Incidental Mutation 'R5562:Tank'
| ID |
436646 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Tank
|
| Ensembl Gene |
ENSMUSG00000064289 |
| Gene Name |
TRAF family member-associated Nf-kappa B activator |
| Synonyms |
E430026L09Rik, I-TRAF |
| MMRRC Submission |
043119-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably essential
(E-score: 0.828)
|
| Stock # |
R5562 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
2 |
| Chromosomal Location |
61408929-61484515 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 61480552 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Threonine to Alanine
at position 363
(T363A)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000108121
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000078074]
[ENSMUST00000112494]
[ENSMUST00000112495]
[ENSMUST00000112501]
[ENSMUST00000112502]
|
| AlphaFold |
P70347 |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000078074
AA Change: T364A
PolyPhen 2
Score 0.587 (Sensitivity: 0.87; Specificity: 0.91)
|
| SMART Domains |
Protein: ENSMUSP00000077219
Gene: ENSMUSG00000064289
AA Change: T364A
| Domain | Start | End | E-Value | Type |
|---|
|
coiled coil region
|
60 |
98 |
N/A |
INTRINSIC |
|
Pfam:TBD
|
165 |
219 |
1.2e-27 |
PFAM |
|
ZnF_C2H2
|
417 |
443 |
1.81e1 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000112494
AA Change: T329A
PolyPhen 2
Score 0.195 (Sensitivity: 0.92; Specificity: 0.87)
|
| SMART Domains |
Protein: ENSMUSP00000108113
Gene: ENSMUSG00000064289
AA Change: T329A
| Domain | Start | End | E-Value | Type |
|---|
|
coiled coil region
|
22 |
63 |
N/A |
INTRINSIC |
|
Pfam:TBD
|
128 |
184 |
5.9e-34 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000112495
AA Change: T329A
PolyPhen 2
Score 0.433 (Sensitivity: 0.89; Specificity: 0.90)
|
| SMART Domains |
Protein: ENSMUSP00000108114
Gene: ENSMUSG00000064289
AA Change: T329A
| Domain | Start | End | E-Value | Type |
|---|
|
coiled coil region
|
22 |
63 |
N/A |
INTRINSIC |
|
Pfam:TBD
|
128 |
184 |
1.3e-33 |
PFAM |
|
ZnF_C2H2
|
382 |
408 |
1.81e1 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000112501
AA Change: T330A
PolyPhen 2
Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
|
| SMART Domains |
Protein: ENSMUSP00000108120
Gene: ENSMUSG00000064289
AA Change: T330A
| Domain | Start | End | E-Value | Type |
|---|
|
coiled coil region
|
26 |
64 |
N/A |
INTRINSIC |
|
Pfam:TBD
|
129 |
185 |
1.3e-33 |
PFAM |
|
ZnF_C2H2
|
383 |
409 |
1.81e1 |
SMART |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000112502
AA Change: T363A
PolyPhen 2
Score 0.587 (Sensitivity: 0.87; Specificity: 0.91)
|
| SMART Domains |
Protein: ENSMUSP00000108121
Gene: ENSMUSG00000064289
AA Change: T363A
| Domain | Start | End | E-Value | Type |
|---|
|
coiled coil region
|
56 |
97 |
N/A |
INTRINSIC |
|
Pfam:TBD
|
162 |
218 |
8.2e-34 |
PFAM |
|
ZnF_C2H2
|
416 |
442 |
1.81e1 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000136688
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000141544
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000154693
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000143515
|
| Coding Region Coverage |
- 1x: 99.9%
- 3x: 99.6%
- 10x: 98.1%
