Mutagenetix > Incidental Mutation

Incidental Mutation 'R5482:Trmt9b'

434389

Institutional Source

Beutler Lab

Gene Symbol

Trmt9b

Ensembl Gene

ENSMUSG00000039620

Gene Name

tRNA methyltransferase 9B

Synonyms

6430573F11Rik

MMRRC Submission

043043-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.071) question?

Stock #

R5482 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

36924643-36981738 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 36979203 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Leucine at position 269 (M269L)

Ref Sequence

ENSEMBL: ENSMUSP00000127875 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000135373] [ENSMUST00000147525] [ENSMUST00000152039] [ENSMUST00000171777]

AlphaFold

Q80WQ4

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000125492

Predicted Effect

probably benign
Transcript: ENSMUST00000135373

SMART Domains

Protein: ENSMUSP00000120524
Gene: ENSMUSG00000039620

Domain	Start	End	E-Value	Type
Pfam:Methyltransf_11	49	114	7.7e-9	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000147525
AA Change: M269L

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000119912
Gene: ENSMUSG00000039620
AA Change: M269L

Domain	Start	End	E-Value	Type
Pfam:Methyltransf_8	4	158	3.6e-9	PFAM
Pfam:Ubie_methyltran	9	153	2.9e-7	PFAM
Pfam:Methyltransf_23	23	184	4.2e-12	PFAM
Pfam:Methyltransf_31	42	186	1.3e-10	PFAM
Pfam:Methyltransf_25	48	135	4.2e-9	PFAM
Pfam:Methyltransf_12	49	137	4.1e-11	PFAM
Pfam:Methyltransf_11	49	139	3.6e-18	PFAM
low complexity region	377	387	N/A	INTRINSIC
low complexity region	410	430	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000152039

SMART Domains

Protein: ENSMUSP00000119288
Gene: ENSMUSG00000039620

Domain	Start	End	E-Value	Type
Pfam:Methyltransf_11	49	109	2.9e-8	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000171777
AA Change: M269L

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000127875
Gene: ENSMUSG00000039620
AA Change: M269L

Domain	Start	End	E-Value	Type
Pfam:Methyltransf_8	4	158	3.6e-9	PFAM
Pfam:Ubie_methyltran	9	153	2.9e-7	PFAM
Pfam:Methyltransf_23	23	186	1.5e-11	PFAM
Pfam:Methyltransf_31	42	186	3.5e-10	PFAM
Pfam:Methyltransf_25	48	135	4.3e-9	PFAM
Pfam:Methyltransf_12	49	137	4.1e-11	PFAM
Pfam:Methyltransf_11	49	139	3.2e-18	PFAM
low complexity region	377	387	N/A	INTRINSIC
low complexity region	410	430	N/A	INTRINSIC

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 98.9%
3x: 97.4%
10x: 94.5%
20x: 87.6%

Validation Efficiency

99% (68/69)

Allele List at MGI

Other mutations in this stock

Total: 51 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9230109A22Rik	T	C	15: 25,139,036 (GRCm39)		noncoding transcript	Het
Abca15	T	C	7: 119,968,370 (GRCm39)	L801P	probably damaging	Het
Acap3	A	G	4: 155,984,613 (GRCm39)	D212G	probably benign	Het
Acsl6	G	A	11: 54,217,964 (GRCm39)	D166N	probably damaging	Het
Acy1	T	C	9: 106,311,838 (GRCm39)		probably benign	Het
Adgrl3	A	G	5: 81,942,360 (GRCm39)	N1368S	probably damaging	Het
Akap5	T	C	12: 76,375,600 (GRCm39)	I344T	probably benign	Het
Aplp1	A	G	7: 30,139,600 (GRCm39)	F399S	probably damaging	Het
Arap3	A	G	18: 38,107,727 (GRCm39)	S1302P	possibly damaging	Het
Bik	T	G	15: 83,428,335 (GRCm39)	V121G	probably damaging	Het
Birc6	A	T	17: 74,948,777 (GRCm39)	M3069L	possibly damaging	Het
Birc6	A	G	17: 74,969,685 (GRCm39)	T4237A	probably damaging	Het
Btn2a2	T	C	13: 23,670,557 (GRCm39)	N59D	probably benign	Het
Cabyr	A	G	18: 12,884,496 (GRCm39)	S328G	possibly damaging	Het
Cfap57	C	T	4: 118,426,838 (GRCm39)	G1067R	probably benign	Het
Cryl1	A	T	14: 57,550,469 (GRCm39)	F132I	probably damaging	Het
Dipk1a	C	G	5: 108,057,529 (GRCm39)	C343S	probably damaging	Het
Dnah8	G	A	17: 31,019,521 (GRCm39)	E3865K	probably damaging	Het
Dock3	G	A	9: 106,855,937 (GRCm39)	R741*	probably null	Het
Fsip2	C	T	2: 82,815,654 (GRCm39)	L3796F	possibly damaging	Het
Gm10722	A	C	9: 3,001,041 (GRCm39)	Y39S	probably benign	Het
Gm5535	C	A	2: 144,016,492 (GRCm39)		noncoding transcript	Het
Gmcl1	A	T	6: 86,695,055 (GRCm39)	M202K	probably damaging	Het
Hecw2	T	A	1: 53,965,360 (GRCm39)	M489L	probably benign	Het
Lrrk1	A	G	7: 65,980,418 (GRCm39)	I254T	probably benign	Het
Lrrn3	G	A	12: 41,502,386 (GRCm39)	L644F	probably benign	Het
Lrrn3	A	C	12: 41,502,387 (GRCm39)	C643W	probably damaging	Het
Nr2f6	A	T	8: 71,827,182 (GRCm39)	I373N	probably damaging	Het
Nt5dc3	A	G	10: 86,647,395 (GRCm39)	Y130C	probably damaging	Het
Or5b12	T	C	19: 12,897,269 (GRCm39)	T135A	probably damaging	Het
Or6c3	T	C	10: 129,308,947 (GRCm39)	Y129H	probably benign	Het
Otogl	T	A	10: 107,657,802 (GRCm39)	I1043F	probably damaging	Het
Padi3	G	A	4: 140,523,154 (GRCm39)	T302I	probably damaging	Het
Pcdhgb5	A	G	18: 37,864,585 (GRCm39)	N127D	probably damaging	Het
Pign	A	G	1: 105,474,435 (GRCm39)	F876L	probably benign	Het
Pip5k1c	A	G	10: 81,128,897 (GRCm39)	E2G	probably damaging	Het
Ppp1r18	G	A	17: 36,184,771 (GRCm39)	E141K	probably damaging	Het
Ralbp1	A	C	17: 66,168,563 (GRCm39)	Y247*	probably null	Het
Ripply2	A	G	9: 86,897,620 (GRCm39)	E8G	possibly damaging	Het
Rufy3	TAAGCA	TA	5: 88,785,191 (GRCm39)		probably null	Het
Skint2	T	G	4: 112,483,076 (GRCm39)	C160W	probably damaging	Het
Sun2	C	T	15: 79,621,712 (GRCm39)	R172Q	probably benign	Het
Syna	A	G	5: 134,588,028 (GRCm39)	L307P	possibly damaging	Het
Tlcd3b	A	G	7: 126,426,660 (GRCm39)	T78A	possibly damaging	Het
Trappc12	T	C	12: 28,741,324 (GRCm39)	K795R	probably damaging	Het
Ttll11	A	G	2: 35,642,418 (GRCm39)	S638P	probably damaging	Het
Usp2	G	A	9: 44,000,480 (GRCm39)		probably null	Het
Vmn2r26	A	T	6: 124,038,285 (GRCm39)	E620V	possibly damaging	Het
Wdr36	A	T	18: 32,974,957 (GRCm39)	H103L	probably benign	Het
Wnt5b	T	C	6: 119,423,392 (GRCm39)	T78A	probably benign	Het
Zc2hc1b	C	T	10: 13,029,270 (GRCm39)	R146Q	probably damaging	Het

