Mutagenetix > Incidental Mutation

Incidental Mutation 'R5597:Vmn2r-ps158'

437875

Institutional Source

Beutler Lab

Gene Symbol

Vmn2r-ps158

Ensembl Gene

ENSMUSG00000091528

Gene Name

vomeronasal 2, receptor, pseudogene 158

Synonyms

Vmn2r126, Gm9268

MMRRC Submission

043149-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.093) question?

Stock #

R5597 (G1)

Quality Score

223

Status

Validated

Chromosome

Chromosomal Location

42668222-42697530 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 42674073 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 377 (D377G)

Ref Sequence

ENSEMBL: ENSMUSP00000134441 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000166914] [ENSMUST00000173815]

AlphaFold

E9Q0M3

Predicted Effect

probably benign
Transcript: ENSMUST00000166914
AA Change: D384G

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)

SMART Domains

Protein: ENSMUSP00000129068
Gene: ENSMUSG00000091528
AA Change: D384G

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
Pfam:ANF_receptor	77	473	1.1e-41	PFAM
Pfam:NCD3G	516	569	1.7e-23	PFAM
Pfam:7tm_3	602	837	9.6e-51	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000173815
AA Change: D377G

PolyPhen 2 Score 0.014 (Sensitivity: 0.96; Specificity: 0.79)

SMART Domains

Protein: ENSMUSP00000134441
Gene: ENSMUSG00000091528
AA Change: D377G

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
Pfam:ANF_receptor	77	467	5.3e-40	PFAM
Pfam:NCD3G	509	562	4.6e-22	PFAM
Pfam:7tm_3	594	831	1.1e-73	PFAM

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.6%
20x: 96.2%

Validation Efficiency

100% (55/55)

Allele List at MGI

Other mutations in this stock

Total: 50 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca8a	G	A	11: 109,927,363 (GRCm39)	T1330I	probably damaging	Het
Aebp1	T	C	11: 5,816,487 (GRCm39)	V322A	probably benign	Het
Anks3	T	A	16: 4,771,793 (GRCm39)	H77L	possibly damaging	Het
Bsn	A	T	9: 107,992,131 (GRCm39)	M1207K	probably benign	Het
Btla	A	G	16: 45,064,599 (GRCm39)	T183A	probably benign	Het
Cdca8	G	A	4: 124,812,793 (GRCm39)	R286W	probably damaging	Het
Cnot6l	T	C	5: 96,278,978 (GRCm39)	D80G	probably damaging	Het
Col16a1	A	G	4: 129,952,097 (GRCm39)	D93G	probably damaging	Het
Ctsk	T	C	3: 95,409,007 (GRCm39)	V130A	probably damaging	Het
Cul9	T	C	17: 46,813,591 (GRCm39)	E2294G	possibly damaging	Het
Dcaf5	G	T	12: 80,386,817 (GRCm39)	S436R	probably damaging	Het
Dnah7a	A	T	1: 53,573,611 (GRCm39)	L1792H	probably benign	Het
Dst	T	C	1: 34,231,794 (GRCm39)	V3307A	probably benign	Het
Frrs1	C	T	3: 116,671,887 (GRCm39)		probably benign	Het
Gimap4	T	C	6: 48,667,698 (GRCm39)	L151P	probably damaging	Het
Hook2	A	G	8: 85,720,657 (GRCm39)	N166S	probably benign	Het
Hp1bp3	A	T	4: 137,948,939 (GRCm39)	M1L	possibly damaging	Het
Igkv4-56	T	A	6: 69,564,467 (GRCm39)		noncoding transcript	Het
Kdm6b	C	T	11: 69,296,900 (GRCm39)	A456T	probably damaging	Het
Lamc1	A	G	1: 153,127,716 (GRCm39)	C396R	probably damaging	Het
Lars2	A	T	9: 123,284,047 (GRCm39)	D745V	probably damaging	Het
Macf1	A	T	4: 123,433,570 (GRCm39)		probably benign	Het
Mapk4	T	A	18: 74,070,341 (GRCm39)	Y184F	probably benign	Het
Mgat5	A	G	1: 127,325,303 (GRCm39)	Y390C	probably damaging	Het
Msh2	T	C	17: 88,030,789 (GRCm39)	S889P	probably benign	Het
Nebl	A	G	2: 17,382,978 (GRCm39)	S100P	probably benign	Het
Nudt7	A	T	8: 114,878,506 (GRCm39)	H154L	probably benign	Het
Olig2	A	T	16: 91,023,768 (GRCm39)	M161L	probably benign	Het
Or2ah1	T	C	2: 85,653,804 (GRCm39)	L163P	probably damaging	Het
Or5h24	A	T	16: 58,918,710 (GRCm39)	V215D	unknown	Het
Or6c214	T	C	10: 129,590,755 (GRCm39)	D188G	probably damaging	Het
Palmd	T	A	3: 116,717,225 (GRCm39)	D424V	probably damaging	Het
Pdzk1ip1	A	G	4: 114,950,689 (GRCm39)	N164D	probably damaging	Het
Prkag1	A	G	15: 98,713,789 (GRCm39)	S14P	probably damaging	Het
Prss12	C	T	3: 123,258,389 (GRCm39)	P161L	probably benign	Het
Pwwp2a	T	C	11: 43,573,422 (GRCm39)	V168A	probably benign	Het
Rassf7	A	G	7: 140,797,024 (GRCm39)	D79G	probably damaging	Het
Rgs3	A	T	4: 62,542,082 (GRCm39)	I19F	probably damaging	Het
Slc30a10	C	A	1: 185,194,897 (GRCm39)	H236Q	probably damaging	Het
Slco3a1	C	A	7: 73,934,210 (GRCm39)	R654L	probably benign	Het
Smad4	A	C	18: 73,795,898 (GRCm39)	F165L	probably benign	Het
Swsap1	G	T	9: 21,867,242 (GRCm39)	R62M	probably damaging	Het
Tenm4	T	A	7: 96,202,724 (GRCm39)	M113K	probably benign	Het
Tmem225	A	G	9: 40,060,726 (GRCm39)	N95S	possibly damaging	Het
Tnni3k	A	T	3: 154,577,765 (GRCm39)	L658H	probably damaging	Het
Trem2	G	A	17: 48,658,840 (GRCm39)	V202I	probably benign	Het
Tyw1	C	T	5: 130,303,498 (GRCm39)	L289F	probably benign	Het
Vcam1	T	A	3: 115,919,651 (GRCm39)	D205V	probably damaging	Het
Yy1	A	G	12: 108,781,436 (GRCm39)	D367G	probably damaging	Het
Zfp11	A	T	5: 129,734,166 (GRCm39)	C432S	probably benign	Het

