Incidental Mutation 'R5518:Zfp280d'
ID 431409
Institutional Source Beutler Lab
Gene Symbol Zfp280d
Ensembl Gene ENSMUSG00000038535
Gene Name zinc finger protein 280D
Synonyms Suhw4
MMRRC Submission 043077-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.246) question?
Stock # R5518 (G1)
Quality Score 225
Status Validated
Chromosome 9
Chromosomal Location 72182142-72271059 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 72231417 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Histidine to Arginine at position 451 (H451R)
Ref Sequence ENSEMBL: ENSMUSP00000138857 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000098576] [ENSMUST00000183410] [ENSMUST00000183801] [ENSMUST00000184036] [ENSMUST00000184053] [ENSMUST00000184517] [ENSMUST00000184399]
AlphaFold Q68FE8
Predicted Effect possibly damaging
Transcript: ENSMUST00000098576
AA Change: H476R

PolyPhen 2 Score 0.495 (Sensitivity: 0.88; Specificity: 0.90)
SMART Domains Protein: ENSMUSP00000096175
Gene: ENSMUSG00000038535
AA Change: H476R

DomainStartEndE-ValueType
low complexity region 28 39 N/A INTRINSIC
low complexity region 43 55 N/A INTRINSIC
Pfam:DUF4195 57 241 6.8e-82 PFAM
ZnF_C2H2 252 272 1.24e2 SMART
ZnF_C2H2 333 355 6.92e0 SMART
ZnF_C2H2 370 393 3.99e0 SMART
ZnF_C2H2 400 423 1.08e-1 SMART
ZnF_C2H2 430 453 3.52e-1 SMART
ZnF_C2H2 459 481 2.41e1 SMART
ZnF_C2H2 487 509 3.38e1 SMART
low complexity region 539 561 N/A INTRINSIC
low complexity region 591 611 N/A INTRINSIC
ZnF_C2H2 656 679 1.23e1 SMART
ZnF_C2H2 702 726 1.34e2 SMART
Predicted Effect possibly damaging
Transcript: ENSMUST00000183410
AA Change: H476R

PolyPhen 2 Score 0.834 (Sensitivity: 0.84; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000139250
Gene: ENSMUSG00000038535
AA Change: H476R

DomainStartEndE-ValueType
low complexity region 28 39 N/A INTRINSIC
low complexity region 43 55 N/A INTRINSIC
Pfam:DUF4195 57 242 4.1e-98 PFAM
ZnF_C2H2 252 272 1.24e2 SMART
ZnF_C2H2 333 355 6.92e0 SMART
ZnF_C2H2 370 393 3.99e0 SMART
ZnF_C2H2 400 423 1.08e-1 SMART
ZnF_C2H2 430 453 3.52e-1 SMART
ZnF_C2H2 459 481 2.41e1 SMART
ZnF_C2H2 487 509 3.38e1 SMART
low complexity region 539 561 N/A INTRINSIC
low complexity region 591 611 N/A INTRINSIC
ZnF_C2H2 656 679 1.23e1 SMART
ZnF_C2H2 702 726 1.34e2 SMART
Predicted Effect possibly damaging
Transcript: ENSMUST00000183801
AA Change: H476R

PolyPhen 2 Score 0.468 (Sensitivity: 0.89; Specificity: 0.90)
SMART Domains Protein: ENSMUSP00000139091
Gene: ENSMUSG00000038535
AA Change: H476R

DomainStartEndE-ValueType
low complexity region 28 39 N/A INTRINSIC
low complexity region 43 55 N/A INTRINSIC
Pfam:DUF4195 57 242 1.9e-98 PFAM
ZnF_C2H2 252 272 1.24e2 SMART
ZnF_C2H2 333 355 6.92e0 SMART
ZnF_C2H2 370 393 3.99e0 SMART
ZnF_C2H2 400 423 1.08e-1 SMART
ZnF_C2H2 430 453 3.52e-1 SMART
ZnF_C2H2 459 481 2.41e1 SMART
ZnF_C2H2 487 509 3.38e1 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000184025
Predicted Effect probably damaging
Transcript: ENSMUST00000184036
AA Change: H451R

PolyPhen 2 Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000138857
Gene: ENSMUSG00000038535
AA Change: H451R

DomainStartEndE-ValueType
low complexity region 3 14 N/A INTRINSIC
low complexity region 18 30 N/A INTRINSIC
Pfam:DUF4195 32 217 5.5e-98 PFAM
ZnF_C2H2 227 247 1.24e2 SMART
ZnF_C2H2 308 330 6.92e0 SMART
ZnF_C2H2 345 368 3.99e0 SMART
ZnF_C2H2 375 398 1.08e-1 SMART
ZnF_C2H2 405 428 3.52e-1 SMART
ZnF_C2H2 434 456 2.41e1 SMART
ZnF_C2H2 462 484 3.38e1 SMART
low complexity region 514 536 N/A INTRINSIC
low complexity region 566 586 N/A INTRINSIC
ZnF_C2H2 631 654 1.23e1 SMART
ZnF_C2H2 677 701 1.34e2 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000184053
SMART Domains Protein: ENSMUSP00000138848
Gene: ENSMUSG00000038535

