130 bp(-) (GRCm39)
Type of Mutation nonsense
DNA Base Change (assembly) T to A at 64166978 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Arginine to Stop codon at position 718 (R718*)
Ref Sequence ENSEMBL: ENSMUSP00000134891 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000170244] [ENSMUST00000176328]
AlphaFold H3BJ88
Predicted Effect probably null
Transcript: ENSMUST00000170244
AA Change: R690*
SMART Domains Protein: ENSMUSP00000126165
Gene: ENSMUSG00000091572
AA Change: R690*

DomainStartEndE-ValueType
Pfam:ANF_receptor 64 479 4e-64 PFAM
Pfam:NCD3G 521 574 1.1e-17 PFAM
Pfam:7tm_3 605 842 2.9e-75 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000176328
AA Change: R718*
SMART Domains Protein: ENSMUSP00000134891
Gene: ENSMUSG00000091572
AA Change: R718*

DomainStartEndE-ValueType
signal peptide 1 22 N/A INTRINSIC
Pfam:ANF_receptor 92 507 9.5e-66 PFAM
Pfam:NCD3G 549 602 8.8e-17 PFAM
Pfam:7tm_3 635 869 8.5e-48 PFAM
Meta Mutation Damage Score 0.9755 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.1%
  • 20x: 94.9%
Validation Efficiency 100% (55/55)
Allele List at MGI
Other mutations in this stock
Total: 51 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca5 A G 11: 110,205,448 (GRCm39) S278P probably damaging Het
Acan A G 7: 78,750,736 (GRCm39) T1836A probably benign Het
Akr1c18 T A 13: 4,186,734 (GRCm39) D238V probably damaging Het
Akt3 A G 1: 176,877,817 (GRCm39) V317A probably damaging Het
Atp2b2 G A 6: 113,819,102 (GRCm39) P64S probably damaging Het
Atr A G 9: 95,752,757 (GRCm39) N609S probably benign Het
Bcat1 A G 6: 144,961,173 (GRCm39) probably null Het
C1rl C T 6: 124,485,427 (GRCm39) A266V probably damaging Het
Cd34 A G 1: 194,630,219 (GRCm39) E51G probably benign Het
Celsr3 A G 9: 108,717,241 (GRCm39) E2161G possibly damaging Het
Clec2h G T 6: 128,651,749 (GRCm39) A153S probably benign Het
Cnih1 T C 14: 47,016,440 (GRCm39) T105A probably benign Het
Coro1c A G 5: 113,986,607 (GRCm39) I279T possibly damaging Het
Ddx11 A G 17: 66,455,763 (GRCm39) T721A probably benign Het
Fbn2 C A 18: 58,226,477 (GRCm39) A766S probably damaging Het
Focad C T 4: 88,328,939 (GRCm39) probably benign Het
Galnt16 A T 12: 80,630,822 (GRCm39) D300V probably damaging Het
Gbp2b T C 3: 142,304,852 (GRCm39) L96P probably damaging Het
Gm10192 T C 4: 97,071,346 (GRCm39) S20G probably null Het
Gm10288 T C 3: 146,544,717 (GRCm39) noncoding transcript Het
Gm4181 C T 14: 51,873,047 (GRCm39) probably null Het
Gm6327 T A 16: 12,578,222 (GRCm39) noncoding transcript Het
Hfm1 A G 5: 107,049,942 (GRCm39) I409T probably damaging Het
Ibtk T C 9: 85,608,742 (GRCm39) E390G possibly damaging Het
Ifit1bl1 T A 19: 34,571,324 (GRCm39) I378F probably damaging Het
Kcnh4 T C 11: 100,637,722 (GRCm39) D645G probably damaging Het
Krt33b T C 11: 99,920,612 (GRCm39) T14A probably benign Het
Lrch3 T A 16: 32,806,335 (GRCm39) probably null Het
Mycbp2 A T 14: 103,543,697 (GRCm39) L226H probably damaging Het
Myo1e C A 9: 70,229,640 (GRCm39) probably null Het
Nos1ap T A 1: 170,176,968 (GRCm39) K145M probably damaging Het
Nploc4 A T 11: 120,304,469 (GRCm39) Y251N probably damaging Het
