Mutagenetix > Incidental Mutation

Incidental Mutation 'R5554:Aarsd1'

435303

Institutional Source

Beutler Lab

Gene Symbol

Aarsd1

Ensembl Gene

ENSMUSG00000075528

Gene Name

alanyl-tRNA synthetase domain containing 1

Synonyms

2310044P18Rik

MMRRC Submission

043111-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.573) question?

Stock #

R5554 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

101297665-101308441 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 101304807 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Leucine at position 227 (R227L)

Ref Sequence

ENSEMBL: ENSMUSP00000102880 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000070395] [ENSMUST00000103102] [ENSMUST00000107252] [ENSMUST00000107257] [ENSMUST00000107259]

AlphaFold

Q3THG9

Predicted Effect

probably benign
Transcript: ENSMUST00000070395
AA Change: R96L

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000067912
Gene: ENSMUSG00000075528
AA Change: R96L

Domain	Start	End	E-Value	Type
Pfam:tRNA-synt_2c	8	101	1.5e-8	PFAM
tRNA_SAD	196	239	1.43e-6	SMART
low complexity region	276	293	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000103102

SMART Domains

Protein: ENSMUSP00000099391
Gene: ENSMUSG00000097487

Domain	Start	End	E-Value	Type
Pfam:CS	6	80	7.3e-9	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000107252

SMART Domains

Protein: ENSMUSP00000102873
Gene: ENSMUSG00000097487

Domain	Start	End	E-Value	Type
Pfam:CS	6	80	9.6e-9	PFAM
low complexity region	141	149	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000107257
AA Change: R209L

PolyPhen 2 Score 0.015 (Sensitivity: 0.96; Specificity: 0.79)

SMART Domains

Protein: ENSMUSP00000102878
Gene: ENSMUSG00000097239
AA Change: R209L

Domain	Start	End	E-Value	Type
Pfam:tRNA-synt_2c	91	214	1.4e-8	PFAM
tRNA_SAD	309	352	1.43e-6	SMART
low complexity region	389	406	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000107259
AA Change: R227L

PolyPhen 2 Score 0.015 (Sensitivity: 0.96; Specificity: 0.79)

SMART Domains

Protein: ENSMUSP00000102880
Gene: ENSMUSG00000097239
AA Change: R227L

Domain	Start	End	E-Value	Type
Pfam:tRNA-synt_2c	109	232	3.4e-9	PFAM
tRNA_SAD	327	370	1.43e-6	SMART
low complexity region	407	424	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000125472

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133240

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000189049

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000140123

Meta Mutation Damage Score

0.1430

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.6%
20x: 96.1%

Validation Efficiency

97% (73/75)

