Mutagenetix > Incidental Mutation

Incidental Mutation 'R5512:Adgre5'

440106

Institutional Source

Beutler Lab

Gene Symbol

Adgre5

Ensembl Gene

ENSMUSG00000002885

Gene Name

adhesion G protein-coupled receptor E5

Synonyms

EGF-TM7 receptor, Cd97

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R5512 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

84449874-84467812 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 84455715 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Aspartic acid at position 198 (N198D)

Ref Sequence

ENSEMBL: ENSMUSP00000128220 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000002964] [ENSMUST00000075843] [ENSMUST00000109802] [ENSMUST00000149368] [ENSMUST00000166939] [ENSMUST00000212949] [ENSMUST00000172396]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000002964
AA Change: N200D

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000002964
Gene: ENSMUSG00000002885
AA Change: N200D

Domain	Start	End	E-Value	Type
EGF	30	68	1.63e1	SMART
EGF_CA	69	119	5.92e-8	SMART
EGF_CA	120	167	1.78e-11	SMART
GPS	384	430	2.18e-8	SMART
Pfam:Dicty_CAR	431	703	1.3e-8	PFAM
Pfam:7tm_2	432	672	8.1e-68	PFAM
low complexity region	704	714	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000075843
AA Change: N294D

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000075240
Gene: ENSMUSG00000002885
AA Change: N294D

Domain	Start	End	E-Value	Type
EGF	30	68	1.63e1	SMART
EGF_CA	69	119	5.92e-8	SMART
EGF_CA	165	213	1.38e-8	SMART
EGF_CA	214	261	1.78e-11	SMART
GPS	478	524	2.18e-8	SMART
Pfam:Dicty_CAR	525	798	4.6e-8	PFAM
Pfam:7tm_2	526	766	5.3e-68	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000109802
AA Change: N249D

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000105427
Gene: ENSMUSG00000002885
AA Change: N249D

Domain	Start	End	E-Value	Type
EGF	30	68	1.63e1	SMART
EGF_CA	69	119	5.92e-8	SMART
EGF_CA	120	168	1.38e-8	SMART
EGF_CA	169	216	1.78e-11	SMART
GPS	433	479	2.18e-8	SMART
Pfam:Dicty_CAR	480	752	5.3e-8	PFAM
Pfam:7tm_2	481	721	7.5e-67	PFAM
low complexity region	753	763	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000139797

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000140606

Predicted Effect

probably benign
Transcript: ENSMUST00000149368

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000154075

Predicted Effect

probably benign
Transcript: ENSMUST00000166939
AA Change: N198D

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000128220
Gene: ENSMUSG00000002885
AA Change: N198D

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
EGF	28	66	1.63e1	SMART
EGF_CA	67	117	5.92e-8	SMART
EGF_CA	118	165	1.78e-11	SMART
GPS	382	428	2.18e-8	SMART
Pfam:Dicty_CAR	429	701	2.1e-7	PFAM
Pfam:7tm_2	430	670	1.7e-66	PFAM
low complexity region	702	712	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000212949

Predicted Effect

probably benign
Transcript: ENSMUST00000172396

SMART Domains

Protein: ENSMUSP00000132222
Gene: ENSMUSG00000005481

Domain	Start	End	E-Value	Type
low complexity region	5	18	N/A	INTRINSIC
DEXDc	63	264	4.06e-54	SMART
HELICc	300	381	9.09e-25	SMART