Other mutations in Trmt9b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00518:Trmt9b	APN	8	36,979,453 (GRCm39)	missense	possibly damaging	0.90
IGL01360:Trmt9b	APN	8	36,979,713 (GRCm39)	missense	probably benign	0.08
IGL01364:Trmt9b	APN	8	36,979,501 (GRCm39)	missense	probably benign	0.03
IGL03401:Trmt9b	APN	8	36,972,823 (GRCm39)	missense	probably damaging	1.00
Bear_market	UTSW	8	36,965,637 (GRCm39)	critical splice donor site	probably null
R2161:Trmt9b	UTSW	8	36,972,804 (GRCm39)	missense	probably damaging	1.00
R2230:Trmt9b	UTSW	8	36,979,707 (GRCm39)	missense	probably damaging	1.00
R2232:Trmt9b	UTSW	8	36,979,707 (GRCm39)	missense	probably damaging	1.00
R4250:Trmt9b	UTSW	8	36,979,366 (GRCm39)	missense	probably benign	0.05
R4432:Trmt9b	UTSW	8	36,965,632 (GRCm39)	missense	probably damaging	1.00
R4491:Trmt9b	UTSW	8	36,972,760 (GRCm39)	missense	probably damaging	1.00
R5242:Trmt9b	UTSW	8	36,979,084 (GRCm39)	missense	probably benign	0.02
R5261:Trmt9b	UTSW	8	36,979,078 (GRCm39)	missense	probably benign	0.07
R5579:Trmt9b	UTSW	8	36,979,195 (GRCm39)	missense	probably benign	0.00
R5594:Trmt9b	UTSW	8	36,979,452 (GRCm39)	missense	probably benign	0.00
R5797:Trmt9b	UTSW	8	36,965,569 (GRCm39)	nonsense	probably null
R6481:Trmt9b	UTSW	8	36,965,637 (GRCm39)	critical splice donor site	probably null
R7504:Trmt9b	UTSW	8	36,979,309 (GRCm39)	missense	probably benign	0.03
R8119:Trmt9b	UTSW	8	36,965,576 (GRCm39)	nonsense	probably null
R8169:Trmt9b	UTSW	8	36,978,857 (GRCm39)	missense	probably damaging	0.97
R8962:Trmt9b	UTSW	8	36,972,729 (GRCm39)	missense	probably damaging	1.00
R9034:Trmt9b	UTSW	8	36,978,954 (GRCm39)	nonsense	probably null
R9035:Trmt9b	UTSW	8	36,978,954 (GRCm39)	nonsense	probably null
R9647:Trmt9b	UTSW	8	36,979,210 (GRCm39)	missense	probably benign	0.00
X0057:Trmt9b	UTSW	8	36,979,142 (GRCm39)	nonsense	probably null
X0065:Trmt9b	UTSW	8	36,979,010 (GRCm39)	missense	possibly damaging	0.71

Predicted Primers

PCR Primer
(F):5'- AGGGCAGATGTGATTCCAAACG -3'
(R):5'- CCCTTGTGTCCACTGAAGTTG -3'

Sequencing Primer
(F):5'- GATGTGATTCCAAACGGTCCC -3'
(R):5'- CCACTGAAGTTGTCTGATGTGCC -3'

Posted On

2016-10-06