Mutagenetix > Incidental Mutation

Incidental Mutation 'R5489:Nrip3'

431981

Institutional Source

Beutler Lab

Gene Symbol

Nrip3

Ensembl Gene

ENSMUSG00000034825

Gene Name

nuclear receptor interacting protein 3

Synonyms

A330103B05Rik, D7H11orf14, ICRFP703N2430Q5.2, ICRFP703B1614Q5.2

MMRRC Submission

043050-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.066) question?

Stock #

R5489 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

109357263-109380752 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 109361045 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 210 (T210A)

Ref Sequence

ENSEMBL: ENSMUSP00000044116 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000033331] [ENSMUST00000033331] [ENSMUST00000041460] [ENSMUST00000041460] [ENSMUST00000207400]

AlphaFold

Q9JJR9

Predicted Effect

probably damaging
Transcript: ENSMUST00000033331
AA Change: T199A

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000033331
Gene: ENSMUSG00000034825
AA Change: T199A

Domain	Start	End	E-Value	Type
low complexity region	42	57	N/A	INTRINSIC
Pfam:Asp_protease	86	208	6e-16	PFAM
Pfam:Asp_protease_2	109	201	3.4e-11	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000033331
AA Change: T199A

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000033331
Gene: ENSMUSG00000034825
AA Change: T199A

Domain	Start	End	E-Value	Type
low complexity region	42	57	N/A	INTRINSIC
Pfam:Asp_protease	86	208	6e-16	PFAM
Pfam:Asp_protease_2	109	201	3.4e-11	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000041460
AA Change: T210A

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000044116
Gene: ENSMUSG00000034825
AA Change: T210A

Domain	Start	End	E-Value	Type
low complexity region	53	68	N/A	INTRINSIC
Pfam:Asp_protease	97	219	9.7e-16	PFAM
Pfam:Asp_protease_2	120	214	1e-10	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000041460
AA Change: T210A

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000044116
Gene: ENSMUSG00000034825
AA Change: T210A

Domain	Start	End	E-Value	Type
low complexity region	53	68	N/A	INTRINSIC
Pfam:Asp_protease	97	219	9.7e-16	PFAM
Pfam:Asp_protease_2	120	214	1e-10	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000207400

Meta Mutation Damage Score

0.3838

Coding Region Coverage

1x: 98.4%
3x: 97.4%
10x: 95.4%
20x: 91.6%

Validation Efficiency

95% (57/60)