DomainStartEndE-ValueType
low complexity region 28 39 N/A INTRINSIC
low complexity region 43 55 N/A INTRINSIC
Pfam:DUF4195 57 147 1e-48 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000184141
Predicted Effect possibly damaging
Transcript: ENSMUST00000184517
AA Change: H476R

PolyPhen 2 Score 0.495 (Sensitivity: 0.88; Specificity: 0.90)
SMART Domains Protein: ENSMUSP00000138970
Gene: ENSMUSG00000038535
AA Change: H476R

DomainStartEndE-ValueType
low complexity region 28 39 N/A INTRINSIC
low complexity region 43 55 N/A INTRINSIC
Pfam:DUF4195 57 242 2.2e-98 PFAM
ZnF_C2H2 252 272 1.24e2 SMART
ZnF_C2H2 333 355 6.92e0 SMART
ZnF_C2H2 370 393 3.99e0 SMART
ZnF_C2H2 400 423 1.08e-1 SMART
ZnF_C2H2 430 453 3.52e-1 SMART
ZnF_C2H2 459 481 2.41e1 SMART
ZnF_C2H2 487 509 3.38e1 SMART
low complexity region 539 561 N/A INTRINSIC
low complexity region 591 611 N/A INTRINSIC
ZnF_C2H2 656 679 1.23e1 SMART
ZnF_C2H2 702 726 1.34e2 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000184248
Predicted Effect probably benign
Transcript: ENSMUST00000184786
Predicted Effect probably benign
Transcript: ENSMUST00000185020
Predicted Effect probably benign
Transcript: ENSMUST00000184399
SMART Domains Protein: ENSMUSP00000138902
Gene: ENSMUSG00000038535

DomainStartEndE-ValueType
low complexity region 28 39 N/A INTRINSIC
low complexity region 43 55 N/A INTRINSIC
Pfam:DUF4195 57 103 4.8e-23 PFAM
Meta Mutation Damage Score 0.0713 question?
Coding Region Coverage
  • 1x: 99.0%
  • 3x: 97.4%
  • 10x: 94.2%
  • 20x: 86.3%
Validation Efficiency 100% (75/75)
Allele List at MGI

All alleles(100) : Targeted(2) Gene trapped(98)

