Mutagenetix > Incidental Mutation

Incidental Mutation 'R0496:Swt1'

43900

Institutional Source

Beutler Lab

Gene Symbol

Swt1

Ensembl Gene

ENSMUSG00000052748

Gene Name

SWT1 RNA endoribonuclease homolog (S. cerevisiae)

Synonyms

1200016B10Rik

MMRRC Submission

038692-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.180) question?

Stock #

R0496 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

151243450-151304206 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 151287021 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Leucine at position 157 (H157L)

Ref Sequence

ENSEMBL: ENSMUSP00000107514 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000064771] [ENSMUST00000111883]

AlphaFold

Q9DBQ9

Predicted Effect

probably benign
Transcript: ENSMUST00000064771
AA Change: H157L

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000067516
Gene: ENSMUSG00000052748
AA Change: H157L

Domain	Start	End	E-Value	Type
low complexity region	186	206	N/A	INTRINSIC
low complexity region	231	242	N/A	INTRINSIC
low complexity region	258	269	N/A	INTRINSIC
PINc	395	522	1.94e-9	SMART
low complexity region	783	793	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000111883
AA Change: H157L

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000107514
Gene: ENSMUSG00000052748
AA Change: H157L

Domain	Start	End	E-Value	Type
low complexity region	186	206	N/A	INTRINSIC
low complexity region	231	242	N/A	INTRINSIC
low complexity region	258	269	N/A	INTRINSIC
PINc	395	522	1.94e-9	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000129939

SMART Domains

Protein: ENSMUSP00000120483
Gene: ENSMUSG00000052748

Domain	Start	End	E-Value	Type
PINc	146	245	6.78e-1	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000138095

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.3%
20x: 92.6%

Validation Efficiency

98% (99/101)

