Mutagenetix > Incidental Mutation

Incidental Mutation 'R5484:Safb2'

430341

Institutional Source

Beutler Lab

Gene Symbol

Safb2

Ensembl Gene

ENSMUSG00000042625

Gene Name

scaffold attachment factor B2

Synonyms

MMRRC Submission

043045-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.581) question?

Stock #

R5484 (G1)

Quality Score

103

Status

Validated

Chromosome

Chromosomal Location

56867965-56891585 bp(-) (GRCm39)

Type of Mutation

intron

DNA Base Change (assembly)

T to C at 56882346 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000116363 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000075510] [ENSMUST00000131056] [ENSMUST00000133604] [ENSMUST00000144255] [ENSMUST00000155983]

AlphaFold

Q80YR5

Predicted Effect

probably benign
Transcript: ENSMUST00000075510

SMART Domains

Protein: ENSMUSP00000074953
Gene: ENSMUSG00000042625

Domain	Start	End	E-Value	Type
SAP	25	59	8.21e-11	SMART
low complexity region	91	104	N/A	INTRINSIC
low complexity region	162	173	N/A	INTRINSIC
coiled coil region	262	285	N/A	INTRINSIC
low complexity region	286	294	N/A	INTRINSIC
low complexity region	318	335	N/A	INTRINSIC
RRM	452	525	1.33e-19	SMART
low complexity region	557	578	N/A	INTRINSIC
low complexity region	631	645	N/A	INTRINSIC
coiled coil region	658	772	N/A	INTRINSIC
low complexity region	798	815	N/A	INTRINSIC
low complexity region	920	944	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000124457

Predicted Effect

probably benign
Transcript: ENSMUST00000131056

SMART Domains

Protein: ENSMUSP00000120750
Gene: ENSMUSG00000042625

Domain	Start	End	E-Value	Type
low complexity region	44	65	N/A	INTRINSIC
low complexity region	118	133	N/A	INTRINSIC
coiled coil region	146	260	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000133604

SMART Domains

Protein: ENSMUSP00000119324
Gene: ENSMUSG00000042625

Domain	Start	End	E-Value	Type
SAP	25	59	8.21e-11	SMART
low complexity region	91	104	N/A	INTRINSIC
low complexity region	162	173	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000134497

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000134741

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000140037

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000146958

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000156640

SMART Domains

Protein: ENSMUSP00000118127
Gene: ENSMUSG00000042625

Domain	Start	End	E-Value	Type
low complexity region	62	86	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000146070

Predicted Effect

probably benign
Transcript: ENSMUST00000144255

SMART Domains

Protein: ENSMUSP00000123673
Gene: ENSMUSG00000042625

Domain	Start	End	E-Value	Type
SAP	25	59	8.21e-11	SMART
low complexity region	91	104	N/A	INTRINSIC
low complexity region	162	173	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000155983

SMART Domains

Protein: ENSMUSP00000116363
Gene: ENSMUSG00000042625

Domain	Start	End	E-Value	Type
SAP	25	59	8.21e-11	SMART
low complexity region	91	104	N/A	INTRINSIC
low complexity region	162	173	N/A	INTRINSIC