Allele List at MGI

Other mutations in this stock

Total: 50 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
5730455P16Rik	A	T	11: 80,268,778 (GRCm39)	M1K	probably null	Het
Abca14	T	A	7: 119,851,473 (GRCm39)	V817D	probably damaging	Het
Aqr	T	C	2: 113,963,554 (GRCm39)	N632S	probably damaging	Het
Bms1	T	C	6: 118,390,706 (GRCm39)	T208A	possibly damaging	Het
Brd8	A	T	18: 34,741,698 (GRCm39)		probably null	Het
Caln1	G	T	5: 130,443,673 (GRCm39)	R2L	possibly damaging	Het
Cdk17	A	G	10: 93,068,274 (GRCm39)	T344A	probably damaging	Het
Chd8	A	T	14: 52,450,505 (GRCm39)		probably benign	Het
Clec14a	A	G	12: 58,315,035 (GRCm39)	F196L	probably damaging	Het
Clec2f	T	C	6: 128,997,449 (GRCm39)		noncoding transcript	Het
Col4a1	A	T	8: 11,362,550 (GRCm39)		probably benign	Het
Col9a3	G	A	2: 180,258,318 (GRCm39)	R579H	probably damaging	Het
Cyb561	A	G	11: 105,826,349 (GRCm39)	V202A	probably benign	Het
Cyp2c69	T	G	19: 39,839,603 (GRCm39)	Q340P	probably null	Het
D630003M21Rik	T	A	2: 158,058,941 (GRCm39)	T320S	probably benign	Het
D630045J12Rik	A	T	6: 38,173,782 (GRCm39)	S129T	possibly damaging	Het
Ddx54	A	G	5: 120,762,786 (GRCm39)	T636A	probably benign	Het
Dnah8	T	G	17: 31,009,930 (GRCm39)	F3774V	probably damaging	Het
Ern1	A	G	11: 106,298,355 (GRCm39)	S674P	probably damaging	Het
Fam13a	A	T	6: 59,001,303 (GRCm39)	L8Q	probably null	Het
Fam83b	T	C	9: 76,452,881 (GRCm39)	N62S	probably benign	Het
Foxred1	A	T	9: 35,121,266 (GRCm39)	V94E	probably damaging	Het
Frmd8	T	A	19: 5,902,680 (GRCm39)	Q457L	probably damaging	Het
Gvin3	T	A	7: 106,200,797 (GRCm39)		noncoding transcript	Het
Heatr6	A	G	11: 83,665,258 (GRCm39)	E741G	probably damaging	Het
Hnrnpab	A	G	11: 51,495,640 (GRCm39)	L133S	probably damaging	Het
Itga2	A	T	13: 114,979,971 (GRCm39)	W1077R	probably damaging	Het
Kat6b	A	G	14: 21,719,332 (GRCm39)	D1228G	probably damaging	Het
Klk14	G	A	7: 43,341,501 (GRCm39)	C51Y	probably damaging	Het
Kmt2a	A	T	9: 44,752,335 (GRCm39)		probably benign	Het
Leap2	T	G	11: 53,313,240 (GRCm39)	*77C	probably null	Het
Mmp20	A	G	9: 7,643,958 (GRCm39)		probably null	Het
Mrps9	T	G	1: 42,937,593 (GRCm39)		probably benign	Het
Muc2	T	C	7: 141,305,169 (GRCm39)	S158P	probably benign	Het
Mus81	T	C	19: 5,537,917 (GRCm39)		probably benign	Het
Or52s1b	T	C	7: 102,822,658 (GRCm39)	Y62C	probably damaging	Het
Padi2	T	C	4: 140,671,799 (GRCm39)	F509S	probably damaging	Het
Pcdha12	A	G	18: 37,155,260 (GRCm39)	T660A	probably benign	Het
Pdzd2	G	A	15: 12,382,762 (GRCm39)	P1197L	probably benign	Het
Rec8	A	T	14: 55,860,283 (GRCm39)	Q291L	probably benign	Het
Robo4	CGG	CG	9: 37,322,786 (GRCm39)		probably null	Het
Sart3	A	G	5: 113,909,441 (GRCm39)	W86R	probably damaging	Het
Slc17a4	A	G	13: 24,082,825 (GRCm39)		probably null	Het
Tdpoz1	T	A	3: 93,577,974 (GRCm39)	Y270F	possibly damaging	Het
Thap3	T	A	4: 152,070,109 (GRCm39)		probably benign	Het
Tmem45a	T	A	16: 56,646,074 (GRCm39)		probably null	Het
Trim43a	A	T	9: 88,464,229 (GRCm39)	I47F	probably damaging	Het
Vps13b	A	T	15: 35,770,688 (GRCm39)	I2044L	probably benign	Het
Zfp735	G	A	11: 73,601,419 (GRCm39)	W121*	probably null	Het
Zmym2	A	G	14: 57,193,712 (GRCm39)	K1176E	possibly damaging	Het

Other mutations in Nrip3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01700:Nrip3	APN	7	109,361,074 (GRCm39)	missense	possibly damaging	0.95
IGL02253:Nrip3	APN	7	109,360,951 (GRCm39)	splice site	probably null
PIT4696001:Nrip3	UTSW	7	109,364,714 (GRCm39)	nonsense	probably null
R0140:Nrip3	UTSW	7	109,361,022 (GRCm39)	unclassified	probably benign
R1179:Nrip3	UTSW	7	109,362,762 (GRCm39)	missense	probably damaging	1.00
R1828:Nrip3	UTSW	7	109,365,763 (GRCm39)	missense	probably benign	0.00
R5488:Nrip3	UTSW	7	109,361,045 (GRCm39)	missense	probably damaging	1.00
R6282:Nrip3	UTSW	7	109,362,686 (GRCm39)	splice site	probably null
R7134:Nrip3	UTSW	7	109,364,695 (GRCm39)	missense	probably damaging	0.99
R8414:Nrip3	UTSW	7	109,362,735 (GRCm39)	missense	possibly damaging	0.72
R9161:Nrip3	UTSW	7	109,365,777 (GRCm39)	missense	probably damaging	1.00
R9201:Nrip3	UTSW	7	109,360,906 (GRCm39)	missense	probably benign	0.05
R9641:Nrip3	UTSW	7	109,362,793 (GRCm39)	missense	probably damaging	1.00
Z1177:Nrip3	UTSW	7	109,365,782 (GRCm39)	missense	probably benign	0.34

Predicted Primers

PCR Primer
(F):5'- ATGCCCTGACTCATGTACTTAC -3'
(R):5'- AAAGTACAGGTTCAACGGCTG -3'

Sequencing Primer
(F):5'- GTCGTCATTCACAGAAACTGTC -3'
(R):5'- ACAGGTTCAACGGCTGTTTATTG -3'

Posted On

2016-10-05