Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL00332:Prpf4b'

4317

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Prpf4b

Ensembl Gene

ENSMUSG00000021413

Gene Name

pre-mRNA processing factor 4B

Synonyms

Prpk, Prp4k, Prp4

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

IGL00332

Quality Score

Status

Chromosome

Chromosomal Location

35059285-35090047 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 35067890 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 240 (S240P)

Ref Sequence

ENSEMBL: ENSMUSP00000152654 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000077853] [ENSMUST00000222509]

AlphaFold

Q61136

Predicted Effect

probably benign
Transcript: ENSMUST00000077853
AA Change: S240P

PolyPhen 2 Score 0.226 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000077019
Gene: ENSMUSG00000021413
AA Change: S240P

Domain	Start	End	E-Value	Type
low complexity region	40	62	N/A	INTRINSIC
low complexity region	68	80	N/A	INTRINSIC
coiled coil region	102	123	N/A	INTRINSIC
low complexity region	142	150	N/A	INTRINSIC
low complexity region	156	170	N/A	INTRINSIC
low complexity region	178	197	N/A	INTRINSIC
low complexity region	210	233	N/A	INTRINSIC
low complexity region	238	249	N/A	INTRINSIC
low complexity region	284	294	N/A	INTRINSIC
low complexity region	299	324	N/A	INTRINSIC
low complexity region	340	360	N/A	INTRINSIC
low complexity region	390	417	N/A	INTRINSIC
low complexity region	435	497	N/A	INTRINSIC
low complexity region	521	535	N/A	INTRINSIC
low complexity region	562	581	N/A	INTRINSIC
S_TKc	687	1003	4.99e-74	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000220965

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000221639

Predicted Effect

probably benign
Transcript: ENSMUST00000222509
AA Change: S240P

PolyPhen 2 Score 0.226 (Sensitivity: 0.91; Specificity: 0.88)