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.3%
20x: 95.4%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the EGF-TM7 subfamily of adhesion G protein-coupled receptors, which mediate cell-cell interactions. These proteins are cleaved by self-catalytic proteolysis into a large extracellular subunit and seven-span transmembrane subunit, which associate at the cell surface as a receptor complex. The encoded protein may play a role in cell adhesion as well as leukocyte recruitment, activation and migration, and contains multiple extracellular EGF-like repeats which mediate binding to chondroitin sulfate and the cell surface complement regulatory protein CD55. Expression of this gene may play a role in the progression of several types of cancer. Alternatively spliced transcript variants encoding multiple isoforms with 3 to 5 EGF-like repeats have been observed for this gene. This gene is found in a cluster with other EGF-TM7 genes on the short arm of chromosome 19. [provided by RefSeq, Jun 2011]
PHENOTYPE: Mice homozygous for disruptions in this gene display a normal phenotype apart from mild granulocytosis. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310057M21Rik	A	G	7: 130,952,389 (GRCm39)	V364A	possibly damaging	Het
Abca8b	C	A	11: 109,868,639 (GRCm39)	G175V	probably damaging	Het
Adgrf4	G	T	17: 42,978,176 (GRCm39)	T389K	probably benign	Het
Apc	T	A	18: 34,443,962 (GRCm39)		probably benign	Het
Appl2	T	A	10: 83,441,682 (GRCm39)	I524F	probably damaging	Het
Arhgef37	G	A	18: 61,632,845 (GRCm39)	Q531*	probably null	Het
Atp7b	T	C	8: 22,502,755 (GRCm39)	T694A	probably benign	Het
Cacna1g	T	A	11: 94,334,968 (GRCm39)	I780F	probably damaging	Het
Calcoco2	T	C	11: 95,994,162 (GRCm39)	K95E	probably damaging	Het
Cars1	T	C	7: 143,123,870 (GRCm39)	D388G	possibly damaging	Het
Ccdc150	A	C	1: 54,393,806 (GRCm39)	E690A	probably damaging	Het
Cdc73	G	T	1: 143,578,354 (GRCm39)	D3E	probably damaging	Het
Cdh23	C	A	10: 60,370,165 (GRCm39)		probably null	Het
Cep170b	T	C	12: 112,699,919 (GRCm39)	S143P	possibly damaging	Het
Cherp	T	C	8: 73,217,110 (GRCm39)	I607V	possibly damaging	Het
CN725425	T	A	15: 91,124,959 (GRCm39)	H166Q	probably benign	Het
Dcaf6	A	G	1: 165,227,404 (GRCm39)	V241A	possibly damaging	Het
Dot1l	C	T	10: 80,624,825 (GRCm39)	P881S	possibly damaging	Het
Drgx	A	G	14: 32,322,001 (GRCm39)	H5R	probably damaging	Het
Dsg1c	A	T	18: 20,405,568 (GRCm39)	N327I	probably damaging	Het
Fbxw7	G	A	3: 84,862,216 (GRCm39)	R182H	probably damaging	Het
Fkbp1b	A	T	12: 4,888,183 (GRCm39)	V24E	probably benign	Het
Fut11	T	C	14: 20,746,069 (GRCm39)	S304P	probably damaging	Het
Ggt1	C	T	10: 75,420,718 (GRCm39)	T361I	probably damaging	Het
Gimap7	G	T	6: 48,700,530 (GRCm39)	A39S	probably benign	Het
Gm12689	T	C	4: 99,184,402 (GRCm39)	I85T	unknown	Het
Gm17541	G	T	12: 4,739,452 (GRCm39)		probably benign	Het
Gmip	T	A	8: 70,270,540 (GRCm39)	V750E	probably benign	Het
Gna14	A	G	19: 16,585,492 (GRCm39)	E290G	probably benign	Het
