Mutagenetix > Incidental Mutation

Incidental Mutation 'R5496:Gm3604'

432371

Institutional Source

Beutler Lab

Gene Symbol

Gm3604

Ensembl Gene

ENSMUSG00000094942

Gene Name

predicted gene 3604

Synonyms

MMRRC Submission

043057-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.128) question?

Stock #

R5496 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

62516142-62530991 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 62519393 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Threonine at position 59 (S59T)

Ref Sequence

ENSEMBL: ENSMUSP00000139845 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000107989] [ENSMUST00000187656] [ENSMUST00000202194]

AlphaFold

A0A087WPN2

Predicted Effect

probably benign
Transcript: ENSMUST00000107989
AA Change: S58T

PolyPhen 2 Score 0.177 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000103623
Gene: ENSMUSG00000094942
AA Change: S58T

Domain	Start	End	E-Value	Type
KRAB	3	65	4.49e-17	SMART
ZnF_C2H2	132	154	2.71e-2	SMART
ZnF_C2H2	160	182	1.3e-4	SMART
ZnF_C2H2	188	210	5.21e-4	SMART
ZnF_C2H2	216	238	1.82e-3	SMART
ZnF_C2H2	244	266	7.78e-3	SMART
ZnF_C2H2	272	294	3.69e-4	SMART
ZnF_C2H2	300	322	3.95e-4	SMART
ZnF_C2H2	328	350	9.08e-4	SMART
ZnF_C2H2	356	378	1.45e-2	SMART
ZnF_C2H2	384	406	1.92e-2	SMART
ZnF_C2H2	412	434	1.3e-4	SMART
ZnF_C2H2	440	462	4.87e-4	SMART
ZnF_C2H2	468	490	1.4e-4	SMART
ZnF_C2H2	496	518	3.95e-4	SMART
ZnF_C2H2	524	546	2.29e1	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000187656
AA Change: S59T

PolyPhen 2 Score 0.845 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000139845
Gene: ENSMUSG00000094942
AA Change: S59T

Domain	Start	End	E-Value	Type
KRAB	4	66	1.9e-19	SMART
ZnF_C2H2	133	155	1.2e-4	SMART
ZnF_C2H2	161	183	5.5e-7	SMART
ZnF_C2H2	189	211	2.3e-6	SMART
ZnF_C2H2	217	239	7.5e-6	SMART
ZnF_C2H2	245	267	3.4e-5	SMART
ZnF_C2H2	273	295	1.5e-6	SMART
ZnF_C2H2	301	323	1.7e-6	SMART
ZnF_C2H2	329	351	3.7e-6	SMART
ZnF_C2H2	357	379	6.3e-5	SMART
ZnF_C2H2	385	407	7.8e-5	SMART
ZnF_C2H2	413	435	5.5e-7	SMART
ZnF_C2H2	441	463	2e-6	SMART
ZnF_C2H2	469	491	5.8e-7	SMART
ZnF_C2H2	497	519	1.6e-6	SMART
ZnF_C2H2	525	547	9.6e-2	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000202194