- 20x: 94.3%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The TRAF (tumor necrosis factor receptor-associated factor) family of proteins associate with and transduce signals from members of the tumor necrosis factor receptor superfamily. The protein encoded by this gene is found in the cytoplasm and can bind to TRAF1, TRAF2, or TRAF3, thereby inhibiting TRAF function by sequestering the TRAFs in a latent state in the cytoplasm. For example, the protein encoded by this gene can block TRAF2 binding to LMP1, the Epstein-Barr virus transforming protein, and inhibit LMP1-mediated NF-kappa-B activation. Three alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2010]
PHENOTYPE: Homozygous null mice develop fatal glomerulonephritis owing to deposition of immune complexes. Dendritic cells, macrophages and B cells from these mice are hyper-responsive to stimuli leading to increased production of immunoglobulins and inflammatory cytokines. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 43 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Aldh1a7 |
G |
A |
19: 20,679,628 (GRCm39) |
Q383* |
probably null |
Het |
| Alkbh3 |
A |
T |
2: 93,826,724 (GRCm39) |
|
probably null |
Het |
| Amotl1 |
G |
A |
9: 14,486,593 (GRCm39) |
P434S |
possibly damaging |
Het |
| Arfgef1 |
T |
C |
1: 10,214,971 (GRCm39) |
E1641G |
probably damaging |
Het |
| Arih2 |
T |
C |
9: 108,484,546 (GRCm39) |
T422A |
probably damaging |
Het |
| C7 |
A |
T |
15: 5,061,397 (GRCm39) |
Y317* |
probably null |
Het |
| Car4 |
A |
T |
11: 84,854,924 (GRCm39) |
M91L |
probably benign |
Het |
| Ccdc7a |
T |
C |
8: 129,785,266 (GRCm39) |
D98G |
possibly damaging |
Het |
| Cdc25b |
A |
G |
2: 131,036,678 (GRCm39) |
M493V |
probably damaging |
Het |
| Cdhr3 |
C |
G |
12: 33,101,054 (GRCm39) |
R452T |
probably benign |
Het |
| Col6a2 |
G |
A |
10: 76,435,509 (GRCm39) |
Q909* |
probably null |
Het |
| Cyp2j8 |
A |
G |
4: 96,358,890 (GRCm39) |
I343T |
probably damaging |
Het |
| Dcstamp |
G |
A |
15: 39,617,798 (GRCm39) |
C69Y |
possibly damaging |
Het |
| Dnaaf8 |
C |
A |
16: 4,791,940 (GRCm39) |
|
noncoding transcript |
Het |
| Efhc1 |
C |
T |
1: 21,043,104 (GRCm39) |
T341I |
probably damaging |
Het |
| Elovl2 |
A |
G |
13: 41,338,772 (GRCm39) |
*276Q |
probably null |
Het |
| Fnip1 |
T |
A |
11: 54,380,168 (GRCm39) |
|
probably null |
Het |
| Foxc1 |
A |
G |
13: 31,991,573 (GRCm39) |
H128R |
probably damaging |
Het |
| Gpr107 |
C |
T |
2: 31,042,375 (GRCm39) |
A2V |
probably damaging |
Het |
| Gprc5c |
G |
T |
11: 114,755,093 (GRCm39) |
V257L |
possibly damaging |
Het |
| Kif15 |
A |
T |
9: 122,807,081 (GRCm39) |
Q44H |
probably damaging |
Het |
| Masp1 |
T |
C |
16: 23,283,917 (GRCm39) |
|
probably null |
Het |
| Muc5b |
T |
C |
7: 141,400,975 (GRCm39) |
I530T |
unknown |
Het |
| Ncoa4-ps |
T |
A |
12: 119,225,957 (GRCm39) |
|
noncoding transcript |
Het |
| Nherf2 |
A |
G |
17: 24,860,798 (GRCm39) |
V137A |
probably benign |
Het |
| Nudt7 |
C |
A |
8: 114,874,723 (GRCm39) |
A93D |
probably damaging |
Het |
| Or5w1b |
T |
C |
2: 87,476,063 (GRCm39) |
I135V |
probably benign |
Het |
| Pcdha8 |
A |
G |
18: 37,126,024 (GRCm39) |
T169A |
possibly damaging |
Het |
| Prnp |
A |
G |
2: 131,778,951 (GRCm39) |
D201G |
probably damaging |
Het |
| Serinc1 |
G |
A |
10: 57,400,147 (GRCm39) |
Q167* |
probably null |
Het |
| Slc13a5 |
A |
G |
11: 72,152,865 (GRCm39) |
V35A |
probably damaging |
Het |
| Slc30a6 |
C |
T |
17: 74,719,700 (GRCm39) |
T220I |
possibly damaging |