Allele List at MGI

Other mutations in this stock

Total: 97 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110002E22Rik	A	G	3: 137,774,005 (GRCm39)	K1065E	probably damaging	Het
4933402N03Rik	T	C	7: 130,747,860 (GRCm39)	N44S	probably benign	Het
Abca13	A	G	11: 9,241,701 (GRCm39)	D1188G	probably benign	Het
Abcb11	C	T	2: 69,108,228 (GRCm39)		probably benign	Het
Abcc8	A	T	7: 45,758,244 (GRCm39)	I1274N	probably damaging	Het
Adamtsl1	G	A	4: 86,259,435 (GRCm39)	C827Y	probably damaging	Het
Agap3	T	A	5: 24,706,241 (GRCm39)	V369E	probably damaging	Het
Ankrd13b	G	A	11: 77,363,867 (GRCm39)	R195C	probably damaging	Het
Ap3b1	A	G	13: 94,609,446 (GRCm39)		probably benign	Het
Arhgef40	A	T	14: 52,242,364 (GRCm39)		probably benign	Het
Atad5	A	G	11: 79,991,182 (GRCm39)	I692V	probably benign	Het
Atp5f1b	G	T	10: 127,922,043 (GRCm39)	R310L	possibly damaging	Het
AY358078	A	T	14: 52,040,989 (GRCm39)	M103L	unknown	Het
Bcl9l	T	G	9: 44,420,815 (GRCm39)	V1370G	probably benign	Het
Bglap3	T	A	3: 88,276,444 (GRCm39)	Q38L	probably damaging	Het
Bltp1	A	G	3: 37,041,784 (GRCm39)	T2721A	probably damaging	Het
Ccn2	G	T	10: 24,473,413 (GRCm39)	M317I	possibly damaging	Het
Cd38	T	C	5: 44,026,233 (GRCm39)	F6L	probably damaging	Het
Cela3a	A	C	4: 137,131,779 (GRCm39)	V138G	probably damaging	Het
Cemip2	A	T	19: 21,774,709 (GRCm39)	N117I	possibly damaging	Het
Clvs1	T	A	4: 9,424,241 (GRCm39)	I229N	probably damaging	Het
Cpne1	G	A	2: 155,921,339 (GRCm39)	H16Y	probably damaging	Het
Ctc1	T	C	11: 68,926,333 (GRCm39)	L1069P	probably damaging	Het
Dgkd	G	A	1: 87,864,622 (GRCm39)	S996N	probably null	Het
Dnah9	A	T	11: 65,965,961 (GRCm39)	M1685K	probably null	Het
Dnajb12	C	T	10: 59,715,623 (GRCm39)	R42*	probably null	Het
Dock5	T	C	14: 68,054,967 (GRCm39)	Q633R	probably damaging	Het
Dync2h1	A	G	9: 7,155,180 (GRCm39)	M868T	probably benign	Het
Enpp1	G	T	10: 24,547,950 (GRCm39)	H208Q	probably benign	Het
Epha7	T	A	4: 28,821,292 (GRCm39)	D152E	probably damaging	Het
Fancd2	T	C	6: 113,532,091 (GRCm39)		probably benign	Het
Gart	G	A	16: 91,419,925 (GRCm39)		probably benign	Het
Gm10964	A	T	3: 103,646,745 (GRCm39)		probably null	Het
Gpbar1	T	C	1: 74,318,140 (GRCm39)	F128L	probably benign	Het
Gsx2	T	A	5: 75,237,726 (GRCm39)	M226K	probably benign	Het
Gucd1	T	C	10: 75,347,100 (GRCm39)	D50G	possibly damaging	Het
Has1	A	G	17: 18,064,008 (GRCm39)	Y544H	probably benign	Het
Hc	A	T	2: 34,903,583 (GRCm39)	Y1024N	probably damaging	Het
Hoxa13	CCG	CCGCG	6: 52,237,618 (GRCm39)		probably null	Het
Ift122	T	A	6: 115,882,863 (GRCm39)	H659Q	probably benign	Het
Itga2	T	C	13: 114,990,435 (GRCm39)	Q902R	probably benign	Het
Itgb2l	T	C	16: 96,235,901 (GRCm39)	K181E	possibly damaging	Het
Jak3	A	T	8: 72,135,041 (GRCm39)	H558L	probably damaging	Het
Kcnh8	A	G	17: 53,032,886 (GRCm39)	T58A	probably benign	Het
Klhl6	GT	G	16: 19,775,716 (GRCm39)	279	probably null	Het
Krt33a	C	T	11: 99,903,155 (GRCm39)		probably benign	Het
Magi2	A	T	5: 20,866,357 (GRCm39)		probably benign	Het
Map4	G	A	9: 109,868,918 (GRCm39)		probably benign	Het
