Incidental Mutation 'R5649:Vmn1r29'
ID 441314
Institutional Source Beutler Lab
Gene Symbol Vmn1r29
Ensembl Gene ENSMUSG00000091734
Gene Name vomeronasal 1 receptor 29
Synonyms V1rc2
MMRRC Submission 043170-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.067) question?
Stock # R5649 (G1)
Quality Score 225
Status Not validated
Chromosome 6
Chromosomal Location 58284282-58285193 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to G at 58284676 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Serine to Cysteine at position 132 (S132C)
Ref Sequence ENSEMBL: ENSMUSP00000154278 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000168416] [ENSMUST00000226971] [ENSMUST00000227761] [ENSMUST00000228038] [ENSMUST00000228909]
AlphaFold Q9EQ41
Predicted Effect probably benign
Transcript: ENSMUST00000168416
AA Change: S132C

PolyPhen 2 Score 0.133 (Sensitivity: 0.92; Specificity: 0.86)
SMART Domains Protein: ENSMUSP00000129069
Gene: ENSMUSG00000091734
AA Change: S132C

DomainStartEndE-ValueType
Pfam:V1R 28 293 1.7e-53 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000226971
AA Change: S132C

PolyPhen 2 Score 0.133 (Sensitivity: 0.92; Specificity: 0.86)
Predicted Effect probably benign
Transcript: ENSMUST00000227761
AA Change: S132C

PolyPhen 2 Score 0.133 (Sensitivity: 0.92; Specificity: 0.86)
Predicted Effect probably benign
Transcript: ENSMUST00000228038
AA Change: S132C

PolyPhen 2 Score 0.133 (Sensitivity: 0.92; Specificity: 0.86)
Predicted Effect probably benign
Transcript: ENSMUST00000228909
AA Change: S132C