SMART Domains

Protein: ENSMUSP00000144048
Gene: ENSMUSG00000094942

Domain	Start	End	E-Value	Type
KRAB	4	65	1.2e-19	SMART

Coding Region Coverage

1x: 98.3%
3x: 97.3%
10x: 95.1%
20x: 90.2%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 65 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb1a	G	A	5: 8,724,818 (GRCm39)	V84I	probably benign	Het
Adam10	T	G	9: 70,630,021 (GRCm39)	F151C	probably damaging	Het
Akap6	A	G	12: 53,187,436 (GRCm39)	S1617G	possibly damaging	Het
Ano6	T	A	15: 95,865,495 (GRCm39)		probably null	Het
Atmin	A	G	8: 117,683,911 (GRCm39)	T524A	probably benign	Het
Bicra	C	T	7: 15,721,766 (GRCm39)	V584I	probably benign	Het
Carmil1	G	A	13: 24,339,433 (GRCm39)	R54C	probably damaging	Het
Cbln1	A	G	8: 88,198,324 (GRCm39)	I127T	possibly damaging	Het
Ccl26	A	G	5: 135,592,217 (GRCm39)	V40A	probably benign	Het
Cdh20	T	A	1: 109,976,647 (GRCm39)	I104N	probably damaging	Het
Cdt1	C	T	8: 123,297,239 (GRCm39)	R311W	probably damaging	Het
Cfap91	A	G	16: 38,141,855 (GRCm39)	I359T	probably damaging	Het
Col12a1	A	G	9: 79,509,467 (GRCm39)		probably benign	Het
Csf2rb	A	G	15: 78,224,761 (GRCm39)	E173G	probably damaging	Het
Cyb561	A	G	11: 105,828,545 (GRCm39)	Y94H	probably damaging	Het
Cyp3a16	T	A	5: 145,404,341 (GRCm39)	K34M	probably damaging	Het
Diras2	C	T	13: 52,661,786 (GRCm39)	V174M	probably benign	Het
Dnah7a	T	G	1: 53,496,927 (GRCm39)	M3110L	probably benign	Het
Dyrk2	T	C	10: 118,695,956 (GRCm39)	E434G	probably damaging	Het
Ebag9	T	G	15: 44,503,816 (GRCm39)	*214E	probably null	Het
Egln3	A	T	12: 54,250,110 (GRCm39)	W80R	probably damaging	Het
Eps15l1	A	G	8: 73,136,619 (GRCm39)	Y336H	probably benign	Het
Gak	A	G	5: 108,724,483 (GRCm39)	S1076P	probably benign	Het
Glra1	T	C	11: 55,418,241 (GRCm39)	Y168C	probably damaging	Het
Glrx2	T	A	1: 143,620,945 (GRCm39)	M108K	probably damaging	Het
Gm8212	A	T	14: 44,438,614 (GRCm39)		probably benign	Het
Gmcl1	G	T	6: 86,674,507 (GRCm39)	A457D	probably damaging	Het
H2-M11	T	C	17: 36,858,871 (GRCm39)	F137S	possibly damaging	Het
Ighv1-55	C	G	12: 115,172,140 (GRCm39)	W3S	probably damaging	Het
Il22	T	G	10: 118,041,002 (GRCm39)	V36G	possibly damaging	Het
Ints1	G	A	5: 139,740,953 (GRCm39)	A1904V	probably benign	Het
Iqgap2	A	G	13: 95,766,561 (GRCm39)	Y1481H	probably damaging	Het
Kcnn3	C	T	3: 89,516,797 (GRCm39)	A402V	possibly damaging	Het
Kif18b	A	T	11: 102,804,568 (GRCm39)	I362N	possibly damaging	Het
Kif5c	C	G	2: 49,620,202 (GRCm39)	A223G	possibly damaging	Het
Kntc1	A	G	5: 123,922,245 (GRCm39)	D948G	probably benign	Het
Krba1	A	G	6: 48,383,290 (GRCm39)	T229A	possibly damaging	Het
Leprot	T	A	4: 101,515,093 (GRCm39)	I113N	probably damaging	Het
Lrp1b	T	C	2: 40,817,985 (GRCm39)	D2415G	probably benign	Het
Mnd1	T	A	3: 83,995,481 (GRCm39)	D171V	probably damaging	Het
Mthfsd	A	T	8: 121,825,553 (GRCm39)	Y339*	probably null	Het
Nfatc2	G	A	2: 168,378,198 (GRCm39)	T268M	probably damaging	Het
Or14j10	T	C	17: 37,935,469 (GRCm39)	D19G	probably benign	Het
Or52d3	G	C	7: 104,229,701 (GRCm39)	A283P	probably damaging	Het
Or8h7	G	T	2: 86,720,658 (GRCm39)	P287Q	probably damaging	Het
Or8h7	G	C	2: 86,720,659 (GRCm39)	P287A	probably damaging	Het
Pan3	G	A	5: 147,463,938 (GRCm39)		probably null	Het
Pde6a	A	T	18: 61,386,736 (GRCm39)		probably null	Het
Prss39	T	C	1: 34,539,342 (GRCm39)	I194T	possibly damaging	Het
Rfx8	T	C	1: 39,709,507 (GRCm39)	S507G	probably benign	Het
Rif1	T	C	2: 51,988,928 (GRCm39)	S774P	probably damaging	Het
Sh3bp5	C	A	14: 31,099,452 (GRCm39)	R265L	probably benign	Het
Slc45a2	C	T	15: 11,027,871 (GRCm39)	T480I	probably damaging	Het
Smurf1	C	A	5: 144,819,403 (GRCm39)	E601*	probably null	Het
Stau2	T	C	1: 16,460,245 (GRCm39)	S231G	probably damaging	Het
Timp2	T	G	11: 118,194,707 (GRCm39)	M161L	probably benign	Het
Tlr5	T	C	1: 182,801,197 (GRCm39)	L167P	probably damaging	Het
Trhr	G	A	15: 44,060,932 (GRCm39)	A151T	probably benign	Het
Unc13d	A	G	11: 115,957,534 (GRCm39)	V807A	probably damaging	Het
Usp2	T	C	9: 43,996,505 (GRCm39)	V7A	possibly damaging	Het
Uspl1	A	G	5: 149,146,589 (GRCm39)	T447A	probably damaging	Het
Zan	A	G	5: 137,434,607 (GRCm39)	I2232T	unknown	Het
Zfp12	C	A	5: 143,230,550 (GRCm39)	C292*	probably null	Het
Zfp850	A	C	7: 27,706,771 (GRCm39)	M43R	probably damaging	Het
Zic5	G	A	14: 122,696,755 (GRCm39)	T620M	unknown	Het

