Mutagenetix > Incidental Mutation

Incidental Mutation 'R5538:Tle2'

434943

Institutional Source

Beutler Lab

Gene Symbol

Tle2

Ensembl Gene

ENSMUSG00000034771

Gene Name

transducin-like enhancer of split 2

Synonyms

Grg2

MMRRC Submission

043096-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.368) question?

Stock #

R5538 (G1)

Quality Score

181

Status

Validated

Chromosome

Chromosomal Location

81410395-81426679 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 81416418 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Proline at position 180 (L180P)

Ref Sequence

ENSEMBL: ENSMUSP00000121125 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000131794] [ENSMUST00000135211] [ENSMUST00000136341] [ENSMUST00000143285] [ENSMUST00000146358] [ENSMUST00000146916]

AlphaFold

Q9WVB2

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000129798

Predicted Effect

probably benign
Transcript: ENSMUST00000131794

Predicted Effect

possibly damaging
Transcript: ENSMUST00000135211
AA Change: L146P

PolyPhen 2 Score 0.879 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000117453
Gene: ENSMUSG00000034771
AA Change: L146P

Domain	Start	End	E-Value	Type
Pfam:TLE_N	1	122	3e-68	PFAM
low complexity region	133	160	N/A	INTRINSIC
low complexity region	172	194	N/A	INTRINSIC
low complexity region	262	277	N/A	INTRINSIC
low complexity region	332	352	N/A	INTRINSIC
WD40	436	473	5.6e-3	SMART
WD40	479	520	9.6e-2	SMART
WD40	525	564	1.88e-4	SMART
WD40	567	606	3.72e-8	SMART
Blast:WD40	609	647	8e-18	BLAST
WD40	649	688	1.2e-2	SMART
WD40	689	729	2.07e-1	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000136254

Predicted Effect

probably benign
Transcript: ENSMUST00000136341

SMART Domains

Protein: ENSMUSP00000121585
Gene: ENSMUSG00000034771

Domain	Start	End	E-Value	Type
Pfam:TLE_N	1	121	1.3e-73	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000140433

Predicted Effect

unknown
Transcript: ENSMUST00000143285
AA Change: L137P

SMART Domains

Protein: ENSMUSP00000122074
Gene: ENSMUSG00000034771
AA Change: L137P

Domain	Start	End	E-Value	Type
Pfam:TLE_N	1	78	1.5e-49	PFAM
Pfam:TLE_N	76	114	1.3e-11	PFAM
low complexity region	124	151	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000146358
AA Change: L180P

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000121125
Gene: ENSMUSG00000034771
AA Change: L180P

Domain	Start	End	E-Value	Type
Pfam:TLE_N	1	64	2e-31	PFAM
Pfam:TLE_N	81	154	4.3e-34	PFAM
low complexity region	167	194	N/A	INTRINSIC
low complexity region	206	228	N/A	INTRINSIC
low complexity region	296	311	N/A	INTRINSIC
low complexity region	366	386	N/A	INTRINSIC
WD40	471	508	5.6e-3	SMART
WD40	514	555	9.6e-2	SMART
WD40	560	599	1.88e-4	SMART
WD40	602	641	3.72e-8	SMART
Blast:WD40	644	682	9e-18	BLAST
WD40	684	723	1.2e-2	SMART
WD40	724	764	2.07e-1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000146916
AA Change: L157P

PolyPhen 2 Score 0.434 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000121173
Gene: ENSMUSG00000034771
AA Change: L157P

Domain	Start	End	E-Value	Type
Pfam:TLE_N	1	134	1.6e-75	PFAM
low complexity region	144	171	N/A	INTRINSIC
low complexity region	183	205	N/A	INTRINSIC
low complexity region	273	288	N/A	INTRINSIC
low complexity region	343	363	N/A	INTRINSIC
WD40	435	472	5.6e-3	SMART
WD40	478	519	9.6e-2	SMART
WD40	524	563	1.88e-4	SMART
WD40	566	605	3.72e-8	SMART
WD40	648	687	1.2e-2	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000151470

