Incidental Mutation 'IGL00493:Sel1l'
ID |
4382 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Sel1l
|
Ensembl Gene |
ENSMUSG00000020964 |
Gene Name |
sel-1 suppressor of lin-12-like (C. elegans) |
Synonyms |
Sel1h |
Accession Numbers |
|
Essential gene? |
Essential
(E-score: 1.000)
|
Stock # |
IGL00493
|
Quality Score |
|
Status
|
|
Chromosome |
12 |
Chromosomal Location |
91772817-91815931 bp(-) (GRCm39) |
Type of Mutation |
splice site |
DNA Base Change (assembly) |
A to G
at 91781387 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
|
Ref Sequence |
ENSEMBL: ENSMUSP00000136087
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000021347]
[ENSMUST00000167466]
[ENSMUST00000178462]
|
AlphaFold |
Q9Z2G6 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000021347
|
SMART Domains |
Protein: ENSMUSP00000021347 Gene: ENSMUSG00000020964
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
22 |
N/A |
INTRINSIC |
FN2
|
116 |
164 |
1.24e-24 |
SMART |
SEL1
|
179 |
214 |
2.48e-1 |
SMART |
SEL1
|
215 |
250 |
7.5e1 |
SMART |
SEL1
|
251 |
286 |
1.86e-5 |
SMART |
SEL1
|
287 |
322 |
1.16e-1 |
SMART |
SEL1
|
369 |
405 |
7.93e-9 |
SMART |
SEL1
|
406 |
442 |
8.05e-10 |
SMART |
SEL1
|
443 |
478 |
2.48e-10 |
SMART |
SEL1
|
479 |
514 |
1.91e-11 |
SMART |
SEL1
|
515 |
550 |
9.04e-4 |
SMART |
Pfam:Sel1
|
585 |
622 |
3.4e-1 |
PFAM |
SEL1
|
623 |
658 |
4.42e-7 |
SMART |
SEL1
|
660 |
695 |
2.28e-9 |
SMART |
low complexity region
|
766 |
790 |
N/A |
INTRINSIC |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000165282
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000166691
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000167466
|
SMART Domains |
Protein: ENSMUSP00000129384 Gene: ENSMUSG00000020964
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
22 |
N/A |
INTRINSIC |
SEL1
|
129 |
164 |
2.48e-1 |
SMART |
SEL1
|
165 |
200 |
7.5e1 |
SMART |
SEL1
|
201 |
236 |
1.86e-5 |
SMART |
SEL1
|
237 |
272 |
1.16e-1 |
SMART |
SEL1
|
319 |
355 |
7.93e-9 |
SMART |
SEL1
|
356 |
392 |
8.05e-10 |
SMART |
SEL1
|
393 |
428 |
2.48e-10 |
SMART |
SEL1
|
429 |
464 |
1.91e-11 |
SMART |
SEL1
|
465 |
500 |
9.04e-4 |
SMART |
Pfam:Sel1
|
534 |
572 |
1.5e-1 |
PFAM |
SEL1
|
573 |
608 |
4.42e-7 |
SMART |
SEL1
|
610 |
645 |
2.28e-9 |
SMART |
low complexity region
|
716 |
740 |
N/A |
INTRINSIC |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000171465
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000178462
|
SMART Domains |
Protein: ENSMUSP00000136087 Gene: ENSMUSG00000020964
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
22 |
N/A |
INTRINSIC |
SEL1
|
129 |
164 |
2.48e-1 |
SMART |
SEL1
|
165 |
200 |
7.5e1 |
SMART |
SEL1
|
201 |
236 |
1.86e-5 |
SMART |
SEL1
|
237 |
272 |
1.16e-1 |
SMART |
SEL1
|
319 |
355 |
7.93e-9 |
SMART |
SEL1
|
356 |
392 |
8.05e-10 |
SMART |
SEL1
|
393 |
428 |
2.48e-10 |
SMART |
SEL1
|
429 |
464 |
1.91e-11 |
SMART |
SEL1
|
465 |
500 |
9.04e-4 |
SMART |
Pfam:Sel1
|
535 |
572 |
3.2e-1 |
PFAM |
SEL1
|
573 |
608 |
4.42e-7 |
SMART |
SEL1
|
610 |
645 |
2.28e-9 |
SMART |
low complexity region
|
716 |
740 |
N/A |
INTRINSIC |
|
Coding Region Coverage |