Allele List at MGI

Other mutations in this stock

Total: 68 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adamtsl1	A	G	4: 86,195,182 (GRCm39)	Q533R	possibly damaging	Het
Adgb	C	T	10: 10,216,217 (GRCm39)	R1524H	probably damaging	Het
Ank2	A	T	3: 126,792,622 (GRCm39)	N739K	possibly damaging	Het
Ankrd39	C	T	1: 36,581,062 (GRCm39)	G96R	probably damaging	Het
Anxa10	G	A	8: 62,514,080 (GRCm39)	P249L	possibly damaging	Het
Banp	G	A	8: 122,718,334 (GRCm39)	E183K	probably damaging	Het
BC051665	C	G	13: 60,932,435 (GRCm39)	L83F	probably damaging	Het
Btn1a1	A	T	13: 23,643,295 (GRCm39)	F385I	possibly damaging	Het
Chchd4	A	T	6: 91,441,999 (GRCm39)	*140R	probably null	Het
Dcpp2	T	C	17: 24,119,545 (GRCm39)	Y120H	probably damaging	Het
Dlx2	G	A	2: 71,375,805 (GRCm39)	R173C	possibly damaging	Het
Dmbt1	C	A	7: 130,701,030 (GRCm39)	Y1069*	probably null	Het
Dop1a	T	A	9: 86,403,710 (GRCm39)	F1637I	probably damaging	Het
Dusp18	T	C	11: 3,847,202 (GRCm39)	I64T	probably damaging	Het
Evi5l	A	G	8: 4,256,491 (GRCm39)		probably benign	Het
Fiz1	T	C	7: 5,015,849 (GRCm39)	H47R	probably damaging	Het
Fndc3b	G	T	3: 27,697,162 (GRCm39)	P17T	possibly damaging	Het
Foxa1	T	A	12: 57,589,077 (GRCm39)	Q381L	probably benign	Het
Gda	A	G	19: 21,405,837 (GRCm39)		probably null	Het
Gm10044	T	C	14: 7,771,181 (GRCm38)		noncoding transcript	Het
Gm12258	T	A	11: 58,749,294 (GRCm39)	S156R	possibly damaging	Het
Gm973	A	G	1: 59,566,131 (GRCm39)	R117G	probably benign	Het
Grwd1	C	T	7: 45,480,064 (GRCm39)	V48I	probably damaging	Het
Ifi209	T	A	1: 173,468,763 (GRCm39)	S198T	probably benign	Het
Inka2	T	A	3: 105,623,930 (GRCm39)	S82R	possibly damaging	Het
Itga1	A	T	13: 115,129,010 (GRCm39)	C549*	probably null	Het
Kmt2c	C	A	5: 25,499,608 (GRCm39)	G511C	probably damaging	Het
Knstrn	T	C	2: 118,664,444 (GRCm39)		probably benign	Het
Lrp2	T	C	2: 69,382,768 (GRCm39)	Y39C	possibly damaging	Het
Maco1	T	C	4: 134,555,445 (GRCm39)	I343V	probably benign	Het
Micos10	T	C	4: 138,833,218 (GRCm39)		probably benign	Het
N4bp2	T	C	5: 65,965,457 (GRCm39)	Y1169H	probably benign	Het
Nbr1	C	T	11: 101,455,633 (GRCm39)	T129I	probably benign	Het
Or52e8	A	C	7: 104,625,189 (GRCm39)	M1R	probably null	Het
Or5k15	A	T	16: 58,710,169 (GRCm39)	M138K	possibly damaging	Het
Or7g25	T	C	9: 19,160,039 (GRCm39)	I219V	probably benign	Het
Oxct1	T	A	15: 4,120,677 (GRCm39)	F254I	probably benign	Het
Patj	T	A	4: 98,342,633 (GRCm39)	S576T	possibly damaging	Het
Pdxdc1	A	T	16: 13,690,363 (GRCm39)	C202S	probably benign	Het
Pet100	A	T	8: 3,672,381 (GRCm39)	I19F	probably damaging	Het
Pik3r5	T	C	11: 68,385,059 (GRCm39)	Y655H	probably damaging	Het
Pkhd1	A	G	1: 20,151,476 (GRCm39)	S3807P	probably damaging	Het
Ptma	A	G	1: 86,454,649 (GRCm39)	T8A	probably damaging	Het
Ptpn3	G	T	4: 57,240,843 (GRCm39)	N257K	probably damaging	Het
R3hdm1	C	A	1: 128,164,409 (GRCm39)	Q1108K	probably benign	Het
Rimbp2	T	C	5: 128,857,406 (GRCm39)	D815G	probably damaging	Het
Scn10a	A	G	9: 119,523,196 (GRCm39)	F66L	probably benign	Het
Selenot	T	C	3: 58,484,296 (GRCm39)		probably null	Het
Serpinb8	A	G	1: 107,526,705 (GRCm39)	T82A	probably benign	Het
Serpini2	G	A	3: 75,175,295 (GRCm39)		probably benign	Het
Slc1a6	G	T	10: 78,631,816 (GRCm39)	G214V	probably benign	Het
Slc5a6	C	A	5: 31,195,444 (GRCm39)	A425S	probably damaging	Het
Smo	C	A	6: 29,736,123 (GRCm39)	N38K	possibly damaging	Het
Smtn	A	T	11: 3,470,811 (GRCm39)	C909*	probably null	Het
Sntg2	C	T	12: 30,308,040 (GRCm39)	R215H	probably benign	Het
Stk4	T	A	2: 163,941,645 (GRCm39)	V287E	probably benign	Het
Tdrd7	A	G	4: 46,005,358 (GRCm39)	D388G	possibly damaging	Het
Ttn	A	T	2: 76,642,652 (GRCm39)	F13294L	probably damaging	Het
Ube2j1	T	G	4: 33,040,745 (GRCm39)	F84V	probably damaging	Het
Ugt3a1	A	G	15: 9,370,287 (GRCm39)	Q477R	probably damaging	Het
Utf1	T	C	7: 139,523,859 (GRCm39)	S25P	probably benign	Het
Vmn1r184	A	T	7: 25,966,413 (GRCm39)	H53L	probably damaging	Het
Vmn2r13	A	T	5: 109,339,860 (GRCm39)	N38K	possibly damaging	Het
Vps13a	C	T	19: 16,699,775 (GRCm39)	D756N	probably damaging	Het
Vwa1	G	T	4: 155,857,695 (GRCm39)	D34E	probably damaging	Het
Zfhx2	A	C	14: 55,301,774 (GRCm39)	L2070R	probably damaging	Het
Zfp984	A	G	4: 147,840,362 (GRCm39)	V163A	probably benign	Het
Zp3r	A	T	1: 130,511,208 (GRCm39)	M325K	probably benign	Het