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000162771

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000145878

Meta Mutation Damage Score

0.3807

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.3%
20x: 95.1%

Validation Efficiency

94% (73/78)

Allele List at MGI

Other mutations in this stock

Total: 69 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adgrv1	C	A	13: 81,581,808 (GRCm39)	R4745S	probably benign	Het
Ank3	A	G	10: 69,823,257 (GRCm39)	E642G	probably damaging	Het
Arhgap11a	G	T	2: 113,667,875 (GRCm39)	D375E	probably benign	Het
Arl8b	C	A	6: 108,760,297 (GRCm39)	L28M	probably damaging	Het
Bbs2	G	A	8: 94,816,391 (GRCm39)	T157M	probably damaging	Het
C2cd3	T	A	7: 100,104,700 (GRCm39)		probably null	Het
C6	T	A	15: 4,844,311 (GRCm39)	I911N	possibly damaging	Het
Cc2d2a	T	C	5: 43,852,518 (GRCm39)	I365T	possibly damaging	Het
Cd46	T	G	1: 194,750,478 (GRCm39)		probably null	Het
Ceacam3	A	T	7: 16,892,346 (GRCm39)	D363V	probably damaging	Het
Cep63	A	T	9: 102,465,992 (GRCm39)	L678*	probably null	Het
Clasrp	A	C	7: 19,318,707 (GRCm39)		probably benign	Het
Clk2	T	A	3: 89,082,962 (GRCm39)	Y412N	probably damaging	Het
Col24a1	C	T	3: 144,998,882 (GRCm39)	A5V	probably damaging	Het
Cox16	T	C	12: 81,531,703 (GRCm39)	N13D	possibly damaging	Het
Cybb	C	G	X: 9,316,989 (GRCm39)	D246H	probably benign	Het
Dhx32	A	T	7: 133,324,946 (GRCm39)	M437K	probably benign	Het
Dnm2	T	C	9: 21,416,923 (GRCm39)	F819L	probably benign	Het
Dpysl4	A	G	7: 138,671,906 (GRCm39)	T85A	probably benign	Het
Dspp	A	T	5: 104,323,096 (GRCm39)	K80*	probably null	Het
Dync2h1	T	C	9: 7,168,630 (GRCm39)		probably benign	Het
Ern1	A	G	11: 106,312,727 (GRCm39)	V218A	possibly damaging	Het
Fbn2	G	A	18: 58,204,973 (GRCm39)	R1157C	probably benign	Het
Fez1	T	A	9: 36,780,172 (GRCm39)	I323N	probably damaging	Het
Fmo9	T	A	1: 166,501,198 (GRCm39)	T199S	probably benign	Het
Fry	T	A	5: 150,419,313 (GRCm39)	L915Q	probably damaging	Het
Gatd1	A	G	7: 140,986,758 (GRCm39)		probably benign	Het
Gm10719	T	C	9: 3,018,962 (GRCm39)	L69S	probably benign	Het
Gnpda2	A	T	5: 69,735,394 (GRCm39)	H230Q	probably damaging	Het
Gramd1c	T	A	16: 43,802,455 (GRCm39)	N652I	probably damaging	Het
H2-T13	T	A	17: 36,392,178 (GRCm39)	H178L	probably benign	Het