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Pre-mRNA splicing occurs in two sequential transesterification steps, and the protein encoded by this gene is thought to be involved in pre-mRNA splicing and in signal transduction. This protein belongs to a kinase family that includes serine/arginine-rich protein-specific kinases and cyclin-dependent kinases (CDKs). This protein is regarded as a CDK-like kinase (Clk) with homology to mitogen-activated protein kinases (MAPKs). [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acp6	T	C	3: 97,083,737 (GRCm39)	Y404H	possibly damaging	Het
Adgrv1	T	A	13: 81,620,996 (GRCm39)		probably benign	Het
Akap13	A	G	7: 75,378,667 (GRCm39)	K2107E	probably damaging	Het
Ankrd42	A	G	7: 92,233,662 (GRCm39)		probably benign	Het
Apba3	C	T	10: 81,108,901 (GRCm39)	P555S	probably damaging	Het
Aplnr	A	G	2: 84,967,985 (GRCm39)	S337G	probably benign	Het
Arhgef40	A	G	14: 52,226,417 (GRCm39)	N154D	probably damaging	Het
Asb14	A	G	14: 26,633,998 (GRCm39)	K401R	probably benign	Het
Aspn	C	A	13: 49,719,968 (GRCm39)	T328K	probably benign	Het
Barhl2	C	T	5: 106,603,365 (GRCm39)	A265T	possibly damaging	Het
Brca2	T	A	5: 150,463,363 (GRCm39)	H1042Q	probably benign	Het
C3	A	G	17: 57,533,004 (GRCm39)	L167P	probably benign	Het
Ccdc33	A	G	9: 57,977,257 (GRCm39)		probably benign	Het
Cdk10	T	A	8: 123,957,063 (GRCm39)	M222K	possibly damaging	Het
Cfap45	C	T	1: 172,362,912 (GRCm39)		probably benign	Het
Chil3	T	A	3: 106,056,017 (GRCm39)	N352I	probably damaging	Het
Chn2	G	T	6: 54,272,907 (GRCm39)		probably null	Het
Cimip2b	G	A	4: 43,428,158 (GRCm39)	R100W	possibly damaging	Het
Cpt1b	T	C	15: 89,305,066 (GRCm39)	E394G	probably benign	Het
Fcgr2b	T	A	1: 170,788,799 (GRCm39)	N273I	possibly damaging	Het
Fpr-rs7	G	A	17: 20,333,480 (GRCm39)	Q337*	probably null	Het
Fras1	T	A	5: 96,887,217 (GRCm39)	N2666K	possibly damaging	Het
Gfra3	C	T	18: 34,824,601 (GRCm39)		probably null	Het
Gm4553	T	C	7: 141,718,964 (GRCm39)	S155G	unknown	Het
Gpr75	C	T	11: 30,841,590 (GRCm39)	T165I	probably damaging	Het
Gzmd	A	T	14: 56,367,737 (GRCm39)	C179S	probably damaging	Het
Hand1	T	G	11: 57,722,575 (GRCm39)	H13P	probably damaging	Het
Irak3	C	T	10: 120,013,972 (GRCm39)		probably null	Het
Isl2	T	A	9: 55,452,253 (GRCm39)	L275Q	possibly damaging	Het
Itgb2	T	C	10: 77,393,240 (GRCm39)	V367A	probably damaging	Het
Katna1	T	C	10: 7,638,758 (GRCm39)		probably benign	Het
Myh6	A	G	14: 55,184,450 (GRCm39)	M1627T	probably benign	Het
Naprt	A	G	15: 75,765,164 (GRCm39)	Y187H	probably damaging	Het
Nedd4	T	A	9: 72,642,371 (GRCm39)	V550E	probably damaging	Het
Nt5c2	A	G	19: 46,884,954 (GRCm39)	V252A	possibly damaging	Het
Or8k39	T	C	2: 86,563,579 (GRCm39)	I126V	possibly damaging	Het
Or9i16	C	T	19: 13,864,945 (GRCm39)	V210I	probably benign	Het
P2ry2	A	G	7: 100,647,393 (GRCm39)	V304A	probably damaging	Het
Pde4dip	T	C	3: 97,674,593 (GRCm39)	N108D	probably benign	Het
Pdgfrl	A	G	8: 41,438,660 (GRCm39)	T199A	probably damaging	Het
Plaa	A	G	4: 94,470,844 (GRCm39)	Y431H	probably benign	Het
Pls1	A	T	9: 95,664,472 (GRCm39)	I177N	possibly damaging	Het
Plxna2	T	C	1: 194,472,138 (GRCm39)	F1035L	probably damaging	Het
Ppp6r3	A	T	19: 3,564,729 (GRCm39)		probably null	Het
Reg2	T	A	6: 78,383,204 (GRCm39)	Y50*	probably null	Het
Rev3l	C	T	10: 39,682,965 (GRCm39)	T361I	probably benign	Het
Rps4l	A	G	6: 148,256,383 (GRCm39)		probably benign	Het
Scn11a	A	T	9: 119,598,982 (GRCm39)	F1183I	probably damaging	Het
Sh2b2	T	C	5: 136,253,273 (GRCm39)	E327G	probably damaging	Het
Shank2	A	G	7: 143,965,584 (GRCm39)	K1057R	probably damaging	Het
Sim2	T	A	16: 93,915,803 (GRCm39)	Y255*	probably null	Het
Snx9	A	G	17: 5,949,636 (GRCm39)	N112S	probably benign	Het
Sphkap	T	A	1: 83,258,237 (GRCm39)	I169F	probably damaging	Het
Spink5	A	G	18: 44,100,111 (GRCm39)	T43A	probably benign	Het
Stac2	C	T	11: 97,932,005 (GRCm39)	S265N	probably benign	Het
Tbx20	A	G	9: 24,670,044 (GRCm39)	V91A	probably damaging	Het
Tgfbr2	C	T	9: 115,939,257 (GRCm39)	R190H	probably damaging	Het
Ubr2	A	G	17: 47,301,916 (GRCm39)		probably null	Het
Wdfy3	C	T	5: 102,063,204 (GRCm39)		probably null	Het
Wdr82	T	C	9: 106,061,449 (GRCm39)	V166A	probably benign	Het
Zfhx4	C	T	3: 5,307,401 (GRCm39)	A209V	probably damaging	Het
Zfp518b	T	A	5: 38,831,109 (GRCm39)	T299S	possibly damaging	Het