Or4b12 T C 2: 90,096,046 (GRCm39) T243A probably benign Het
Pdk4 T C 6: 5,485,499 (GRCm39) I397V probably benign Het
Pdzrn3 C T 6: 101,130,272 (GRCm39) D515N probably damaging Het
Pgm5 A G 19: 24,686,689 (GRCm39) I506T probably damaging Het
Pgs1 T G 11: 117,905,502 (GRCm39) I499S probably damaging Het
Ppp6r3 A G 19: 3,557,330 (GRCm39) S253P probably damaging Het
Prag1 C G 8: 36,606,776 (GRCm39) P839R probably benign Het
Rin3 C T 12: 102,356,116 (GRCm39) Q806* probably null Het
Ros1 T C 10: 52,031,189 (GRCm39) D484G probably damaging Het
Scamp5 A G 9: 57,354,507 (GRCm39) V49A probably benign Het
Sis C A 3: 72,859,826 (GRCm39) V310L probably benign Het
Svep1 T C 4: 58,206,322 (GRCm39) T19A possibly damaging Het
Tcstv2b A C 13: 120,373,872 (GRCm39) D139E probably damaging Het
Tenm3 A C 8: 48,689,390 (GRCm39) S2066A probably damaging Het
Thra A G 11: 98,651,783 (GRCm39) I102V probably benign Het
Trim30a A C 7: 104,060,348 (GRCm39) V476G probably damaging Het
Washc4 A G 10: 83,391,967 (GRCm39) T218A possibly damaging Het
Xrcc1 A G 7: 24,269,643 (GRCm39) Y401C probably damaging Het
Zfp629 T C 7: 127,210,454 (GRCm39) T452A probably damaging Het
Other mutations in Vmn2r3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01019:Vmn2r3 APN 3 64,167,304 (GRCm39) missense probably damaging 1.00
IGL01468:Vmn2r3 APN 3 64,182,382 (GRCm39) missense possibly damaging 0.57
IGL02032:Vmn2r3 APN 3 64,182,476 (GRCm39) missense possibly damaging 0.95
IGL02405:Vmn2r3 APN 3 64,178,620 (GRCm39) splice site probably benign
IGL02640:Vmn2r3 APN 3 64,194,816 (GRCm39) missense probably benign
IGL02719:Vmn2r3 APN 3 64,183,031 (GRCm39) missense probably damaging 1.00
IGL02746:Vmn2r3 APN 3 64,167,239 (GRCm39) missense possibly damaging 0.74
IGL02952:Vmn2r3 APN 3 64,186,256 (GRCm39) missense probably damaging 1.00
IGL03390:Vmn2r3 APN 3 64,182,767 (GRCm39) missense possibly damaging 0.55
G1citation:Vmn2r3 UTSW 3 64,194,876 (GRCm39) missense probably benign 0.30
R0023:Vmn2r3 UTSW 3 64,182,787 (GRCm39) missense probably damaging 0.99
R0433:Vmn2r3 UTSW 3 64,183,054 (GRCm39) missense possibly damaging 0.51
R0647:Vmn2r3 UTSW 3 64,183,046 (GRCm39) missense probably damaging 1.00
R1071:Vmn2r3 UTSW 3 64,182,697 (GRCm39) missense possibly damaging 0.79
R1536:Vmn2r3 UTSW 3 64,182,538 (GRCm39) missense probably damaging 1.00
R1806:Vmn2r3 UTSW 3 64,194,810 (GRCm39) missense possibly damaging 0.73
R1806:Vmn2r3 UTSW 3 64,182,893 (GRCm39) missense probably benign 0.03
R1852:Vmn2r3 UTSW 3 64,166,815 (GRCm39) missense probably damaging 1.00
R1868:Vmn2r3 UTSW 3 64,166,537 (GRCm39) missense probably damaging 1.00
R2072:Vmn2r3 UTSW 3 64,182,493 (GRCm39) missense possibly damaging 0.87
R2240:Vmn2r3 UTSW 3 64,166,483 (GRCm39) missense probably benign 0.44
R2446:Vmn2r3 UTSW 3 64,182,733 (GRCm39) missense probably damaging 0.98
R4133:Vmn2r3 UTSW 3 64,183,138 (GRCm39) missense probably damaging 0.99
R4159:Vmn2r3 UTSW 3 64,194,850 (GRCm39) nonsense probably null
R4494:Vmn2r3 UTSW 3 64,182,692 (GRCm39) missense probably damaging 1.00
R4860:Vmn2r3 UTSW 3 64,183,022 (GRCm39) missense probably benign 0.00
R4895:Vmn2r3 UTSW 3 64,167,182 (GRCm39) missense probably benign 0.00