Hells	T	A	19: 38,942,096 (GRCm39)	F462Y	probably benign	Het
Htr7	A	G	19: 35,947,235 (GRCm39)	F260L	probably benign	Het
Itsn1	C	A	16: 91,580,990 (GRCm39)	A23D	probably damaging	Het
Jak3	A	G	8: 72,131,417 (GRCm39)	D94G	probably benign	Het
Kctd16	T	A	18: 40,390,319 (GRCm39)	Y97*	probably null	Het
Kif20b	A	T	19: 34,930,364 (GRCm39)	K25*	probably null	Het
Klf2	T	C	8: 73,073,316 (GRCm39)	L40P	probably damaging	Het
Kmt2a	A	G	9: 44,731,639 (GRCm39)		probably benign	Het
Kmt2d	G	A	15: 98,749,990 (GRCm39)		probably benign	Het
Lonrf1	T	A	8: 36,690,178 (GRCm39)		probably null	Het
Lrp1b	A	T	2: 40,587,486 (GRCm39)	I154K	unknown	Het
Mybpc1	T	A	10: 88,381,891 (GRCm39)	I600L	possibly damaging	Het
Npnt	T	C	3: 132,610,724 (GRCm39)	N285S	probably damaging	Het
Or4c12b	T	A	2: 89,646,964 (GRCm39)	F92Y	probably damaging	Het
Or51h5	A	G	7: 102,577,728 (GRCm39)	T298A	probably damaging	Het
Or6c69	T	A	10: 129,747,871 (GRCm39)	Y92F	probably benign	Het
Or6n1	T	C	1: 173,917,544 (GRCm39)	*313R	probably null	Het
Pcnx1	T	C	12: 81,907,183 (GRCm39)	V13A	probably damaging	Het
Phkb	G	A	8: 86,648,756 (GRCm39)	V191I	possibly damaging	Het
Pnpla6	A	G	8: 3,581,508 (GRCm39)	M594V	probably benign	Het
Potefam3e	A	C	8: 19,799,430 (GRCm39)		probably null	Het
Prkdc	A	G	16: 15,469,333 (GRCm39)	E146G	probably damaging	Het
Ror1	T	C	4: 100,298,208 (GRCm39)	M527T	probably benign	Het
Scnm1	A	G	3: 95,037,066 (GRCm39)		probably benign	Het
Skint11	A	T	4: 114,088,959 (GRCm39)	N251I	probably damaging	Het
Slc19a3	T	A	1: 83,000,282 (GRCm39)	N245I	possibly damaging	Het
Slc1a3	A	T	15: 8,675,188 (GRCm39)	D272E	probably damaging	Het
Smok2b	T	A	17: 13,454,440 (GRCm39)	V200D	possibly damaging	Het
Sspo	T	C	6: 48,429,112 (GRCm39)	Y417H	probably damaging	Het
Stk11ip	C	A	1: 75,504,979 (GRCm39)	S388R	probably damaging	Het
Svep1	T	C	4: 58,049,282 (GRCm39)		probably null	Het
Sytl2	A	G	7: 90,038,114 (GRCm39)	I525V	probably benign	Het
Tie1	T	C	4: 118,343,390 (GRCm39)	N158D	probably benign	Het
Txlnb	T	C	10: 17,714,657 (GRCm39)	L363P	probably damaging	Het
Upk3b	C	G	5: 136,072,890 (GRCm39)	A258G	probably benign	Het
Usp32	A	T	11: 84,908,612 (GRCm39)	D1031E	possibly damaging	Het
Vmn2r116	C	T	17: 23,620,041 (GRCm39)	L592F	probably benign	Het
Zfp607b	A	G	7: 27,402,294 (GRCm39)	H250R	probably damaging	Het

