Mutagenetix > Incidental Mutation

Incidental Mutation 'R5521:Mapk6'

431557

Institutional Source

Beutler Lab

Gene Symbol

Mapk6

Ensembl Gene

ENSMUSG00000042688

Gene Name

mitogen-activated protein kinase 6

Synonyms

Prkm6, 2610021I23Rik, Prkm4, Erk3, D130053K17Rik, Mapk4, Mapk63, ERK3

MMRRC Submission

043080-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.550) question?

Stock #

R5521 (G1)

Quality Score

215

Status

Validated

Chromosome

Chromosomal Location

75294064-75317303 bp(-) (GRCm39)

Type of Mutation

intron

DNA Base Change (assembly)

G to A at 75300598 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000129024 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000049355] [ENSMUST00000168937]

AlphaFold

Q61532

Predicted Effect

probably benign
Transcript: ENSMUST00000049355

SMART Domains

Protein: ENSMUSP00000040315
Gene: ENSMUSG00000042688

Domain	Start	End	E-Value	Type
S_TKc	20	316	8.02e-87	SMART
low complexity region	647	670	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000168937

SMART Domains

Protein: ENSMUSP00000129024
Gene: ENSMUSG00000042688

Domain	Start	End	E-Value	Type
S_TKc	20	316	8.02e-87	SMART
low complexity region	647	670	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000172946

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000173230

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000173460

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000174034

Coding Region Coverage

1x: 99.1%
3x: 97.5%
10x: 94.4%
20x: 87.5%

Validation Efficiency

94% (72/77)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the Ser/Thr protein kinase family, and is most closely related to mitogen-activated protein kinases (MAP kinases). MAP kinases also known as extracellular signal-regulated kinases (ERKs), are activated through protein phosphorylation cascades and act as integration points for multiple biochemical signals. This kinase is localized in the nucleus, and has been reported to be activated in fibroblasts upon treatment with serum or phorbol esters. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous null mice show limited fetal growth, reduced serum IGF2 levels, pulmonary hypoplasia and early neonatal death. About 40% of newborns die of acute respiratory failure exhibiting delayed lung maturation, reduced sacculation, atelectasis, and impaired type II pneumocyte differentiation. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 65 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcg4	A	G	9: 44,190,980 (GRCm39)		probably benign	Het
Abhd14a	G	T	9: 106,321,033 (GRCm39)	D107E	probably damaging	Het
Acat1	T	A	9: 53,494,807 (GRCm39)	K362*	probably null	Het
Adad2	T	A	8: 120,339,528 (GRCm39)	S3R	probably benign	Het
Adcy8	C	A	15: 64,687,199 (GRCm39)	R435M	probably damaging	Het
Adgrv1	A	T	13: 81,567,508 (GRCm39)	S5222T	probably benign	Het
Ankk1	A	T	9: 49,331,748 (GRCm39)	M182K	probably benign	Het
Apba1	C	T	19: 23,870,957 (GRCm39)	P263L	probably damaging	Het
Arhgap39	G	A	15: 76,649,694 (GRCm39)	S26L	possibly damaging	Het
Ccng1	G	A	11: 40,643,093 (GRCm39)	T118I	possibly damaging	Het
Cenpe	T	C	3: 134,974,826 (GRCm39)	S2329P	probably damaging	Het
Chil4	A	G	3: 106,111,013 (GRCm39)	Y294H	possibly damaging	Het
Chst8	A	C	7: 34,374,670 (GRCm39)	S390A	probably benign	Het
Dars1	T	C	1: 128,301,710 (GRCm39)	D308G	probably benign	Het
Dlec1	A	C	9: 118,972,469 (GRCm39)	Q1458P	possibly damaging	Het
Dvl2	G	A	11: 69,897,233 (GRCm39)	E312K	probably damaging	Het
Fchsd1	T	C	18: 38,099,537 (GRCm39)	H219R	probably damaging	Het
Foxd4	A	C	19: 24,877,007 (GRCm39)	C398G	probably damaging	Het
Gm10719	T	A	9: 3,018,970 (GRCm39)	F72I	probably damaging	Het
Gm5414	T	C	15: 101,536,422 (GRCm39)	I68V	probably benign	Het
Gmip	C	T	8: 70,270,049 (GRCm39)	T684I	probably damaging	Het
Gpr137c	T	C	14: 45,516,151 (GRCm39)	I295T	possibly damaging	Het
Hivep1	T	A	13: 42,311,804 (GRCm39)	M1348K	probably damaging	Het
Igkv6-23	T	C	6: 70,237,597 (GRCm39)	D48G	probably benign	Het
Il3	G	A	11: 54,157,958 (GRCm39)	T40M	possibly damaging	Het
Ing2	T	C	8: 48,122,248 (GRCm39)	E100G	probably damaging	Het
Itpr3	C	A	17: 27,326,308 (GRCm39)	H1359Q	probably benign	Het
Lama1	T	A	17: 68,087,889 (GRCm39)	Y1502*	probably null	Het
Mamdc2	C	A	19: 23,288,302 (GRCm39)	G579W	probably damaging	Het
Mapk8ip2	C	T	15: 89,343,007 (GRCm39)	R616W	probably damaging	Het
Mc5r	T	A	18: 68,472,748 (GRCm39)	L369H	possibly damaging	Het
Meis1	T	C	11: 18,938,260 (GRCm39)		probably benign	Het
Mmp8	A	G	9: 7,560,644 (GRCm39)	K107R	probably benign	Het
Mn1	C	T	5: 111,569,635 (GRCm39)	H1202Y	possibly damaging	Het
Naip2	A	G	13: 100,291,422 (GRCm39)	L1172P	probably damaging	Het
Nek9	C	T	12: 85,374,219 (GRCm39)	D273N	probably benign	Het
Nlrp4e	A	T	7: 23,021,190 (GRCm39)	D559V	probably benign	Het
Nlrp4g	T	C	9: 124,350,020 (GRCm38)		noncoding transcript	Het
Oit3	G	T	10: 59,271,736 (GRCm39)	A207E	probably benign	Het
Or13j1	A	T	4: 43,705,788 (GRCm39)	M260K	possibly damaging	Het
Or14a257	A	T	7: 86,137,839 (GRCm39)	C307S	probably benign	Het
Or4d2b	A	T	11: 87,780,545 (GRCm39)	M59K	probably damaging	Het
Or5w16	A	G	2: 87,577,406 (GRCm39)	I289V	probably benign	Het
Pde4c	T	C	8: 71,200,031 (GRCm39)		probably null	Het
Ppp1r26	A	G	2: 28,341,438 (GRCm39)	E356G	probably benign	Het
Pramel13	A	G	4: 144,122,541 (GRCm39)	M1T	probably null	Het
Ptges3-ps	T	A	6: 85,821,303 (GRCm39)		noncoding transcript	Het
Ptpn13	T	G	5: 103,649,294 (GRCm39)	F232L	probably benign	Het
Reps1	T	C	10: 17,979,982 (GRCm39)	S114P	probably damaging	Het
Scarf2	T	A	16: 17,621,466 (GRCm39)		probably null	Het
Sdha	A	T	13: 74,498,218 (GRCm39)		probably benign	Het
Secisbp2l	A	T	2: 125,594,897 (GRCm39)	V146D	possibly damaging	Het
Slc26a8	T	A	17: 28,873,833 (GRCm39)	T385S	probably benign	Het
Slc4a1	G	A	11: 102,244,092 (GRCm39)	T679M	probably benign	Het
Tbc1d14	T	A	5: 36,677,896 (GRCm39)	E353V	probably damaging	Het
Thap2	T	A	10: 115,208,665 (GRCm39)	K152*	probably null	Het
Thbd	A	T	2: 148,249,655 (GRCm39)	I71N	probably damaging	Het
V1ra8	T	A	6: 90,180,036 (GRCm39)	W80R	probably damaging	Het
Vmn1r218	A	G	13: 23,320,743 (GRCm39)	Y30C	probably benign	Het
Vmn2r60	C	A	7: 41,845,049 (GRCm39)	T804K	probably damaging	Het
Vmn2r68	A	T	7: 84,882,926 (GRCm39)	D275E	probably benign	Het
Vps13c	A	G	9: 67,858,721 (GRCm39)	I2724V	probably benign	Het
Xrcc5	C	A	1: 72,385,430 (GRCm39)	P507Q	probably damaging	Het
Zfp120	A	T	2: 149,959,499 (GRCm39)	Y274*	probably null	Het
Zfp780b	C	A	7: 27,674,173 (GRCm39)		probably null	Het