Other mutations in Aarsd1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01810:Aarsd1	APN	11	101,308,185 (GRCm39)	nonsense	probably null
R0462:Aarsd1	UTSW	11	101,304,917 (GRCm39)	missense	probably damaging	1.00
R1885:Aarsd1	UTSW	11	101,302,227 (GRCm39)	missense	probably benign	0.33
R1886:Aarsd1	UTSW	11	101,302,227 (GRCm39)	missense	probably benign	0.33
R1909:Aarsd1	UTSW	11	101,301,057 (GRCm39)	splice site	probably null
R2382:Aarsd1	UTSW	11	101,304,904 (GRCm39)	missense	probably damaging	0.99
R3820:Aarsd1	UTSW	11	101,301,971 (GRCm39)	missense	probably damaging	1.00
R3821:Aarsd1	UTSW	11	101,301,971 (GRCm39)	missense	probably damaging	1.00
R3822:Aarsd1	UTSW	11	101,301,971 (GRCm39)	missense	probably damaging	1.00
R4034:Aarsd1	UTSW	11	101,302,158 (GRCm39)	missense	probably damaging	1.00
R4701:Aarsd1	UTSW	11	101,301,986 (GRCm39)	missense	probably benign	0.00
R5204:Aarsd1	UTSW	11	101,297,752 (GRCm39)	missense	probably damaging	1.00
R5327:Aarsd1	UTSW	11	101,301,203 (GRCm39)	missense	probably benign	0.30
R7342:Aarsd1	UTSW	11	101,308,018 (GRCm39)	missense	probably benign	0.00
R7574:Aarsd1	UTSW	11	101,301,970 (GRCm39)	missense	probably damaging	1.00
R7851:Aarsd1	UTSW	11	101,300,838 (GRCm39)	splice site	probably null
R8306:Aarsd1	UTSW	11	101,302,194 (GRCm39)	missense	probably damaging	0.97
R8762:Aarsd1	UTSW	11	101,301,226 (GRCm39)	missense	probably benign	0.02
R9449:Aarsd1	UTSW	11	101,301,597 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- TCATAGCACACTATCTGGATCAAAG -3'
(R):5'- TAGGAAGCTCAGATTCCCGG -3'

Sequencing Primer
(F):5'- CACACTATCTGGATCAAAGCTGGTTC -3'
(R):5'- GAAGCTCAGATTCCCGGTCTGTC -3'

Posted On

2016-10-24