Gpnmb	T	C	6: 49,022,398 (GRCm39)	V176A	possibly damaging	Het
Hhla1	T	C	15: 65,795,865 (GRCm39)	K447R	probably benign	Het
Hsd3b1	A	G	3: 98,760,521 (GRCm39)	Y157H	probably benign	Het
Iqgap2	G	A	13: 95,811,884 (GRCm39)	Q706*	probably null	Het
Krt222	A	C	11: 99,125,781 (GRCm39)	S283R	probably damaging	Het
Ldb2	G	A	5: 44,637,586 (GRCm39)	R241W	probably damaging	Het
Lrrc8d	G	A	5: 105,960,651 (GRCm39)	E354K	probably benign	Het
Lrrc8d	C	G	5: 105,960,650 (GRCm39)	F353L	probably damaging	Het
Masp2	A	T	4: 148,698,526 (GRCm39)	I536F	probably damaging	Het
Mptx1	A	G	1: 174,160,315 (GRCm39)	D207G	probably benign	Het
Mtpn	C	T	6: 35,489,225 (GRCm39)	D100N	probably benign	Het
Napsa	A	G	7: 44,222,040 (GRCm39)	M1V	probably null	Het
Ncam1	A	T	9: 49,420,999 (GRCm39)		probably null	Het
Nckap5	G	A	1: 125,955,481 (GRCm39)	P425L	possibly damaging	Het
Nol8	A	G	13: 49,830,263 (GRCm39)	S1116G	probably benign	Het
Nrde2	G	T	12: 100,108,509 (GRCm39)	Q361K	probably benign	Het
Nudt13	G	A	14: 20,357,800 (GRCm39)	G133D	probably damaging	Het
Ofcc1	G	T	13: 40,360,286 (GRCm39)	Q248K	probably benign	Het
Olfm4	A	G	14: 80,258,787 (GRCm39)	D345G	probably benign	Het
Or2t6	C	A	14: 14,175,633 (GRCm38)	G150C	probably damaging	Het
Or4k41	G	A	2: 111,280,099 (GRCm39)	V205I	probably benign	Het
Osbpl3	T	G	6: 50,286,340 (GRCm39)	K659N	probably damaging	Het
Pdk2	G	A	11: 94,930,292 (GRCm39)	T48M	probably damaging	Het
Phf11a	A	T	14: 59,524,999 (GRCm39)	D68E	probably benign	Het
Purb	A	G	11: 6,425,702 (GRCm39)	V62A	probably damaging	Het
Rabep2	A	G	7: 126,037,971 (GRCm39)	T248A	possibly damaging	Het
Rps19bp1	CCTTCTTCTTCTTCTTCTTCTT	CCTTCTTCTTCTTCTTCTT	15: 80,145,250 (GRCm39)		probably benign	Het
Rtl1	C	T	12: 109,557,805 (GRCm39)	E1345K	unknown	Het
Sema3e	G	A	5: 14,280,194 (GRCm39)	A358T	probably damaging	Het
Slc29a2	A	G	19: 5,076,426 (GRCm39)	I105V	probably benign	Het
Slc35e2	C	T	4: 155,694,483 (GRCm39)	P10L	probably benign	Het
Slc6a5	G	A	7: 49,591,573 (GRCm39)	V513I	probably damaging	Het
Slco4a1	T	A	2: 180,115,907 (GRCm39)	F681Y	possibly damaging	Het
Sp1	A	G	15: 102,339,445 (GRCm39)	N775S	possibly damaging	Het
Sspo	T	A	6: 48,432,605 (GRCm39)	V827D	probably damaging	Het
Taar7f	C	T	10: 23,926,321 (GRCm39)	T305M	possibly damaging	Het
Tars2	A	T	3: 95,657,728 (GRCm39)	C238S	probably damaging	Het
Tasor2	A	T	13: 3,645,517 (GRCm39)	Y111N	probably damaging	Het
Tnks1bp1	C	A	2: 84,893,178 (GRCm39)	P373Q	probably benign	Het
Tnpo3	A	G	6: 29,575,045 (GRCm39)	L373P	probably damaging	Het
Unc45b	A	C	11: 82,805,898 (GRCm39)	D135A	possibly damaging	Het
Vmn1r235	A	T	17: 21,481,677 (GRCm39)	M1L	probably benign	Het
Vmn2r66	T	C	7: 84,657,149 (GRCm39)	I85M	probably damaging	Het
Vmn2r80	T	G	10: 79,004,066 (GRCm39)	L93W	probably benign	Het
Vwf	G	T	6: 125,650,850 (GRCm39)		probably benign	Het
Ythdf3	A	G	3: 16,238,086 (GRCm39)	R9G	probably damaging	Het
Zfp229	A	G	17: 21,964,017 (GRCm39)		probably null	Het
Zfp958	A	C	8: 4,675,838 (GRCm39)		probably null	Het