Other mutations in Tle2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00691:Tle2	APN	10	81,417,573 (GRCm39)	missense	probably benign	0.12
IGL02651:Tle2	APN	10	81,422,723 (GRCm39)	missense	probably damaging	1.00
IGL02809:Tle2	APN	10	81,422,196 (GRCm39)	splice site	probably null
IGL03235:Tle2	APN	10	81,422,085 (GRCm39)	missense	probably benign	0.22
IGL03307:Tle2	APN	10	81,426,074 (GRCm39)	missense	probably damaging	1.00
foxbat	UTSW	10	81,422,147 (GRCm39)	nonsense	probably null
Illyushin	UTSW	10	81,424,706 (GRCm39)	missense	probably damaging	1.00
R5011_Tle2_517	UTSW	10	81,420,531 (GRCm39)	missense	probably damaging	1.00
PIT4515001:Tle2	UTSW	10	81,422,964 (GRCm39)	missense	possibly damaging	0.72
R0394:Tle2	UTSW	10	81,413,482 (GRCm39)	missense	probably damaging	1.00
R0744:Tle2	UTSW	10	81,424,781 (GRCm39)	missense	probably damaging	1.00
R0826:Tle2	UTSW	10	81,422,148 (GRCm39)	missense	possibly damaging	0.95
R0833:Tle2	UTSW	10	81,424,781 (GRCm39)	missense	probably damaging	1.00
R1796:Tle2	UTSW	10	81,425,331 (GRCm39)	critical splice donor site	probably null
R2067:Tle2	UTSW	10	81,416,385 (GRCm39)	missense	probably damaging	1.00
R2184:Tle2	UTSW	10	81,426,111 (GRCm39)	missense	probably damaging	1.00
R2198:Tle2	UTSW	10	81,426,147 (GRCm39)	missense	probably damaging	1.00
R4439:Tle2	UTSW	10	81,417,516 (GRCm39)	missense	possibly damaging	0.62
R4440:Tle2	UTSW	10	81,417,516 (GRCm39)	missense	possibly damaging	0.62
R4441:Tle2	UTSW	10	81,417,516 (GRCm39)	missense	possibly damaging	0.62
R4513:Tle2	UTSW	10	81,423,394 (GRCm39)	missense	probably damaging	1.00
R4839:Tle2	UTSW	10	81,413,518 (GRCm39)	missense	probably damaging	1.00
R4863:Tle2	UTSW	10	81,424,725 (GRCm39)	missense	possibly damaging	0.88
R5011:Tle2	UTSW	10	81,420,531 (GRCm39)	missense	probably damaging	1.00
R5505:Tle2	UTSW	10	81,417,574 (GRCm39)	missense	probably benign	0.00
R5790:Tle2	UTSW	10	81,426,149 (GRCm39)	missense	probably damaging	1.00
R5917:Tle2	UTSW	10	81,416,750 (GRCm39)	critical splice donor site	probably null
R6176:Tle2	UTSW	10	81,423,168 (GRCm39)	missense	probably damaging	0.99
R6200:Tle2	UTSW	10	81,424,706 (GRCm39)	missense	probably damaging	1.00
R6914:Tle2	UTSW	10	81,422,190 (GRCm39)	missense	probably damaging	1.00
R7367:Tle2	UTSW	10	81,416,152 (GRCm39)	missense	probably damaging	0.99
R7600:Tle2	UTSW	10	81,422,147 (GRCm39)	nonsense	probably null
R7729:Tle2	UTSW	10	81,422,981 (GRCm39)	missense	probably damaging	0.99
R8333:Tle2	UTSW	10	81,413,518 (GRCm39)	missense	probably damaging	1.00
R8511:Tle2	UTSW	10	81,423,830 (GRCm39)	missense	probably damaging	1.00
R9562:Tle2	UTSW	10	81,417,567 (GRCm39)	missense	probably benign	0.11
R9565:Tle2	UTSW	10	81,417,567 (GRCm39)	missense	probably benign	0.11
T0970:Tle2	UTSW	10	81,416,119 (GRCm39)	missense	possibly damaging	0.71
Z1177:Tle2	UTSW	10	81,418,280 (GRCm39)	missense	possibly damaging	0.95

Predicted Primers

PCR Primer
(F):5'- CAGCTGGTCTTAGGAGATGC -3'
(R):5'- GTGTTCCCAAGGACAAACAGC -3'

Sequencing Primer
(F):5'- GTCTTAGGAGATGCCCTGCTC -3'
(R):5'- GGACAAACAGCACGAACATTG -3'

Posted On

2016-10-24