Mutagenetix > Incidental Mutation

Incidental Mutation 'R5507:Psg17'

430977

Institutional Source

Beutler Lab

Gene Symbol

Psg17

Ensembl Gene

ENSMUSG00000004540

Gene Name

pregnancy specific beta-1-glycoprotein 17

Synonyms

mmCGM5, Cea2, Cea-2

MMRRC Submission

043068-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R5507 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

18547862-18555516 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 18553851 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 133 (D133G)

Ref Sequence

ENSEMBL: ENSMUSP00000004655 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000004655]

AlphaFold

Q62056

Predicted Effect

probably benign
Transcript: ENSMUST00000004655
AA Change: D133G

PolyPhen 2 Score 0.039 (Sensitivity: 0.94; Specificity: 0.83)

SMART Domains

Protein: ENSMUSP00000004655
Gene: ENSMUSG00000004540
AA Change: D133G

Domain	Start	End	E-Value	Type
low complexity region	19	34	N/A	INTRINSIC
IG	40	141	1.84e-2	SMART
IG	160	261	3.63e0	SMART
IG	280	381	2.03e-4	SMART
IGc2	397	461	2.35e-9	SMART

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 98.3%
3x: 97.3%
10x: 95.3%
20x: 91.2%

Validation Efficiency

100% (66/66)

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700009N14Rik	A	G	4: 39,451,084 (GRCm39)	T97A	probably damaging	Het
1700017N19Rik	T	C	10: 100,445,095 (GRCm39)	S27P	probably benign	Het
Acoxl	C	A	2: 127,726,394 (GRCm39)	A256E	probably damaging	Het
Akap9	A	G	5: 4,018,683 (GRCm39)	E1088G	probably benign	Het
Alox12	T	C	11: 70,145,238 (GRCm39)	T112A	possibly damaging	Het
Ampd2	A	G	3: 107,984,929 (GRCm39)	V379A	probably damaging	Het
Ap4e1	C	A	2: 126,850,818 (GRCm39)	H49N	probably damaging	Het
Arhgap11a	T	C	2: 113,672,023 (GRCm39)	T260A	probably benign	Het
Atg2a	T	C	19: 6,295,100 (GRCm39)	F171S	possibly damaging	Het
Bpifb9b	A	T	2: 154,158,947 (GRCm39)	Y488F	possibly damaging	Het
C2cd2	T	C	16: 97,682,820 (GRCm39)	T139A	probably benign	Het
Cct8l1	A	T	5: 25,721,377 (GRCm39)	T31S	probably benign	Het
Cdhr1	A	T	14: 36,804,802 (GRCm39)	N469K	probably damaging	Het
Chga	T	C	12: 102,528,868 (GRCm39)	S282P	probably benign	Het
Chrnb4	T	G	9: 54,942,296 (GRCm39)	H326P	probably damaging	Het
Cntnap1	A	G	11: 101,074,303 (GRCm39)	T748A	probably benign	Het
Cpsf3	T	A	12: 21,347,929 (GRCm39)	L250H	probably damaging	Het
Dnajb12	GC	G	10: 59,728,574 (GRCm39)		probably null	Het
Dppa5a	T	A	9: 78,275,353 (GRCm39)	D10V	possibly damaging	Het
Dsc2	G	A	18: 20,179,336 (GRCm39)	T244I	probably damaging	Het
Elavl4	T	C	4: 110,070,403 (GRCm39)	T144A	probably benign	Het
Ephb1	C	T	9: 101,813,315 (GRCm39)	V776M	probably damaging	Het
Fcrl1	C	T	3: 87,298,549 (GRCm39)	S348F	probably benign	Het
Fga	T	A	3: 82,940,643 (GRCm39)	W766R	probably damaging	Het
Galnt14	A	G	17: 73,802,661 (GRCm39)	V477A	probably damaging	Het
Gcdh	A	G	8: 85,619,486 (GRCm39)	L103P	probably damaging	Het
Gm27013	G	A	6: 130,652,942 (GRCm39)	T840I	probably damaging	Het
Gpr179	A	T	11: 97,229,156 (GRCm39)	W1000R	probably damaging	Het
Hectd4	C	T	5: 121,419,164 (GRCm39)	A581V	unknown	Het
Ints12	T	A	3: 132,814,921 (GRCm39)	V376E	probably damaging	Het
Krt77	T	C	15: 101,769,665 (GRCm39)	I402V	probably benign	Het
Marchf1	T	C	8: 66,871,542 (GRCm39)	V102A	probably damaging	Het
Meis1	A	T	11: 18,966,168 (GRCm39)	N68K	probably benign	Het
Mthfd1l	A	G	10: 4,056,432 (GRCm39)	E916G	probably benign	Het
Muc5ac	T	C	7: 141,361,569 (GRCm39)	F1627L	possibly damaging	Het
Myef2	A	T	2: 124,958,623 (GRCm39)	M102K	probably benign	Het
Naip6	A	C	13: 100,435,423 (GRCm39)	H1033Q	probably benign	Het
Nid1	T	A	13: 13,663,622 (GRCm39)	C760*	probably null	Het
Nt5dc1	A	T	10: 34,273,226 (GRCm39)	C191S	probably benign	Het
Nup214	A	G	2: 31,878,188 (GRCm39)	E285G	possibly damaging	Het
Nvl	A	G	1: 180,962,601 (GRCm39)	L123P	probably damaging	Het
Or5t9	T	A	2: 86,659,661 (GRCm39)	H188Q	probably damaging	Het
Otog	A	G	7: 45,911,123 (GRCm39)	E658G	probably damaging	Het
Pam16	G	T	16: 4,435,880 (GRCm39)		probably benign	Het
Rabgap1l	A	G	1: 160,178,898 (GRCm39)	S21P	possibly damaging	Het
Rgs22	T	A	15: 36,099,798 (GRCm39)	M306L	probably damaging	Het
Ruvbl1	A	G	6: 88,444,582 (GRCm39)	K59R	probably benign	Het
Samd9l	T	C	6: 3,373,898 (GRCm39)	E1121G	possibly damaging	Het
Serpinb13	A	G	1: 106,926,332 (GRCm39)	N169S	probably benign	Het
Setbp1	T	A	18: 79,129,927 (GRCm39)	T102S	probably damaging	Het
Syn3	A	T	10: 85,916,090 (GRCm39)	S299T	probably benign	Het
Taar7a	A	G	10: 23,868,529 (GRCm39)	L284P	probably damaging	Het
Tlr6	C	A	5: 65,110,749 (GRCm39)	Q719H	probably damaging	Het
Tmem131	T	A	1: 36,928,361 (GRCm39)	D76V	probably damaging	Het
Tradd	T	G	8: 105,986,257 (GRCm39)	D145A	possibly damaging	Het
Usp20	A	T	2: 30,900,238 (GRCm39)	M251L	probably benign	Het
Vmn2r96	T	A	17: 18,818,091 (GRCm39)	L556Q	probably damaging	Het
Xrcc2	A	G	5: 25,897,317 (GRCm39)	S211P	probably benign	Het