Other mutations in Adgre5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00340:Adgre5	APN	8	84,455,030 (GRCm39)	missense	probably benign	0.01
IGL01365:Adgre5	APN	8	84,450,518 (GRCm39)	splice site	probably null
IGL01661:Adgre5	APN	8	84,454,564 (GRCm39)	missense	probably damaging	0.99
IGL01707:Adgre5	APN	8	84,450,976 (GRCm39)	missense	probably damaging	1.00
IGL01760:Adgre5	APN	8	84,458,586 (GRCm39)	missense	probably benign	0.02
IGL02207:Adgre5	APN	8	84,454,913 (GRCm39)	missense	probably damaging	1.00
IGL02483:Adgre5	APN	8	84,451,882 (GRCm39)	missense	probably damaging	1.00
IGL03194:Adgre5	APN	8	84,460,647 (GRCm39)	missense	possibly damaging	0.67
BB001:Adgre5	UTSW	8	84,456,029 (GRCm39)	missense	possibly damaging	0.85
BB011:Adgre5	UTSW	8	84,456,029 (GRCm39)	missense	possibly damaging	0.85
PIT4453001:Adgre5	UTSW	8	84,451,089 (GRCm39)	missense	probably benign	0.08
R0024:Adgre5	UTSW	8	84,454,913 (GRCm39)	missense	probably damaging	1.00
R0137:Adgre5	UTSW	8	84,451,527 (GRCm39)	missense	probably damaging	1.00
R0257:Adgre5	UTSW	8	84,458,624 (GRCm39)	missense	possibly damaging	0.54
R0485:Adgre5	UTSW	8	84,458,627 (GRCm39)	missense	probably damaging	0.99
R0522:Adgre5	UTSW	8	84,456,805 (GRCm39)	missense	probably benign	0.30
R0940:Adgre5	UTSW	8	84,460,126 (GRCm39)	missense	probably damaging	1.00
R1372:Adgre5	UTSW	8	84,454,949 (GRCm39)	missense	probably damaging	0.96
R1617:Adgre5	UTSW	8	84,456,806 (GRCm39)	missense	possibly damaging	0.50
R1679:Adgre5	UTSW	8	84,456,034 (GRCm39)	missense	probably benign	0.09
R1917:Adgre5	UTSW	8	84,455,738 (GRCm39)	missense	probably damaging	0.99
R1918:Adgre5	UTSW	8	84,455,738 (GRCm39)	missense	probably damaging	0.99
R2072:Adgre5	UTSW	8	84,454,433 (GRCm39)	missense	probably benign	0.24
R2831:Adgre5	UTSW	8	84,455,023 (GRCm39)	missense	possibly damaging	0.80
R5250:Adgre5	UTSW	8	84,460,069 (GRCm39)	missense	probably benign
R6077:Adgre5	UTSW	8	84,454,595 (GRCm39)	missense	probably benign
R7486:Adgre5	UTSW	8	84,450,515 (GRCm39)	missense	probably damaging	1.00
R7733:Adgre5	UTSW	8	84,456,025 (GRCm39)	missense	probably benign	0.06
R7924:Adgre5	UTSW	8	84,456,029 (GRCm39)	missense	possibly damaging	0.85
R8388:Adgre5	UTSW	8	84,456,815 (GRCm39)	missense	probably damaging	1.00
R9138:Adgre5	UTSW	8	84,452,563 (GRCm39)	missense	probably benign	0.29
R9625:Adgre5	UTSW	8	84,450,658 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GTCACTGCCATTATAACCCTTGTG -3'
(R):5'- TCCCTACTTGGACACTGCTG -3'

Sequencing Primer
(F):5'- CTTGTGTAGTAGCCACACACATGG -3'
(R):5'- CAGCCCACAGTCAGGTGAGTAG -3'

Posted On

2016-11-08