Other mutations in this stock
Total: 64 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abcc8 C T 7: 45,769,873 (GRCm39) E881K probably benign Het
Abcf1 C T 17: 36,269,233 (GRCm39) R675K possibly damaging Het
Abl1 T A 2: 31,680,754 (GRCm39) C349S probably damaging Het
Acot11 C A 4: 106,607,207 (GRCm39) V459L probably benign Het
Ank2 A T 3: 126,753,348 (GRCm39) V311D probably damaging Het
Ankrd11 C G 8: 123,617,733 (GRCm39) E2040Q possibly damaging Het
Ankrd26 T C 6: 118,525,869 (GRCm39) I359V probably benign Het
Armc3 T G 2: 19,302,739 (GRCm39) L684V probably benign Het
Asb10 G A 5: 24,744,643 (GRCm39) P184S probably damaging Het
Atp10b T C 11: 43,042,463 (GRCm39) S8P possibly damaging Het
Blk G T 14: 63,615,956 (GRCm39) S324R possibly damaging Het
C4b G C 17: 34,953,416 (GRCm39) N1022K probably benign Het
Card6 G T 15: 5,134,696 (GRCm39) T169K probably damaging Het
Catsper2 T C 2: 121,236,844 (GRCm39) T268A possibly damaging Het
Cbx3 C T 6: 51,458,726 (GRCm39) P64S probably benign Het
Chchd6 A G 6: 89,544,567 (GRCm39) probably null Het
Cntn1 G A 15: 92,212,534 (GRCm39) E899K probably benign Het
Col6a4 A T 9: 105,949,387 (GRCm39) S749R possibly damaging Het
Cpne3 T G 4: 19,553,779 (GRCm39) N84T probably benign Het
Dcxr A C 11: 120,617,025 (GRCm39) probably benign Het
Dnhd1 G A 7: 105,352,416 (GRCm39) R2523Q probably damaging Het
Emsy T C 7: 98,242,818 (GRCm39) Q1107R possibly damaging Het
Erbb2 G T 11: 98,313,596 (GRCm39) C221F probably damaging Het
Exoc3l T C 8: 106,019,795 (GRCm39) N353D probably benign Het
Fchsd1 C T 18: 38,092,926 (GRCm39) probably benign Het
G3bp2 T A 5: 92,216,347 (GRCm39) H63L probably benign Het
Galnt17 A G 5: 130,929,428 (GRCm39) Y460H probably damaging Het
Gm6003 T A 7: 32,865,004 (GRCm39) noncoding transcript Het
Ighv5-12-4 A G 12: 113,726,154 (GRCm39) L23P probably damaging Het
Ins1 T C 19: 52,253,177 (GRCm39) L39P probably damaging Het
Itpr3 T G 17: 27,306,566 (GRCm39) V210G probably damaging Het
Klrb1 T A 6: 128,683,488 (GRCm39) T210S probably benign Het
Krtap24-1 A T 16: 88,408,596 (GRCm39) F177I probably damaging Het
Lrrc37 A T 11: 103,506,079 (GRCm39) I1963K probably benign Het
Mcat A G 15: 83,431,875 (GRCm39) probably null Het
Mknk2 A T 10: 80,504,475 (GRCm39) C229S possibly damaging Het
Mta2 C A 19: 8,925,456 (GRCm39) Q362K probably benign Het
Ndst4 T C 3: 125,232,105 (GRCm39) Y225H probably benign Het
Or4d11 T C 19: 12,013,429 (GRCm39) R226G probably damaging Het
Pcdha1 A G 18: 37,065,415 (GRCm39) D693G probably benign Het
Pik3r5 G A 11: 68,368,294 (GRCm39) D100N possibly damaging Het
Pld3 T C 7: 27,231,796 (GRCm39) D465G probably damaging Het
Prkdc T C 16: 15,496,172 (GRCm39) Y788H probably damaging Het
Ptprt T A 2: 162,120,143 (GRCm39) D108V probably damaging Het
Rasgrp3 T A 17: 75,823,354 (GRCm39) M475K probably benign Het
Rbak A G 5: 143,159,064 (GRCm39) L663P probably damaging Het
Rnf17 A G 14: 56,719,590 (GRCm39) N947D probably damaging Het
Ryr2 T C 13: 11,702,795 (GRCm39) S2898G probably benign Het
Serpina1e A C 12: 103,917,087 (GRCm39) L194R probably damaging Het
Smg6 T C 11: 74,944,724 (GRCm39) S158P probably damaging Het
Smtnl2 A T 11: 72,292,342 (GRCm39) V269E possibly damaging Het
Snx14 G T 9: 88,265,855 (GRCm39) P760Q probably damaging Het
Sorl1 T C 9: 41,948,508 (GRCm39) E759G possibly damaging Het
Sspo C T 6: 48,473,588 (GRCm39) T4906M possibly damaging Het
Syne2 T A 12: 75,991,944 (GRCm39) F1970I possibly damaging Het
Tekt3 C A 11: 62,974,768 (GRCm39) H362Q probably benign Het
Tmem121 T C 12: 113,152,547 (GRCm39) V255A possibly damaging Het
Tmem201 T C 4: 149,802,534 (GRCm39) T614A probably benign Het
Tnc T C 4: 63,935,916 (GRCm39) D340G probably damaging Het
Ttc28 A T 5: 111,373,794 (GRCm39) T1046S probably benign Het
Ubxn2a T C 12: 4,952,238 (GRCm39) D8G probably benign Het
Vwde T C 6: 13,186,937 (GRCm39) N850S probably benign Het
Zfp462 T C 4: 55,009,818 (GRCm39) C595R probably damaging Het
Zfp768 A G 7: 126,943,583 (GRCm39) S182P probably benign Het
Other mutations in Zfp280d
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00504:Zfp280d APN 9 72,229,853 (GRCm39) missense probably damaging 1.00