Other mutations in Gm3604

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01869:Gm3604	APN	13	62,517,954 (GRCm39)	missense	probably damaging	1.00
IGL02601:Gm3604	APN	13	62,517,990 (GRCm39)	missense	possibly damaging	0.79
IGL03386:Gm3604	APN	13	62,517,981 (GRCm39)	missense	possibly damaging	0.95
R1539:Gm3604	UTSW	13	62,519,414 (GRCm39)	missense	possibly damaging	0.70
R1771:Gm3604	UTSW	13	62,517,888 (GRCm39)	nonsense	probably null
R1776:Gm3604	UTSW	13	62,517,888 (GRCm39)	nonsense	probably null
R1919:Gm3604	UTSW	13	62,517,756 (GRCm39)	missense	probably benign	0.02
R1954:Gm3604	UTSW	13	62,517,025 (GRCm39)	missense	probably damaging	0.97
R2093:Gm3604	UTSW	13	62,517,420 (GRCm39)	missense	possibly damaging	0.50
R2291:Gm3604	UTSW	13	62,519,657 (GRCm39)	missense	probably damaging	0.99
R2909:Gm3604	UTSW	13	62,516,832 (GRCm39)	missense	probably benign	0.43
R3195:Gm3604	UTSW	13	62,517,868 (GRCm39)	nonsense	probably null
R3196:Gm3604	UTSW	13	62,517,868 (GRCm39)	nonsense	probably null
R3924:Gm3604	UTSW	13	62,518,044 (GRCm39)	missense	probably damaging	0.99
R4328:Gm3604	UTSW	13	62,517,079 (GRCm39)	missense	possibly damaging	0.88
R4543:Gm3604	UTSW	13	62,517,970 (GRCm39)	missense	probably benign
R4830:Gm3604	UTSW	13	62,516,857 (GRCm39)	missense	probably damaging	0.98
R5129:Gm3604	UTSW	13	62,517,588 (GRCm39)	missense	probably benign	0.00
R6184:Gm3604	UTSW	13	62,519,659 (GRCm39)	missense	probably damaging	1.00
R6426:Gm3604	UTSW	13	62,517,436 (GRCm39)	missense	probably damaging	1.00
R6925:Gm3604	UTSW	13	62,517,204 (GRCm39)	missense	probably benign	0.16
R7080:Gm3604	UTSW	13	62,518,109 (GRCm39)	missense	probably damaging	1.00
R7182:Gm3604	UTSW	13	62,519,689 (GRCm39)	missense	probably damaging	0.99
R7572:Gm3604	UTSW	13	62,518,060 (GRCm39)	missense	probably damaging	1.00
R7750:Gm3604	UTSW	13	62,517,810 (GRCm39)	missense	possibly damaging	0.92
R7960:Gm3604	UTSW	13	62,517,587 (GRCm39)	missense	probably damaging	0.97
R8023:Gm3604	UTSW	13	62,517,683 (GRCm39)	missense	probably damaging	1.00
R8062:Gm3604	UTSW	13	62,518,155 (GRCm39)	missense	probably damaging	0.98
R8093:Gm3604	UTSW	13	62,517,363 (GRCm39)	missense	probably damaging	0.99
R8532:Gm3604	UTSW	13	62,516,769 (GRCm39)	missense	possibly damaging	0.57
R9262:Gm3604	UTSW	13	62,517,697 (GRCm39)	missense	probably damaging	0.99
R9659:Gm3604	UTSW	13	62,519,724 (GRCm39)	missense	possibly damaging	0.93
R9673:Gm3604	UTSW	13	62,517,969 (GRCm39)	missense	probably benign	0.00
R9788:Gm3604	UTSW	13	62,519,724 (GRCm39)	missense	possibly damaging	0.93

Predicted Primers

PCR Primer
(F):5'- CCGAGTGCTGGGATTACAGG -3'
(R):5'- ATGAGGACGTGCATGTGAACTT -3'

Sequencing Primer
(F):5'- TGTCCTCTTTCTTAAAGGAAGGC -3'
(R):5'- TGCTGGAGACATTCAGGAACCTC -3'

Posted On

2016-10-05