Map4k4	T	A	1: 40,045,982 (GRCm39)	S754T	probably damaging	Het
Mapk8ip3	A	G	17: 25,133,424 (GRCm39)		probably benign	Het
Mib1	A	G	18: 10,804,773 (GRCm39)	S918G	probably benign	Het
Mipol1	T	A	12: 57,503,963 (GRCm39)	V377D	probably damaging	Het
Mlh1	T	C	9: 111,070,624 (GRCm39)	T364A	probably benign	Het
Mta1	C	T	12: 113,094,941 (GRCm39)	Q400*	probably null	Het
Mthfd1l	C	G	10: 4,040,006 (GRCm39)	R806G	probably benign	Het
Myh13	C	A	11: 67,239,641 (GRCm39)	N730K	probably damaging	Het
Myom1	A	G	17: 71,391,301 (GRCm39)	K937E	probably damaging	Het
Naxd	T	C	8: 11,560,224 (GRCm39)		probably benign	Het
Negr1	G	T	3: 156,721,904 (GRCm39)	K159N	probably damaging	Het
Nwd2	G	T	5: 63,963,686 (GRCm39)	W1090L	probably damaging	Het
Or1e1f	T	C	11: 73,855,706 (GRCm39)	S91P	probably benign	Het
Or2j3	A	G	17: 38,615,549 (GRCm39)	S268P	probably damaging	Het
Or51v14	C	T	7: 103,261,204 (GRCm39)	A119T	probably benign	Het
Or52r1c	T	C	7: 102,734,797 (GRCm39)	I19T	probably damaging	Het
Or5d41	A	T	2: 88,054,499 (GRCm39)	Y292*	probably null	Het
Pcsk6	G	A	7: 65,576,997 (GRCm39)	S58N	probably benign	Het
Pdzrn3	G	A	6: 101,127,531 (GRCm39)	T1045I	possibly damaging	Het
Pitrm1	T	C	13: 6,618,750 (GRCm39)	L641P	probably damaging	Het
Pkd1l1	G	T	11: 8,879,430 (GRCm39)	H474N	probably damaging	Het
Pltp	A	G	2: 164,694,381 (GRCm39)		probably benign	Het
Qtrt1	C	T	9: 21,330,844 (GRCm39)	T324M	probably benign	Het
Racgap1	A	T	15: 99,537,713 (GRCm39)		probably benign	Het
Rhbg	A	G	3: 88,161,805 (GRCm39)	V50A	probably benign	Het
Rnf135	G	A	11: 80,074,776 (GRCm39)	V12M	probably damaging	Het
Rnf7l	G	T	10: 63,257,381 (GRCm39)	C46*	probably null	Het
Rufy2	T	C	10: 62,828,949 (GRCm39)	V117A	probably damaging	Het
Safb	A	G	17: 56,912,630 (GRCm39)	M866V	probably benign	Het
Slc35c2	G	T	2: 165,122,735 (GRCm39)	T183K	probably damaging	Het
Slc39a7	A	G	17: 34,248,512 (GRCm39)	L377P	probably damaging	Het
Slit1	G	A	19: 41,596,750 (GRCm39)		probably benign	Het
Spaca9	G	A	2: 28,583,022 (GRCm39)	H133Y	probably damaging	Het
Spout1	A	G	2: 30,064,983 (GRCm39)	F339S	probably benign	Het
St6gal2	A	G	17: 55,789,015 (GRCm39)	I16M	probably damaging	Het
Stat2	T	C	10: 128,112,378 (GRCm39)	M6T	probably benign	Het
Syne2	A	G	12: 76,085,714 (GRCm39)	N147D	possibly damaging	Het
Tmem222	A	T	4: 133,004,902 (GRCm39)	M45K	possibly damaging	Het
Tmem30a	T	A	9: 79,684,567 (GRCm39)	H95L	probably damaging	Het
Tns3	A	C	11: 8,497,262 (GRCm39)		probably benign	Het
Trpm3	A	G	19: 22,676,142 (GRCm39)	I103V	probably benign	Het
Ube2n	T	C	10: 95,377,206 (GRCm39)	F57S	probably benign	Het
Vil1	T	C	1: 74,460,499 (GRCm39)	S219P	possibly damaging	Het
Wdfy4	A	G	14: 32,862,695 (GRCm39)		probably benign	Het
Wdr7	T	C	18: 63,924,914 (GRCm39)	S966P	probably benign	Het
Wnt8a	A	G	18: 34,677,900 (GRCm39)	N103D	probably damaging	Het
Zfp523	G	A	17: 28,419,419 (GRCm39)	E186K	possibly damaging	Het
Zfp791	A	T	8: 85,836,609 (GRCm39)	D418E	probably benign	Het
Zscan20	A	G	4: 128,485,682 (GRCm39)	V192A	probably benign	Het