R4912:Vmn2r3 UTSW 3 64,166,618 (GRCm39) missense probably damaging 1.00
R5018:Vmn2r3 UTSW 3 64,178,774 (GRCm39) missense probably benign
R5033:Vmn2r3 UTSW 3 64,167,220 (GRCm39) missense probably benign 0.09
R5126:Vmn2r3 UTSW 3 64,166,740 (GRCm39) missense probably damaging 1.00
R5148:Vmn2r3 UTSW 3 64,186,247 (GRCm39) missense probably damaging 1.00
R5785:Vmn2r3 UTSW 3 64,166,444 (GRCm39) missense possibly damaging 0.89
R5905:Vmn2r3 UTSW 3 64,182,698 (GRCm39) missense probably benign 0.19
R5992:Vmn2r3 UTSW 3 64,167,068 (GRCm39) missense probably damaging 1.00
R6028:Vmn2r3 UTSW 3 64,182,698 (GRCm39) missense probably benign 0.19
R6331:Vmn2r3 UTSW 3 64,186,182 (GRCm39) missense probably damaging 1.00
R6378:Vmn2r3 UTSW 3 64,182,517 (GRCm39) missense probably damaging 1.00
R6775:Vmn2r3 UTSW 3 64,183,039 (GRCm39) missense possibly damaging 0.88
R6822:Vmn2r3 UTSW 3 64,194,876 (GRCm39) missense probably benign 0.30
R6826:Vmn2r3 UTSW 3 64,182,327 (GRCm39) nonsense probably null
R6886:Vmn2r3 UTSW 3 64,166,927 (GRCm39) missense probably damaging 1.00
R6971:Vmn2r3 UTSW 3 64,166,668 (GRCm39) missense probably damaging 0.99
R7154:Vmn2r3 UTSW 3 64,194,732 (GRCm39) missense probably benign 0.02
R7192:Vmn2r3 UTSW 3 64,167,364 (GRCm39) missense probably benign 0.24
R7282:Vmn2r3 UTSW 3 64,168,825 (GRCm39) missense possibly damaging 0.90
R7472:Vmn2r3 UTSW 3 64,182,953 (GRCm39) missense probably benign 0.00
R7563:Vmn2r3 UTSW 3 64,182,770 (GRCm39) missense possibly damaging 0.60
R7726:Vmn2r3 UTSW 3 64,182,939 (GRCm39) nonsense probably null
R7966:Vmn2r3 UTSW 3 64,186,235 (GRCm39) missense probably damaging 0.99
R8025:Vmn2r3 UTSW 3 64,182,871 (GRCm39) missense possibly damaging 0.91
R8050:Vmn2r3 UTSW 3 64,178,714 (GRCm39) missense probably damaging 0.99
R8300:Vmn2r3 UTSW 3 64,182,347 (GRCm39) missense probably benign 0.00
R8402:Vmn2r3 UTSW 3 64,178,617 (GRCm39) splice site probably benign
R8486:Vmn2r3 UTSW 3 64,186,370 (GRCm39) missense probably damaging 1.00
R8523:Vmn2r3 UTSW 3 64,182,311 (GRCm39) missense probably benign 0.03
R8678:Vmn2r3 UTSW 3 64,166,896 (GRCm39) missense possibly damaging 0.76
R8885:Vmn2r3 UTSW 3 64,182,383 (GRCm39) missense probably benign 0.00
R8886:Vmn2r3 UTSW 3 64,194,892 (GRCm39) missense possibly damaging 0.47
R8905:Vmn2r3 UTSW 3 64,166,695 (GRCm39) missense probably damaging 0.99
R8937:Vmn2r3 UTSW 3 64,166,673 (GRCm39) missense probably damaging 1.00
R8955:Vmn2r3 UTSW 3 64,168,803 (GRCm39) missense possibly damaging 0.56
R9172:Vmn2r3 UTSW 3 64,186,403 (GRCm39) missense possibly damaging 0.79
R9485:Vmn2r3 UTSW 3 64,183,046 (GRCm39) missense probably damaging 1.00
R9575:Vmn2r3 UTSW 3 64,178,735 (GRCm39) missense probably benign 0.01
R9618:Vmn2r3 UTSW 3 64,178,724 (GRCm39) missense probably damaging 0.98
X0022:Vmn2r3 UTSW 3 64,182,389 (GRCm39) missense probably damaging 1.00
X0022:Vmn2r3 UTSW 3 64,178,669 (GRCm39) missense possibly damaging 0.62
Predicted Primers PCR Primer
(F):5'- GCTGACGAGCCATAAAGGTTG -3'
(R):5'- GAGCTGAGCTTCCTCATTCAG -3'

Sequencing Primer
(F):5'- AACTCTACAGAACCTTCATTGCATTC -3'
(R):5'- CAGATATCTCTGGTTATCACAGTGC -3'
Posted On 2016-09-01