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is part of a protein complex required for the retrotranslocation or dislocation of misfolded proteins from the endoplasmic reticulum lumen to the cytosol, where they are degraded by the proteasome in a ubiquitin-dependent manner. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2011] PHENOTYPE: Mice homozygous for a gene trapped allele exhibit prenatal lethality with impaired exocrine and endocrine pancreatic development. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 39 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Adarb2 |
A |
G |
13: 8,751,761 (GRCm39) |
T509A |
probably benign |
Het |
Arhgap23 |
T |
C |
11: 97,337,379 (GRCm39) |
|
probably null |
Het |
Astn1 |
A |
T |
1: 158,427,889 (GRCm39) |
I687F |
possibly damaging |
Het |
Atg4d |
T |
C |
9: 21,178,217 (GRCm39) |
F112L |
probably damaging |
Het |
Bltp3b |
A |
C |
10: 89,615,846 (GRCm39) |
D163A |
probably damaging |
Het |
Cd200 |
T |
A |
16: 45,217,409 (GRCm39) |
D94V |
probably damaging |
Het |
Cfap46 |
T |
C |
7: 139,194,359 (GRCm39) |
K2285R |
probably benign |
Het |
Clhc1 |
T |
A |
11: 29,521,745 (GRCm39) |
I426N |
probably damaging |
Het |
Cnnm2 |
T |
A |
19: 46,751,659 (GRCm39) |
V483E |
probably damaging |
Het |
Dennd2b |
G |
A |
7: 109,126,915 (GRCm39) |
A932V |
possibly damaging |
Het |
Dlc1 |
A |
T |
8: 37,037,436 (GRCm39) |
|
probably benign |
Het |
Fpgs |
T |
C |
2: 32,578,009 (GRCm39) |
I138V |
possibly damaging |
Het |
Gpr152 |
T |
C |
19: 4,193,506 (GRCm39) |
V349A |
probably benign |
Het |
Hk1 |
C |
A |
10: 62,122,127 (GRCm39) |
E523* |
probably null |
Het |
Ift70a1 |
C |
A |
2: 75,812,085 (GRCm39) |
|
probably benign |
Het |
Krt6a |
T |
G |
15: 101,601,229 (GRCm39) |
K241N |
probably damaging |
Het |
Mcm3ap |
A |
G |
10: 76,307,011 (GRCm39) |
S375G |
probably benign |
Het |
Meikin |
C |
T |
11: 54,289,320 (GRCm39) |
P231L |
probably damaging |
Het |
Micall1 |
G |
A |
15: 78,999,221 (GRCm39) |
|
probably benign |
Het |
Mvk |
G |
A |
5: 114,583,502 (GRCm39) |
V14I |
probably benign |
Het |
Myo6 |
C |
T |
9: 80,199,754 (GRCm39) |
S1021L |
probably damaging |
Het |
N4bp2l2 |
G |
A |
5: 150,585,401 (GRCm39) |
T193M |
probably benign |
Het |
Naip5 |
G |
T |
13: 100,367,279 (GRCm39) |
D272E |
probably damaging |
Het |
Nptn |
T |
A |
9: 58,550,922 (GRCm39) |
N316K |
probably damaging |
Het |
Pde6c |
T |
C |
19: 38,151,324 (GRCm39) |
|
probably benign |
Het |
Prg4 |
T |
A |
1: 150,327,671 (GRCm39) |
I850L |
probably damaging |
Het |
Rdm1 |
T |
G |
11: 101,526,580 (GRCm39) |
C251G |
possibly damaging |
Het |
Relch |
A |
G |
1: 105,624,324 (GRCm39) |
|
probably benign |
Het |
Rps6kl1 |
G |
A |
12: 85,186,157 (GRCm39) |
P291L |
probably benign |
Het |
Serpinb1b |
T |
C |
13: 33,277,850 (GRCm39) |
F361S |
probably damaging |
Het |
Sirpb1a |
G |
A |
3: 15,475,788 (GRCm39) |
|
probably benign |
Het |
Smpd1 |
T |
G |
7: 105,205,848 (GRCm39) |
V405G |
probably damaging |
Het |
Spmip11 |
T |
C |
15: 98,486,425 (GRCm39) |
|
probably benign |
Het |
Tead3 |
T |
C |
17: 28,551,780 (GRCm39) |
T438A |
possibly damaging |
Het |
Treh |
A |
T |
9: 44,595,197 (GRCm39) |
D89V |
probably damaging |
Het |
Trim10 |
A |
T |
17: 37,188,140 (GRCm39) |
H452L |
probably benign |
Het |
Ugt2b1 |
A |
G |
5: 87,073,817 (GRCm39) |
C181R |
probably benign |
Het |
Xdh |
A |
T |
17: 74,230,101 (GRCm39) |
F277I |