Coding Region Coverage

1x: 98.3%
3x: 97.3%
10x: 95.3%
20x: 91.4%

Validation Efficiency

97% (76/78)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene, along with its paralog (scaffold attachment factor B1), is a repressor of estrogen receptor alpha. The encoded protein binds scaffold/matrix attachment region (S/MAR) DNA and is involved in cell cycle regulation, apoptosis, differentiation, the stress response, and regulation of immune genes. [provided by RefSeq, May 2016]
PHENOTYPE: Male homozyous mutant mice exhibit an increase in testis weight and an increased number of Sertoli cells. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921509C19Rik	T	C	2: 151,313,851 (GRCm39)	H609R	probably benign	Het
Abca6	A	T	11: 110,074,899 (GRCm39)	V1388E	probably damaging	Het
Alx1	T	A	10: 102,861,177 (GRCm39)	D117V	probably damaging	Het
Ascl4	T	C	10: 85,764,401 (GRCm39)	L16P	probably damaging	Het
Atp4a	G	A	7: 30,420,097 (GRCm39)		probably benign	Het
Btnl10	G	A	11: 58,814,651 (GRCm39)	V444M	probably damaging	Het
Camkv	A	T	9: 107,823,345 (GRCm39)	N124Y	probably damaging	Het
Catsperb	T	C	12: 101,542,175 (GRCm39)	L625P	probably benign	Het
Ccdc171	A	G	4: 83,612,199 (GRCm39)	I973V	probably benign	Het
Celsr1	T	C	15: 85,815,483 (GRCm39)	D1844G	probably benign	Het
Chd7	G	C	4: 8,828,258 (GRCm39)	K1066N	probably damaging	Het
Cmklr1	C	G	5: 113,752,990 (GRCm39)	D4H	possibly damaging	Het
Corin	T	C	5: 72,515,827 (GRCm39)	D409G	probably benign	Het
Cry1	T	C	10: 84,982,588 (GRCm39)		probably null	Het
Cttnbp2	T	A	6: 18,427,689 (GRCm39)		probably benign	Het
Cyrib	T	A	15: 63,815,056 (GRCm39)	T139S	probably damaging	Het
Dmxl1	T	A	18: 50,022,531 (GRCm39)	V1623E	probably damaging	Het
Dnah6	G	T	6: 73,069,099 (GRCm39)	D2477E	possibly damaging	Het
Dnajb12	GC	G	10: 59,728,574 (GRCm39)		probably null	Het
Dop1a	C	G	9: 86,427,341 (GRCm39)	R2164G	probably damaging	Het
Dsp	A	G	13: 38,368,014 (GRCm39)	T678A	possibly damaging	Het
Farsb	A	C	1: 78,452,833 (GRCm39)	I51S	probably damaging	Het
Gm10220	T	A	5: 26,322,930 (GRCm39)	I161L	possibly damaging	Het
Gm10782	G	T	13: 56,510,987 (GRCm39)		noncoding transcript	Het
Gm12830	A	T	4: 114,702,248 (GRCm39)	T137S	unknown	Het
Gopc	A	G	10: 52,234,942 (GRCm39)	L67P	probably damaging	Het
Hmcn1	T	C	1: 150,551,291 (GRCm39)	I2655V	probably benign	Het
Hmcn2	C	T	2: 31,283,066 (GRCm39)	Q1981*	probably null	Het
Ifi209	T	A	1: 173,468,640 (GRCm39)	S157T	probably benign	Het
Ift56	T	G	6: 38,366,057 (GRCm39)	C124W	probably benign	Het
Iqcf1	A	T	9: 106,379,107 (GRCm39)	I74F	probably damaging	Het
Irf3	A	T	7: 44,649,382 (GRCm39)	R78W	probably damaging	Het
Kank4	T	C	4: 98,663,022 (GRCm39)	D722G	probably benign	Het
Loxl1	A	G	9: 58,198,065 (GRCm39)	V597A	possibly damaging	Het
Marveld1	T	C	19: 42,136,272 (GRCm39)	L62P	probably damaging	Het
Mga	T	G	2: 119,747,107 (GRCm39)	D419E	possibly damaging	Het
Mroh2a	A	G	1: 88,186,386 (GRCm39)	S64G	probably benign	Het
Mroh2b	A	G	15: 4,938,463 (GRCm39)	K251E	possibly damaging	Het
Myh4	A	G	11: 67,142,644 (GRCm39)	E935G	probably damaging	Het
Nat8f2	C	A	6: 85,844,994 (GRCm39)	A123S	possibly damaging	Het
Niban1	A	G	1: 151,593,837 (GRCm39)	T841A	probably benign	Het
Or4d11	G	A	19: 12,013,192 (GRCm39)	L305F	probably benign	Het
Pcdha9	T	A	18: 37,131,156 (GRCm39)	V75E	probably damaging	Het
Pebp4	A	T	14: 70,200,991 (GRCm39)		probably null	Het
Pitx1	A	G	13: 55,974,166 (GRCm39)	S222P	probably benign	Het
Plekhg3	G	A	12: 76,625,174 (GRCm39)	V1339M	possibly damaging	Het
Plekhs1	C	T	19: 56,468,260 (GRCm39)	S276L	possibly damaging	Het
Plin4	T	C	17: 56,411,932 (GRCm39)	T700A	possibly damaging	Het
Plxnb2	T	C	15: 89,048,412 (GRCm39)		probably null	Het
Pms2	T	C	5: 143,864,943 (GRCm39)	I675T	probably damaging	Het
Polrmt	A	G	10: 79,577,888 (GRCm39)	L268P	probably damaging	Het
Rtp1	A	G	16: 23,248,025 (GRCm39)	T33A	probably benign	Het
Sdk1	C	A	5: 142,085,941 (GRCm39)	P1383Q	probably damaging	Het
Setdb1	A	T	3: 95,244,569 (GRCm39)	C758S	probably damaging	Het
Sh3gl2	T	C	4: 85,317,160 (GRCm39)		probably benign	Het
Slc13a2	G	A	11: 78,295,648 (GRCm39)		probably benign	Het
Slc35b1	T	C	11: 95,278,631 (GRCm39)	Y126H	probably damaging	Het
Strip2	C	A	6: 29,917,154 (GRCm39)		probably benign	Het
Tbx4	A	G	11: 85,805,230 (GRCm39)	T440A	probably damaging	Het
Tcf7l2	C	A	19: 55,907,940 (GRCm39)		probably null	Het
Tgfb1	A	C	7: 25,387,574 (GRCm39)	D94A	probably benign	Het
Tmem132b	T	C	5: 125,864,797 (GRCm39)	C968R	probably damaging	Het
Tmem176b	T	A	6: 48,811,467 (GRCm39)	M61L	probably benign	Het
Tmem258	A	G	19: 10,184,689 (GRCm39)		probably null	Het
Tpr	T	C	1: 150,302,639 (GRCm39)	L1379S	probably benign	Het
Vmn2r44	T	C	7: 8,383,123 (GRCm39)	D157G	possibly damaging	Het
Wfdc8	T	C	2: 164,439,649 (GRCm39)	I244M	probably benign	Het
Zfp341	T	C	2: 154,466,921 (GRCm39)	S97P	probably benign	Het
Zfp655	T	C	5: 145,180,445 (GRCm39)	V101A	probably benign	Het
Zfp788	T	C	7: 41,299,277 (GRCm39)	S586P	probably damaging	Het
Zfp874b	C	T	13: 67,629,373 (GRCm39)	V52I	possibly damaging	Het