Other mutations in Mapk6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01364:Mapk6	APN	9	75,296,072 (GRCm39)	missense	possibly damaging	0.79
IGL01843:Mapk6	APN	9	75,297,572 (GRCm39)	missense	probably damaging	1.00
IGL03060:Mapk6	APN	9	75,305,084 (GRCm39)	missense	probably damaging	0.98
PIT4651001:Mapk6	UTSW	9	75,304,869 (GRCm39)	missense	possibly damaging	0.90
R0056:Mapk6	UTSW	9	75,296,098 (GRCm39)	missense	possibly damaging	0.66
R0056:Mapk6	UTSW	9	75,296,098 (GRCm39)	missense	possibly damaging	0.66
R0659:Mapk6	UTSW	9	75,305,244 (GRCm39)	missense	probably damaging	0.99
R1673:Mapk6	UTSW	9	75,302,851 (GRCm39)	missense	probably damaging	1.00
R3419:Mapk6	UTSW	9	75,305,039 (GRCm39)	missense	probably damaging	1.00
R4798:Mapk6	UTSW	9	75,295,714 (GRCm39)	missense	probably benign
R5117:Mapk6	UTSW	9	75,305,017 (GRCm39)	missense	possibly damaging	0.56
R5190:Mapk6	UTSW	9	75,295,626 (GRCm39)	missense	probably damaging	1.00
R5579:Mapk6	UTSW	9	75,295,344 (GRCm39)	missense	possibly damaging	0.63
R6792:Mapk6	UTSW	9	75,302,830 (GRCm39)	missense	probably damaging	1.00
R7237:Mapk6	UTSW	9	75,304,895 (GRCm39)	missense	probably damaging	1.00
R9328:Mapk6	UTSW	9	75,305,252 (GRCm39)	missense	possibly damaging	0.70
R9775:Mapk6	UTSW	9	75,295,668 (GRCm39)	missense	possibly damaging	0.63
RF013:Mapk6	UTSW	9	75,295,542 (GRCm39)	frame shift	probably null
RF044:Mapk6	UTSW	9	75,295,542 (GRCm39)	frame shift	probably null
RF057:Mapk6	UTSW	9	75,295,540 (GRCm39)	frame shift	probably null
X0025:Mapk6	UTSW	9	75,302,790 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- CAGTGGGAAATGGGGTTAGAATC -3'
(R):5'- CCTGTTGTGCACGAGGAGG -3'

Sequencing Primer
(F):5'- TCTTCCAGAGGACCTGAGTTCAG -3'
(R):5'- GATCGGCAGGAGCTTCTCAG -3'

Posted On

2016-10-05