Het |
| Slc7a7 |
T |
A |
14: 54,646,269 (GRCm39) |
M65L |
probably benign |
Het |
| Speg |
T |
A |
1: 75,403,700 (GRCm39) |
L2627Q |
probably damaging |
Het |
| Taok3 |
T |
A |
5: 117,389,029 (GRCm39) |
L478Q |
probably damaging |
Het |
| Trim55 |
A |
T |
3: 19,713,317 (GRCm39) |
M123L |
probably benign |
Het |
| Trpm2 |
A |
G |
10: 77,795,773 (GRCm39) |
V118A |
possibly damaging |
Het |
| Ttn |
A |
T |
2: 76,600,803 (GRCm39) |
Y17114N |
probably damaging |
Het |
| Unc5c |
A |
G |
3: 141,474,291 (GRCm39) |
T214A |
probably damaging |
Het |
| Ush2a |
T |
A |
1: 188,308,414 (GRCm39) |
V2021E |
probably damaging |
Het |
| Utp4 |
G |
A |
8: 107,649,557 (GRCm39) |
D669N |
probably benign |
Het |
| Zfp560 |
G |
T |
9: 20,261,883 (GRCm39) |
Y89* |
probably null |
Het |
| Zfp64 |
A |
G |
2: 168,767,642 (GRCm39) |
S657P |
probably benign |
Het |
|
| Other mutations in Tank |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL02994:Tank
|
APN |
2 |
61,480,636 (GRCm39) |
splice site |
probably benign |
|
|
malade
|
UTSW |
2 |
61,474,768 (GRCm39) |
critical splice donor site |
probably null |
|
|
marmalade
|
UTSW |
2 |
61,483,766 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1620:Tank
|
UTSW |
2 |
61,480,442 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R1671:Tank
|
UTSW |
2 |
61,480,097 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1862:Tank
|
UTSW |
2 |
61,480,256 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3918:Tank
|
UTSW |
2 |
61,474,130 (GRCm39) |
critical splice donor site |
probably null |
|
|
R4714:Tank
|
UTSW |
2 |
61,480,573 (GRCm39) |
missense |
probably benign |
0.01 |
|
R4727:Tank
|
UTSW |
2 |
61,483,876 (GRCm39) |
missense |
probably benign |
0.05 |
|
R4865:Tank
|
UTSW |
2 |
61,408,979 (GRCm39) |
start gained |
probably benign |
|
|
R4867:Tank
|
UTSW |
2 |
61,408,979 (GRCm39) |
start gained |
probably benign |
|
|
R5023:Tank
|
UTSW |
2 |
61,408,979 (GRCm39) |
start gained |
probably benign |
|
|
R5213:Tank
|
UTSW |
2 |
61,480,292 (GRCm39) |
missense |
probably benign |
0.01 |
|
R5950:Tank
|
UTSW |
2 |
61,483,913 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R6221:Tank
|
UTSW |
2 |
61,480,427 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6626:Tank
|
UTSW |
2 |
61,480,640 (GRCm39) |
splice site |
probably benign |
|
|
R6670:Tank
|
UTSW |
2 |
61,474,768 (GRCm39) |
critical splice donor site |
probably null |
|
|
R6850:Tank
|
UTSW |
2 |
61,480,346 (GRCm39) |
missense |
probably benign |
0.19 |
|
R7027:Tank
|
UTSW |
2 |
61,483,766 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7478:Tank
|
UTSW |
2 |
61,480,513 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8293:Tank
|
UTSW |
2 |
61,474,758 (GRCm39) |
missense |
possibly damaging |
0.62 |
|
R8678:Tank
|
UTSW |
2 |
61,457,287 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8866:Tank
|
UTSW |
2 |
61,409,005 (GRCm39) |
missense |
probably benign |
0.23 |
|
R9162:Tank
|
UTSW |
2 |
61,480,432 (GRCm39) |
missense |
possibly damaging |
0.59 |
|
R9628:Tank
|
UTSW |
2 |
61,483,876 (GRCm39) |
missense |
probably benign |
0.05 |
|
| Predicted Primers |
PCR Primer
(F):5'- GTGCCAGGACCGATTTAATATG -3'
(R):5'- AAAGCCTCAACTCTGGATAGTC -3'
Sequencing Primer
(F):5'- CCAGGACCGATTTAATATGGAAGTC -3'
(R):5'- TGGATGCCTGATAACTTAAAA -3'
|
| Posted On |
2016-10-24 |
Incidental Mutation