Other mutations in Safb2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00825:Safb2	APN	17	56,878,208 (GRCm39)	critical splice donor site	probably null
IGL00954:Safb2	APN	17	56,885,639 (GRCm39)	critical splice donor site	probably null
IGL01085:Safb2	APN	17	56,872,242 (GRCm39)	nonsense	probably null
IGL03073:Safb2	APN	17	56,878,289 (GRCm39)	missense	probably benign	0.06
R0748:Safb2	UTSW	17	56,882,580 (GRCm39)	missense	probably benign	0.30
R1297:Safb2	UTSW	17	56,891,265 (GRCm39)	unclassified	probably benign
R1876:Safb2	UTSW	17	56,883,909 (GRCm39)	splice site	probably null
R2921:Safb2	UTSW	17	56,875,906 (GRCm39)	missense	possibly damaging	0.46
R3966:Safb2	UTSW	17	56,882,356 (GRCm39)	missense	probably null	1.00
R5140:Safb2	UTSW	17	56,884,901 (GRCm39)	missense	probably benign	0.01
R5542:Safb2	UTSW	17	56,882,647 (GRCm39)	missense	probably damaging	0.97
R5602:Safb2	UTSW	17	56,882,630 (GRCm39)	missense	possibly damaging	0.65
R5801:Safb2	UTSW	17	56,870,103 (GRCm39)	missense	possibly damaging	0.96
R5864:Safb2	UTSW	17	56,873,491 (GRCm39)	unclassified	probably benign
R5985:Safb2	UTSW	17	56,870,181 (GRCm39)	missense	possibly damaging	0.72
R6060:Safb2	UTSW	17	56,870,246 (GRCm39)	splice site	probably null
R6279:Safb2	UTSW	17	56,870,226 (GRCm39)	missense	possibly damaging	0.53
R6300:Safb2	UTSW	17	56,870,226 (GRCm39)	missense	possibly damaging	0.53
R6411:Safb2	UTSW	17	56,878,289 (GRCm39)	missense	probably benign	0.06
R6555:Safb2	UTSW	17	56,889,982 (GRCm39)	critical splice donor site	probably null
R6555:Safb2	UTSW	17	56,874,600 (GRCm39)	missense	probably damaging	1.00
R7039:Safb2	UTSW	17	56,871,594 (GRCm39)	missense	possibly damaging	0.82
R7515:Safb2	UTSW	17	56,889,982 (GRCm39)	critical splice donor site	probably null
R7796:Safb2	UTSW	17	56,873,327 (GRCm39)	missense	possibly damaging	0.53
R8186:Safb2	UTSW	17	56,873,051 (GRCm39)	missense	possibly damaging	0.91
R8361:Safb2	UTSW	17	56,890,061 (GRCm39)	missense	probably damaging	0.99
R8918:Safb2	UTSW	17	56,882,975 (GRCm39)	nonsense	probably null
R8998:Safb2	UTSW	17	56,870,391 (GRCm39)	missense	possibly damaging	0.53
R9025:Safb2	UTSW	17	56,873,614 (GRCm39)	missense	probably damaging	0.99
R9176:Safb2	UTSW	17	56,878,292 (GRCm39)	utr 3 prime	probably benign
R9183:Safb2	UTSW	17	56,878,292 (GRCm39)	utr 3 prime	probably benign
R9184:Safb2	UTSW	17	56,878,292 (GRCm39)	utr 3 prime	probably benign
R9213:Safb2	UTSW	17	56,882,602 (GRCm39)	missense	probably benign	0.01
R9522:Safb2	UTSW	17	56,873,900 (GRCm39)	missense	probably damaging	1.00
X0066:Safb2	UTSW	17	56,872,978 (GRCm39)	missense	probably benign	0.29
Z1186:Safb2	UTSW	17	56,870,246 (GRCm39)	splice site	probably null

Predicted Primers

PCR Primer
(F):5'- GTCGTCAATTTAAGAACCCAACG -3'
(R):5'- GCCAGTTGAACAGAGTAGCAC -3'

Sequencing Primer
(F):5'- ACCCAACGATGGCAGGTTG -3'
(R):5'- AACAGAGTAGCACGGCTGCC -3'

Posted On

2016-10-05