possibly damaging |
Het |
Zswim4 |
T |
G |
8: 84,938,769 (GRCm39) |
T1038P |
probably damaging |
Het |
|
Other mutations in Sel1l |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01082:Sel1l
|
APN |
12 |
91,778,682 (GRCm39) |
missense |
probably benign |
0.41 |
IGL01402:Sel1l
|
APN |
12 |
91,808,607 (GRCm39) |
missense |
possibly damaging |
0.55 |
IGL01610:Sel1l
|
APN |
12 |
91,784,064 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01690:Sel1l
|
APN |
12 |
91,810,033 (GRCm39) |
missense |
probably benign |
|
IGL01803:Sel1l
|
APN |
12 |
91,797,504 (GRCm39) |
missense |
probably benign |
0.37 |
IGL01939:Sel1l
|
APN |
12 |
91,783,021 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02275:Sel1l
|
APN |
12 |
91,781,789 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02279:Sel1l
|
APN |
12 |
91,781,771 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02407:Sel1l
|
APN |
12 |
91,810,042 (GRCm39) |
splice site |
probably benign |
|
IGL02934:Sel1l
|
APN |
12 |
91,776,710 (GRCm39) |
nonsense |
probably null |
|
R0533:Sel1l
|
UTSW |
12 |
91,786,868 (GRCm39) |
missense |
probably damaging |
1.00 |
R0565:Sel1l
|
UTSW |
12 |
91,780,719 (GRCm39) |
missense |
possibly damaging |
0.95 |
R0565:Sel1l
|
UTSW |
12 |
91,778,663 (GRCm39) |
missense |
probably benign |
0.16 |
R0973:Sel1l
|
UTSW |
12 |
91,791,634 (GRCm39) |
missense |
probably damaging |
1.00 |
R1378:Sel1l
|
UTSW |
12 |
91,799,871 (GRCm39) |
splice site |
probably null |
|
R1505:Sel1l
|
UTSW |
12 |
91,780,736 (GRCm39) |
missense |
probably damaging |
1.00 |
R1530:Sel1l
|
UTSW |
12 |
91,793,458 (GRCm39) |
missense |
probably damaging |
0.96 |
R2001:Sel1l
|
UTSW |
12 |
91,793,324 (GRCm39) |
nonsense |
probably null |
|
R3418:Sel1l
|
UTSW |
12 |
91,776,776 (GRCm39) |
missense |
probably damaging |
1.00 |
R3419:Sel1l
|
UTSW |
12 |
91,776,776 (GRCm39) |
missense |
probably damaging |
1.00 |
R4601:Sel1l
|
UTSW |
12 |
91,799,827 (GRCm39) |
critical splice donor site |
probably null |
|
R4776:Sel1l
|
UTSW |
12 |
91,780,667 (GRCm39) |
missense |
probably damaging |
1.00 |
R4839:Sel1l
|
UTSW |
12 |
91,799,932 (GRCm39) |
missense |
probably benign |
0.00 |
R4860:Sel1l
|
UTSW |
12 |
91,798,376 (GRCm39) |
missense |
probably damaging |
1.00 |
R4860:Sel1l
|
UTSW |
12 |
91,798,376 (GRCm39) |
missense |
probably damaging |
1.00 |
R4869:Sel1l
|
UTSW |
12 |
91,780,828 (GRCm39) |
intron |
probably benign |
|
R5261:Sel1l
|
UTSW |
12 |
91,791,658 (GRCm39) |
missense |
possibly damaging |
0.92 |
R5692:Sel1l
|
UTSW |
12 |
91,778,652 (GRCm39) |
missense |
probably benign |
0.02 |
R5744:Sel1l
|
UTSW |
12 |
91,776,754 (GRCm39) |
missense |
possibly damaging |
0.95 |
R5830:Sel1l
|
UTSW |
12 |
91,799,945 (GRCm39) |
missense |
probably damaging |
1.00 |
R6799:Sel1l
|
UTSW |
12 |
91,781,742 (GRCm39) |
splice site |
probably null |
|
R7291:Sel1l
|
UTSW |
12 |
91,815,739 (GRCm39) |
missense |
probably benign |
|
R8493:Sel1l
|
UTSW |
12 |
91,780,735 (GRCm39) |
nonsense |
probably null |
|
R9178:Sel1l
|
UTSW |
12 |
91,797,526 (GRCm39) |
missense |
probably benign |
0.05 |
R9179:Sel1l
|
UTSW |
12 |
91,778,726 (GRCm39) |
missense |
probably benign |
0.42 |
Z1176:Sel1l
|
UTSW |
12 |
91,792,071 (GRCm39) |
missense |
probably null |
1.00 |
|
Posted On |
2012-04-20 |