IGL00708:Zfp280d APN 9 72,219,417 (GRCm39) missense probably benign 0.19
IGL01333:Zfp280d APN 9 72,242,396 (GRCm39) splice site probably benign
IGL01453:Zfp280d APN 9 72,229,868 (GRCm39) missense possibly damaging 0.90
IGL02472:Zfp280d APN 9 72,208,993 (GRCm39) missense probably damaging 1.00
IGL02583:Zfp280d APN 9 72,229,727 (GRCm39) splice site probably benign
IGL02608:Zfp280d APN 9 72,215,261 (GRCm39) missense probably damaging 0.98
IGL02675:Zfp280d APN 9 72,219,504 (GRCm39) missense probably benign 0.33
IGL02676:Zfp280d APN 9 72,242,356 (GRCm39) missense probably damaging 1.00
IGL02931:Zfp280d APN 9 72,203,307 (GRCm39) missense probably benign 0.02
IGL03076:Zfp280d APN 9 72,219,944 (GRCm39) missense probably damaging 0.99
R0017:Zfp280d UTSW 9 72,246,292 (GRCm39) critical splice acceptor site probably null
R0017:Zfp280d UTSW 9 72,246,292 (GRCm39) critical splice acceptor site probably null
R0288:Zfp280d UTSW 9 72,238,621 (GRCm39) nonsense probably null
R0419:Zfp280d UTSW 9 72,219,519 (GRCm39) missense probably benign 0.02
R0540:Zfp280d UTSW 9 72,215,247 (GRCm39) missense probably damaging 0.97
R0628:Zfp280d UTSW 9 72,269,230 (GRCm39) missense probably benign
R0722:Zfp280d UTSW 9 72,219,383 (GRCm39) missense possibly damaging 0.63
R1055:Zfp280d UTSW 9 72,236,449 (GRCm39) splice site probably null
R1786:Zfp280d UTSW 9 72,215,287 (GRCm39) missense probably damaging 1.00
R1826:Zfp280d UTSW 9 72,206,062 (GRCm39) missense probably damaging 1.00
R1962:Zfp280d UTSW 9 72,242,362 (GRCm39) nonsense probably null
R2130:Zfp280d UTSW 9 72,215,287 (GRCm39) missense probably damaging 1.00
R2132:Zfp280d UTSW 9 72,215,287 (GRCm39) missense probably damaging 1.00
R2133:Zfp280d UTSW 9 72,215,287 (GRCm39) missense probably damaging 1.00
R2143:Zfp280d UTSW 9 72,220,011 (GRCm39) missense probably damaging 1.00
R2162:Zfp280d UTSW 9 72,206,104 (GRCm39) missense probably damaging 1.00
R2266:Zfp280d UTSW 9 72,209,052 (GRCm39) splice site probably benign
R2269:Zfp280d UTSW 9 72,209,052 (GRCm39) splice site probably benign
R2278:Zfp280d UTSW 9 72,246,055 (GRCm39) nonsense probably null
R2850:Zfp280d UTSW 9 72,219,371 (GRCm39) missense probably benign 0.06
R3780:Zfp280d UTSW 9 72,229,806 (GRCm39) missense probably damaging 1.00
R3950:Zfp280d UTSW 9 72,203,301 (GRCm39) missense possibly damaging 0.49
R4330:Zfp280d UTSW 9 72,203,261 (GRCm39) missense possibly damaging 0.86
R4716:Zfp280d UTSW 9 72,219,947 (GRCm39) missense possibly damaging 0.94
R4876:Zfp280d UTSW 9 72,206,140 (GRCm39) splice site probably benign
R4909:Zfp280d UTSW 9 72,238,714 (GRCm39) missense probably damaging 1.00
R5214:Zfp280d UTSW 9 72,215,395 (GRCm39) unclassified probably benign
R5853:Zfp280d UTSW 9 72,238,224 (GRCm39) missense probably benign 0.20
R5945:Zfp280d UTSW 9 72,269,614 (GRCm39) nonsense probably null
R6033:Zfp280d UTSW 9 72,236,419 (GRCm39) missense probably damaging 1.00
R6033:Zfp280d UTSW 9 72,236,419 (GRCm39) missense probably damaging 1.00
R7043:Zfp280d UTSW 9 72,226,539 (GRCm39) missense probably damaging 1.00
R7501:Zfp280d UTSW 9 72,269,224 (GRCm39) missense possibly damaging 0.65
R7658:Zfp280d UTSW 9 72,231,354 (GRCm39) missense probably damaging 1.00
R7667:Zfp280d UTSW 9 72,209,247 (GRCm39) missense probably damaging 1.00
R7792:Zfp280d UTSW 9 72,238,601 (GRCm39) missense probably damaging 1.00
R7826:Zfp280d UTSW 9 72,219,953 (GRCm39) missense possibly damaging 0.68
R7964:Zfp280d UTSW 9 72,229,740 (GRCm39) missense probably damaging 1.00
R8096:Zfp280d UTSW 9 72,226,560 (GRCm39) missense probably damaging 1.00
R8188:Zfp280d UTSW 9 72,267,615 (GRCm39) missense probably benign 0.01
R9210:Zfp280d UTSW 9 72,269,789 (GRCm39) makesense probably null
R9212:Zfp280d UTSW 9 72,269,789 (GRCm39) makesense probably null
R9435:Zfp280d UTSW 9 72,226,599 (GRCm39) critical splice donor site probably null
Predicted Primers PCR Primer
(F):5'- CATTGGAGCTGGGTTGACAG -3'
(R):5'- AGTCTTGTCAACTGTTTAGAGACC -3'

Sequencing Primer
(F):5'- AGCTGGGTTGACAGTATATTTGTAG -3'
(R):5'- CAACTGTTTAGAGACCAAGTATCAC -3'
Posted On 2016-10-05