Other mutations in Prpf4b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00639:Prpf4b	APN	13	35,083,156 (GRCm39)	missense	possibly damaging	0.70
IGL00901:Prpf4b	APN	13	35,078,465 (GRCm39)	missense	probably damaging	1.00
IGL01301:Prpf4b	APN	13	35,068,274 (GRCm39)	missense	probably benign	0.23
IGL02027:Prpf4b	APN	13	35,073,554 (GRCm39)	missense	probably benign	0.35
IGL02111:Prpf4b	APN	13	35,067,944 (GRCm39)	missense	probably benign	0.23
IGL02256:Prpf4b	APN	13	35,083,861 (GRCm39)	missense	probably damaging	0.98
IGL02590:Prpf4b	APN	13	35,072,129 (GRCm39)	unclassified	probably benign
IGL03389:Prpf4b	APN	13	35,084,439 (GRCm39)	splice site	probably benign
IGL03411:Prpf4b	APN	13	35,079,342 (GRCm39)	missense	probably damaging	1.00
ANU18:Prpf4b	UTSW	13	35,068,274 (GRCm39)	missense	probably benign	0.23
PIT4260001:Prpf4b	UTSW	13	35,068,274 (GRCm39)	missense	probably benign	0.23
PIT4696001:Prpf4b	UTSW	13	35,083,825 (GRCm39)	missense	probably benign	0.01
R0114:Prpf4b	UTSW	13	35,074,471 (GRCm39)	splice site	probably benign
R0157:Prpf4b	UTSW	13	35,068,014 (GRCm39)	unclassified	probably benign
R1551:Prpf4b	UTSW	13	35,078,426 (GRCm39)	missense	possibly damaging	0.91
R1587:Prpf4b	UTSW	13	35,076,133 (GRCm39)	missense	probably benign	0.09
R2105:Prpf4b	UTSW	13	35,068,214 (GRCm39)	unclassified	probably benign
R2152:Prpf4b	UTSW	13	35,084,402 (GRCm39)	missense	probably benign	0.04
R2432:Prpf4b	UTSW	13	35,067,324 (GRCm39)	unclassified	probably benign
R3802:Prpf4b	UTSW	13	35,067,665 (GRCm39)	unclassified	probably benign
R3803:Prpf4b	UTSW	13	35,067,665 (GRCm39)	unclassified	probably benign
R3804:Prpf4b	UTSW	13	35,067,665 (GRCm39)	unclassified	probably benign
R3982:Prpf4b	UTSW	13	35,068,196 (GRCm39)	unclassified	probably benign
R4603:Prpf4b	UTSW	13	35,072,147 (GRCm39)	unclassified	probably benign
R4633:Prpf4b	UTSW	13	35,084,425 (GRCm39)	missense	probably damaging	1.00
R4649:Prpf4b	UTSW	13	35,083,954 (GRCm39)	missense	probably benign	0.06
R4651:Prpf4b	UTSW	13	35,083,954 (GRCm39)	missense	probably benign	0.06
R4653:Prpf4b	UTSW	13	35,083,954 (GRCm39)	missense	probably benign	0.06
R5022:Prpf4b	UTSW	13	35,067,582 (GRCm39)	unclassified	probably benign
R5028:Prpf4b	UTSW	13	35,083,958 (GRCm39)	missense	probably damaging	1.00
R5232:Prpf4b	UTSW	13	35,067,573 (GRCm39)	unclassified	probably benign
R5313:Prpf4b	UTSW	13	35,078,532 (GRCm39)	missense	probably damaging	1.00
R5440:Prpf4b	UTSW	13	35,068,076 (GRCm39)	unclassified	probably benign
R5511:Prpf4b	UTSW	13	35,068,037 (GRCm39)	unclassified	probably benign
R5863:Prpf4b	UTSW	13	35,083,111 (GRCm39)	missense	possibly damaging	0.51
R5981:Prpf4b	UTSW	13	35,070,693 (GRCm39)	missense	probably benign	0.23
R6360:Prpf4b	UTSW	13	35,085,416 (GRCm39)	missense	probably damaging	0.99
R6398:Prpf4b	UTSW	13	35,084,354 (GRCm39)	missense	probably damaging	1.00
R6556:Prpf4b	UTSW	13	35,080,015 (GRCm39)	missense	probably damaging	0.98
R6880:Prpf4b	UTSW	13	35,078,436 (GRCm39)	missense	possibly damaging	0.69
R7133:Prpf4b	UTSW	13	35,085,477 (GRCm39)	missense	probably benign	0.02
R7148:Prpf4b	UTSW	13	35,078,455 (GRCm39)	missense	probably benign	0.04
R7208:Prpf4b	UTSW	13	35,067,994 (GRCm39)	missense	unknown
R7966:Prpf4b	UTSW	13	35,085,428 (GRCm39)	missense	probably damaging	0.96
R8241:Prpf4b	UTSW	13	35,079,974 (GRCm39)	missense	probably damaging	1.00
R8298:Prpf4b	UTSW	13	35,072,166 (GRCm39)	missense	unknown
R9609:Prpf4b	UTSW	13	35,068,032 (GRCm39)	missense	unknown
R9710:Prpf4b	UTSW	13	35,083,870 (GRCm39)	missense	probably damaging	1.00
RF002:Prpf4b	UTSW	13	35,068,219 (GRCm39)	missense	unknown

Posted On

2012-04-20