Other mutations in Swt1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01109:Swt1	APN	1	151,286,890 (GRCm39)	missense	probably damaging	0.99
IGL01622:Swt1	APN	1	151,286,760 (GRCm39)	missense	probably benign	0.01
IGL01623:Swt1	APN	1	151,286,760 (GRCm39)	missense	probably benign	0.01
IGL01672:Swt1	APN	1	151,270,359 (GRCm39)	critical splice donor site	probably null
IGL01693:Swt1	APN	1	151,297,855 (GRCm39)	missense	probably benign	0.02
IGL02203:Swt1	APN	1	151,246,377 (GRCm39)	missense	probably benign	0.01
IGL03223:Swt1	APN	1	151,255,170 (GRCm39)	missense	possibly damaging	0.80
R0124:Swt1	UTSW	1	151,267,280 (GRCm39)	missense	probably damaging	1.00
R1037:Swt1	UTSW	1	151,246,320 (GRCm39)	splice site	probably benign
R1171:Swt1	UTSW	1	151,281,272 (GRCm39)	missense	probably damaging	1.00
R1270:Swt1	UTSW	1	151,260,142 (GRCm39)	missense	probably benign	0.00
R1883:Swt1	UTSW	1	151,299,284 (GRCm39)	nonsense	probably null
R2051:Swt1	UTSW	1	151,248,081 (GRCm39)	missense	probably damaging	1.00
R2110:Swt1	UTSW	1	151,279,636 (GRCm39)	missense	probably damaging	0.97
R2185:Swt1	UTSW	1	151,260,219 (GRCm39)	missense	probably damaging	1.00
R3688:Swt1	UTSW	1	151,267,240 (GRCm39)	missense	probably damaging	0.99
R3785:Swt1	UTSW	1	151,255,155 (GRCm39)	missense	probably benign	0.03
R4074:Swt1	UTSW	1	151,270,520 (GRCm39)	missense	probably benign
R4157:Swt1	UTSW	1	151,278,795 (GRCm39)	missense	probably damaging	1.00
R4660:Swt1	UTSW	1	151,283,348 (GRCm39)	missense	probably benign	0.18
R4761:Swt1	UTSW	1	151,276,853 (GRCm39)	missense	probably benign	0.43
R4972:Swt1	UTSW	1	151,299,293 (GRCm39)	missense	probably benign	0.22
R5141:Swt1	UTSW	1	151,287,145 (GRCm39)	missense	probably benign	0.04
R5227:Swt1	UTSW	1	151,278,727 (GRCm39)	nonsense	probably null
R5400:Swt1	UTSW	1	151,288,585 (GRCm39)	missense	probably benign	0.00
R5580:Swt1	UTSW	1	151,260,206 (GRCm39)	missense	probably benign	0.00
R5912:Swt1	UTSW	1	151,287,160 (GRCm39)	missense	probably damaging	1.00
R5945:Swt1	UTSW	1	151,286,921 (GRCm39)	missense	probably benign	0.01
R5973:Swt1	UTSW	1	151,278,700 (GRCm39)	splice site	probably null
R5979:Swt1	UTSW	1	151,283,339 (GRCm39)	missense	possibly damaging	0.94
R6242:Swt1	UTSW	1	151,283,365 (GRCm39)	missense	probably benign	0.41
R6283:Swt1	UTSW	1	151,260,084 (GRCm39)	missense	possibly damaging	0.78
R6951:Swt1	UTSW	1	151,273,019 (GRCm39)	missense	possibly damaging	0.88
R7009:Swt1	UTSW	1	151,246,381 (GRCm39)	missense	possibly damaging	0.94
R7165:Swt1	UTSW	1	151,264,428 (GRCm39)	missense	probably damaging	1.00
R7214:Swt1	UTSW	1	151,270,364 (GRCm39)	missense	possibly damaging	0.63
R7403:Swt1	UTSW	1	151,264,444 (GRCm39)	missense	probably benign	0.01
R7439:Swt1	UTSW	1	151,286,815 (GRCm39)	missense	probably benign	0.04
R7441:Swt1	UTSW	1	151,286,815 (GRCm39)	missense	probably benign	0.04
R7571:Swt1	UTSW	1	151,270,470 (GRCm39)	missense	probably benign	0.00
R8028:Swt1	UTSW	1	151,260,248 (GRCm39)	missense	probably benign	0.26
R8225:Swt1	UTSW	1	151,297,859 (GRCm39)	missense	possibly damaging	0.96
R9075:Swt1	UTSW	1	151,246,245 (GRCm39)	intron	probably benign
R9100:Swt1	UTSW	1	151,299,256 (GRCm39)	critical splice donor site	probably null
R9135:Swt1	UTSW	1	151,244,239 (GRCm39)	missense	possibly damaging	0.61
R9291:Swt1	UTSW	1	151,286,694 (GRCm39)	missense	probably damaging	0.96
R9292:Swt1	UTSW	1	151,278,787 (GRCm39)	missense	probably benign	0.00
R9368:Swt1	UTSW	1	151,286,767 (GRCm39)	missense	possibly damaging	0.90
X0062:Swt1	UTSW	1	151,287,190 (GRCm39)	missense	probably benign	0.43
Z1176:Swt1	UTSW	1	151,264,436 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- CGTTCCTTGGTGCTCACAATGGT -3'
(R):5'- TCAGTTCTTCGACCCAAGCGGTA -3'

Sequencing Primer
(F):5'- AATGACATCTGGTGACTTTGC -3'
(R):5'- TGACTTCACACAGTTGTTCATC -3'

Posted On

2013-05-29