Other mutations in Vmn2r-ps158

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01676:Vmn2r-ps158	APN	7	42,674,133 (GRCm39)	missense	probably damaging	0.97
IGL01753:Vmn2r-ps158	APN	7	42,674,139 (GRCm39)	missense	probably damaging	1.00
IGL02338:Vmn2r-ps158	APN	7	42,697,160 (GRCm39)	missense	probably damaging	1.00
IGL02541:Vmn2r-ps158	APN	7	42,673,092 (GRCm39)	splice site	probably benign
R0751:Vmn2r-ps158	UTSW	7	42,696,833 (GRCm39)	missense	probably damaging	0.99
R0849:Vmn2r-ps158	UTSW	7	42,674,142 (GRCm39)	missense	probably damaging	1.00
R1460:Vmn2r-ps158	UTSW	7	42,672,639 (GRCm39)	missense	probably benign	0.25
R1617:Vmn2r-ps158	UTSW	7	42,673,503 (GRCm39)	missense	probably benign	0.18
R1962:Vmn2r-ps158	UTSW	7	42,696,824 (GRCm39)	missense	probably benign	0.00
R1999:Vmn2r-ps158	UTSW	7	42,696,883 (GRCm39)	missense	probably damaging	1.00
R2022:Vmn2r-ps158	UTSW	7	42,673,454 (GRCm39)	missense	probably benign
R2434:Vmn2r-ps158	UTSW	7	42,696,881 (GRCm39)	missense	probably damaging	0.99
R3760:Vmn2r-ps158	UTSW	7	42,673,502 (GRCm39)	missense	probably benign	0.00
R4562:Vmn2r-ps158	UTSW	7	42,672,986 (GRCm39)	nonsense	probably null
R4890:Vmn2r-ps158	UTSW	7	42,697,024 (GRCm39)	missense	probably damaging	1.00
R5221:Vmn2r-ps158	UTSW	7	42,672,684 (GRCm39)	missense	probably benign	0.31
R6589:Vmn2r-ps158	UTSW	7	42,673,022 (GRCm39)	missense	possibly damaging	0.91
R6831:Vmn2r-ps158	UTSW	7	42,673,004 (GRCm39)	missense	probably damaging	1.00
R6834:Vmn2r-ps158	UTSW	7	42,673,004 (GRCm39)	missense	probably damaging	1.00
R6910:Vmn2r-ps158	UTSW	7	42,673,475 (GRCm39)	missense	probably benign	0.01
R6944:Vmn2r-ps158	UTSW	7	42,697,393 (GRCm39)	missense	possibly damaging	0.95
R7470:Vmn2r-ps158	UTSW	7	42,697,310 (GRCm39)	missense	probably damaging	1.00
R7553:Vmn2r-ps158	UTSW	7	42,697,447 (GRCm39)	missense	probably damaging	1.00
R7661:Vmn2r-ps158	UTSW	7	42,672,582 (GRCm39)	missense	probably benign	0.00
R7677:Vmn2r-ps158	UTSW	7	42,674,163 (GRCm39)	missense	probably damaging	1.00
R8087:Vmn2r-ps158	UTSW	7	42,697,094 (GRCm39)	missense	probably benign	0.04
R8210:Vmn2r-ps158	UTSW	7	42,673,462 (GRCm39)	missense	probably benign	0.16
R8379:Vmn2r-ps158	UTSW	7	42,697,270 (GRCm39)	missense	probably damaging	1.00
R8692:Vmn2r-ps158	UTSW	7	42,697,108 (GRCm39)	missense	probably benign	0.13
R8917:Vmn2r-ps158	UTSW	7	42,697,433 (GRCm39)	missense	probably damaging	1.00
R9255:Vmn2r-ps158	UTSW	7	42,673,965 (GRCm39)	missense	possibly damaging	0.75
R9375:Vmn2r-ps158	UTSW	7	42,673,499 (GRCm39)	missense	possibly damaging	0.87
R9452:Vmn2r-ps158	UTSW	7	42,697,257 (GRCm39)	missense	possibly damaging	0.88
R9647:Vmn2r-ps158	UTSW	7	42,697,171 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GGTCTTGAACTCTCAATGGGATATTG -3'
(R):5'- AGGGATATTACCTGCCAGGG -3'

Sequencing Primer
(F):5'- TGATAGAATCCTTTCATGGGAGTC -3'
(R):5'- TCATCTCATGGAGGCTGT -3'

Posted On

2016-10-26