Mutagenetix > Incidental Mutation

Incidental Mutation 'R5614:Fam43a'

438163

Institutional Source

Beutler Lab

Gene Symbol

Fam43a

Ensembl Gene

ENSMUSG00000046546

Gene Name

family with sequence similarity 43, member A

Synonyms

MMRRC Submission

043275-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.156) question?

Stock #

R5614 (G1)

Quality Score

179

Status

Validated

Chromosome

Chromosomal Location

30418541-30421615 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 30420490 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Threonine at position 358 (I358T)

Ref Sequence

ENSEMBL: ENSMUSP00000056555 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000059078]

AlphaFold

Q8BUP8

Predicted Effect

possibly damaging
Transcript: ENSMUST00000059078
AA Change: I358T

PolyPhen 2 Score 0.948 (Sensitivity: 0.79; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000056555
Gene: ENSMUSG00000046546
AA Change: I358T

Domain	Start	End	E-Value	Type
Pfam:PID_2	69	256	3e-79	PFAM
low complexity region	329	345	N/A	INTRINSIC
low complexity region	382	399	N/A	INTRINSIC

Meta Mutation Damage Score

0.1407

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.6%
20x: 96.2%

Validation Efficiency

100% (62/62)

Allele List at MGI

Other mutations in this stock

Total: 50 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca1	A	G	4: 53,046,132 (GRCm39)	V1712A	probably damaging	Het
Ankmy2	T	C	12: 36,243,783 (GRCm39)	S333P	probably damaging	Het
Arfrp1	A	G	2: 181,001,236 (GRCm39)		probably benign	Het
Atp13a2	A	G	4: 140,719,493 (GRCm39)	T21A	probably benign	Het
Bud23	C	A	5: 135,087,966 (GRCm39)	A152S	probably benign	Het
Cant1	T	C	11: 118,299,569 (GRCm39)	D260G	probably benign	Het
Ces1b	T	C	8: 93,794,836 (GRCm39)	I254M	probably benign	Het
Ces1d	T	C	8: 93,902,832 (GRCm39)	T375A	probably benign	Het
Cfap54	A	G	10: 92,880,911 (GRCm39)	L384P	probably damaging	Het
Chrne	C	T	11: 70,505,879 (GRCm39)	V469I	possibly damaging	Het
Clspn	A	G	4: 126,474,755 (GRCm39)	E968G	probably damaging	Het
Col5a3	A	G	9: 20,694,772 (GRCm39)		probably benign	Het
Dtx4	T	C	19: 12,459,547 (GRCm39)	Y419C	probably damaging	Het
Fam171b	T	A	2: 83,643,217 (GRCm39)	I42N	probably damaging	Het
Fasn	T	C	11: 120,704,154 (GRCm39)	S1422G	probably benign	Het
Fig4	A	T	10: 41,148,981 (GRCm39)	V157E	probably damaging	Het
Fus	T	C	7: 127,573,543 (GRCm39)		probably benign	Het
Hmcn2	G	T	2: 31,318,315 (GRCm39)	V3887F	probably damaging	Het
Hmgcll1	A	G	9: 75,988,675 (GRCm39)	Y182C	probably damaging	Het
Hook2	T	A	8: 85,729,137 (GRCm39)	I585N	probably damaging	Het
Iars2	T	C	1: 185,021,705 (GRCm39)	T866A	probably benign	Het
Iqca1l	G	A	5: 24,755,140 (GRCm39)	A330V	probably benign	Het
Lrit1	T	A	14: 36,783,911 (GRCm39)	M413K	probably benign	Het
Myl9	G	A	2: 156,623,083 (GRCm39)		probably benign	Het
Nelfa	A	T	5: 34,077,844 (GRCm39)	L179Q	probably damaging	Het
Nod2	A	T	8: 89,390,824 (GRCm39)	D355V	probably damaging	Het
Npbwr1	A	T	1: 5,987,030 (GRCm39)	S161R	probably damaging	Het
Nxpe2	A	T	9: 48,234,401 (GRCm39)	F289I	probably benign	Het
Odf2	A	G	2: 29,810,879 (GRCm39)	I538M	probably damaging	Het
Osbpl6	T	A	2: 76,398,453 (GRCm39)	V379E	probably damaging	Het
Pkhd1	A	G	1: 20,143,750 (GRCm39)	C3859R	possibly damaging	Het
Rgs1	G	T	1: 144,121,995 (GRCm39)	T99N	probably benign	Het
Rnf6	T	C	5: 146,154,910 (GRCm39)		probably null	Het
Rtp1	C	A	16: 23,249,940 (GRCm39)	Q102K	possibly damaging	Het
Sec24c	T	A	14: 20,732,806 (GRCm39)	V123E	possibly damaging	Het
Serpini2	T	C	3: 75,165,014 (GRCm39)		probably benign	Het
Stxbp5	A	T	10: 9,636,638 (GRCm39)		probably benign	Het
Tecta	A	G	9: 42,250,351 (GRCm39)	S1809P	probably damaging	Het
Tgfb2	T	A	1: 186,357,710 (GRCm39)	I394F	probably benign	Het
Thg1l	T	C	11: 45,841,054 (GRCm39)	Y175C	possibly damaging	Het
Tmem67	C	A	4: 12,061,755 (GRCm39)	K572N	possibly damaging	Het
Tollip	T	C	7: 141,445,825 (GRCm39)	T19A	probably damaging	Het
Ttn	A	G	2: 76,542,451 (GRCm39)	Y25185H	probably damaging	Het
Vgll2	A	T	10: 51,901,318 (GRCm39)	R83*	probably null	Het
Wfdc8	G	T	2: 164,445,123 (GRCm39)	A164E	probably damaging	Het
Ylpm1	T	C	12: 85,111,718 (GRCm39)		probably benign	Het
Zfp326	T	A	5: 106,036,361 (GRCm39)	S91T	probably damaging	Het
Zfp638	T	C	6: 83,906,623 (GRCm39)	F263L	probably damaging	Het
Zfp800	G	A	6: 28,243,135 (GRCm39)	T610I	probably damaging	Het
Zmym4	A	G	4: 126,804,729 (GRCm39)	F475L	possibly damaging	Het

Other mutations in Fam43a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01994:Fam43a	APN	16	30,419,481 (GRCm39)	missense	probably damaging	0.97
IGL02525:Fam43a	APN	16	30,419,596 (GRCm39)	missense	probably benign	0.09
IGL02970:Fam43a	APN	16	30,419,922 (GRCm39)	missense	probably damaging	1.00
IGL03027:Fam43a	APN	16	30,419,922 (GRCm39)	missense	probably damaging	1.00
R0512:Fam43a	UTSW	16	30,420,553 (GRCm39)	missense	possibly damaging	0.94
R2996:Fam43a	UTSW	16	30,419,838 (GRCm39)	missense	possibly damaging	0.81
R3747:Fam43a	UTSW	16	30,420,664 (GRCm39)	missense	probably benign	0.05
R5867:Fam43a	UTSW	16	30,420,277 (GRCm39)	missense	probably benign
R8052:Fam43a	UTSW	16	30,420,622 (GRCm39)	missense	probably benign	0.02
R8199:Fam43a	UTSW	16	30,419,586 (GRCm39)	nonsense	probably null
R8282:Fam43a	UTSW	16	30,420,106 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ACGGACCTTGCTGCTACAAG -3'
(R):5'- ATCTAGGCTGGTGCTGTCAG -3'

Sequencing Primer
(F):5'- ATCACCGAGGACCTGCTTG -3'
(R):5'- TGTCAGCAGGGCCCGATG -3'

Posted On

2016-10-26