Other mutations in Psg17

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00885:Psg17	APN	7	18,554,091 (GRCm39)	missense	probably damaging	1.00
IGL01649:Psg17	APN	7	18,550,727 (GRCm39)	missense	possibly damaging	0.60
IGL02171:Psg17	APN	7	18,552,712 (GRCm39)	missense	probably damaging	0.98
PIT4151001:Psg17	UTSW	7	18,548,530 (GRCm39)	missense	probably benign	0.26
R1178:Psg17	UTSW	7	18,548,380 (GRCm39)	missense	probably benign	0.13
R1767:Psg17	UTSW	7	18,550,727 (GRCm39)	missense	possibly damaging	0.60
R1991:Psg17	UTSW	7	18,548,577 (GRCm39)	missense	probably benign	0.02
R4428:Psg17	UTSW	7	18,550,717 (GRCm39)	missense	probably benign	0.31
R5285:Psg17	UTSW	7	18,554,126 (GRCm39)	missense	probably benign	0.01
R5516:Psg17	UTSW	7	18,548,458 (GRCm39)	missense	probably benign	0.30
R5837:Psg17	UTSW	7	18,554,140 (GRCm39)	missense	possibly damaging	0.58
R6481:Psg17	UTSW	7	18,548,375 (GRCm39)	missense	probably damaging	1.00
R6817:Psg17	UTSW	7	18,548,565 (GRCm39)	missense	probably damaging	1.00
R7124:Psg17	UTSW	7	18,548,422 (GRCm39)	missense	probably damaging	1.00
R7124:Psg17	UTSW	7	18,548,421 (GRCm39)	missense	probably damaging	1.00
R7243:Psg17	UTSW	7	18,552,640 (GRCm39)	missense	probably damaging	1.00
R7268:Psg17	UTSW	7	18,548,586 (GRCm39)	missense	possibly damaging	0.64
R7384:Psg17	UTSW	7	18,552,585 (GRCm39)	missense	possibly damaging	0.67
R7544:Psg17	UTSW	7	18,553,897 (GRCm39)	missense	probably benign	0.25
R7555:Psg17	UTSW	7	18,551,019 (GRCm39)	missense	probably benign	0.03
R7634:Psg17	UTSW	7	18,548,416 (GRCm39)	missense	probably damaging	1.00
R8716:Psg17	UTSW	7	18,555,310 (GRCm39)	missense	probably benign	0.30
R8755:Psg17	UTSW	7	18,550,836 (GRCm39)	missense	possibly damaging	0.64
R9105:Psg17	UTSW	7	18,555,333 (GRCm39)	missense	probably benign	0.04
R9145:Psg17	UTSW	7	18,553,851 (GRCm39)	missense	probably benign	0.01
R9296:Psg17	UTSW	7	18,553,991 (GRCm39)	missense	probably benign	0.10
Z1088:Psg17	UTSW	7	18,550,835 (GRCm39)	missense	probably benign	0.03

Predicted Primers

PCR Primer
(F):5'- ATTGTTCTCCACCGTGTGTG -3'
(R):5'- GCGTTGATAATCTGCCAGAGAATC -3'

Sequencing Primer
(F):5'- CACCGTGTGTGTCCTGC -3'
(R):5'- AATCTGCCAGAGAATCTTCTAGG -3'

Posted On

2016-10-05