PolyPhen 2 Score 0.133 (Sensitivity: 0.92; Specificity: 0.86)
Coding Region Coverage
  • 1x: 99.4%
  • 3x: 98.8%
  • 10x: 97.5%
  • 20x: 96.0%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 40 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca12 T C 1: 71,330,501 (GRCm39) T1385A probably damaging Het
Apc2 T A 10: 80,149,972 (GRCm39) D1646E probably damaging Het
Aspm G A 1: 139,407,407 (GRCm39) R2098H probably benign Het
Atl3 C A 19: 7,509,592 (GRCm39) T435N possibly damaging Het
Cdh22 G T 2: 164,958,200 (GRCm39) T589K probably damaging Het
Cnot3 T C 7: 3,661,082 (GRCm39) L561S probably benign Het
Col5a1 A G 2: 27,841,468 (GRCm39) D363G unknown Het
Cyp24a1 T C 2: 170,338,229 (GRCm39) D105G possibly damaging Het
Dennd4a C A 9: 64,758,491 (GRCm39) probably null Het
Dnah8 A G 17: 31,019,561 (GRCm39) K3878R probably benign Het
Dock4 T C 12: 40,894,539 (GRCm39) S1900P probably benign Het
Fancg A G 4: 43,008,736 (GRCm39) L167P probably damaging Het
Ighd2-8 A G 12: 113,414,487 (GRCm39) S1P possibly damaging Het
Kif28 A G 1: 179,525,336 (GRCm39) probably null Het
Mrpl55 T A 11: 59,095,397 (GRCm39) C20* probably null Het
Myo5a A G 9: 75,079,001 (GRCm39) K920E possibly damaging Het
Naa35 G A 13: 59,770,680 (GRCm39) probably benign Het
Olfm3 A G 3: 114,890,573 (GRCm39) R76G probably damaging Het
Or14a258 T C 7: 86,035,521 (GRCm39) M116V probably damaging Het
Or2ag1 T C 7: 106,313,373 (GRCm39) R172G possibly damaging Het
Pcdha12 A T 18: 37,155,468 (GRCm39) D729V probably benign Het
Phf11c T C 14: 59,622,981 (GRCm39) probably null Het
Phf20 T A 2: 156,093,688 (GRCm39) probably null Het
Plbd1 T A 6: 136,593,987 (GRCm39) Y376F probably benign Het
Poglut1 A G 16: 38,352,173 (GRCm39) V257A probably damaging Het
Reln A G 5: 22,106,623 (GRCm39) I3249T probably benign Het
Rgsl1 G A 1: 153,701,639 (GRCm39) P272S possibly damaging Het
Slc15a2 A T 16: 36,592,472 (GRCm39) Y197* probably null Het
Slc45a2 C T 15: 11,012,693 (GRCm39) T232I probably benign Het
Ssc5d T A 7: 4,929,517 (GRCm39) probably null Het
Thbs2 T C 17: 14,910,215 (GRCm39) Y128C probably damaging Het
Them4 A T 3: 94,238,851 (GRCm39) L219F possibly damaging Het
Tmem30b G T 12: 73,592,940 (GRCm39) N58K probably benign Het
Trappc2b T C 11: 51,576,799 (GRCm39) E33G probably benign Het
Ttc29 G A 8: 78,972,942 (GRCm39) E131K possibly damaging Het
Vmn1r53 G A 6: 90,200,742 (GRCm39) A194V probably benign Het
Wdr86 A T 5: 24,923,085 (GRCm39) H202Q probably benign Het
Xirp2 A G 2: 67,347,239 (GRCm39) D3160G probably benign Het
Xkr5 T C 8: 18,983,982 (GRCm39) D520G probably benign Het
Zfp607b T G 7: 27,403,406 (GRCm39) C621G probably damaging Het
Other mutations in Vmn1r29
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02504:Vmn1r29 APN 6 58,284,655 (GRCm39) missense probably benign 0.03
IGL03351:Vmn1r29 APN 6 58,284,735 (GRCm39) missense probably damaging 1.00
R0457:Vmn1r29 UTSW 6 58,285,072 (GRCm39) missense probably benign 0.35
R0594:Vmn1r29 UTSW 6 58,284,757 (GRCm39) missense probably benign 0.35
R0735:Vmn1r29 UTSW 6 58,284,717 (GRCm39) missense probably damaging 0.96
R1422:Vmn1r29 UTSW 6 58,284,871 (GRCm39) missense probably damaging 1.00
R1476:Vmn1r29 UTSW 6 58,284,663 (GRCm39) missense probably benign 0.23
R1679:Vmn1r29 UTSW 6 58,285,003 (GRCm39) missense probably damaging 1.00
R1831:Vmn1r29 UTSW 6 58,284,692 (GRCm39) nonsense probably null
R1925:Vmn1r29 UTSW 6 58,285,087 (GRCm39) missense possibly damaging 0.79
R1933:Vmn1r29 UTSW 6 58,284,405 (GRCm39) missense probably benign 0.03
R4582:Vmn1r29 UTSW 6 58,285,017 (GRCm39) missense probably damaging 0.98
R4677:Vmn1r29 UTSW 6 58,284,285 (GRCm39) missense probably benign 0.02
R4706:Vmn1r29 UTSW 6 58,285,136 (GRCm39) missense probably benign 0.00
R5023:Vmn1r29 UTSW 6 58,285,052 (GRCm39) nonsense probably null
R5542:Vmn1r29 UTSW 6 58,285,108 (GRCm39) missense probably benign 0.14
R5656:Vmn1r29 UTSW 6 58,285,152 (GRCm39) missense possibly damaging 0.94
R5906:Vmn1r29 UTSW 6 58,284,736 (GRCm39) missense probably benign 0.19
R6078:Vmn1r29 UTSW 6 58,285,080 (GRCm39) missense probably benign 0.01
R6349:Vmn1r29 UTSW 6 58,284,412 (GRCm39) missense probably damaging 1.00
R7946:Vmn1r29 UTSW 6 58,284,834 (GRCm39) missense probably benign 0.18
R8554:Vmn1r29 UTSW 6 58,285,191 (GRCm39) makesense probably null
R8944:Vmn1r29 UTSW 6 58,284,274 (GRCm39) start gained probably benign
R8955:Vmn1r29 UTSW 6 58,284,284 (GRCm39) start codon destroyed probably null 1.00
R9268:Vmn1r29 UTSW 6 58,284,577 (GRCm39) missense probably damaging 1.00
R9688:Vmn1r29 UTSW 6 58,284,739 (GRCm39) missense probably benign 0.02
RF020:Vmn1r29 UTSW 6 58,284,528 (GRCm39) missense probably benign 0.01
U15987:Vmn1r29 UTSW 6 58,285,080 (GRCm39) missense probably benign 0.01
Predicted Primers PCR Primer
(F):5'- TGAGACACTGAACATTGAGAATGAC -3'
(R):5'- GCTTGCATTGCCTCTGATGC -3'

Sequencing Primer
(F):5'- CTGAACATTGAGAATGACTTCAAATG -3'
(R):5'- CAACATGTATGTGCTTGTAGTCAGC -3'
Posted On 2016-11-08