Mutagenetix > Incidental Mutation

Incidental Mutation 'R5755:Spata31d1c'

445008

Institutional Source

Beutler Lab

Gene Symbol

Spata31d1c

Ensembl Gene

ENSMUSG00000074849

Gene Name

spermatogenesis associated 31 subfamily D, member 1C

Synonyms

4932441B19Rik, Fam75d1c

MMRRC Submission

043202-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R5755 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

65180872-65185816 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 65184341 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Lysine at position 628 (Q628K)

Ref Sequence

ENSEMBL: ENSMUSP00000097024 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000099427]

AlphaFold

E9QAF1

Predicted Effect

probably benign
Transcript: ENSMUST00000099427
AA Change: Q628K

PolyPhen 2 Score 0.115 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000097024
Gene: ENSMUSG00000074849
AA Change: Q628K

Domain	Start	End	E-Value	Type
transmembrane domain	22	44	N/A	INTRINSIC
Pfam:DUF4599	63	148	2.4e-31	PFAM
low complexity region	178	190	N/A	INTRINSIC
low complexity region	196	213	N/A	INTRINSIC
low complexity region	218	233	N/A	INTRINSIC
low complexity region	237	251	N/A	INTRINSIC
Pfam:FAM75	380	742	1.4e-120	PFAM

Coding Region Coverage

1x: 99.3%
3x: 98.6%
10x: 97.3%
20x: 95.4%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 40 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca3	T	A	17: 24,617,428 (GRCm39)	F1042I	probably damaging	Het
Ahnak	A	G	19: 8,979,096 (GRCm39)	T127A	probably benign	Het
Aloxe3	A	G	11: 69,023,575 (GRCm39)	I233V	probably benign	Het
Ambn	T	A	5: 88,612,350 (GRCm39)		probably null	Het
Atp2b1	A	G	10: 98,839,032 (GRCm39)	E39G	probably damaging	Het
Atp2b1	T	C	10: 98,830,671 (GRCm39)		probably null	Het
Camsap2	C	T	1: 136,210,065 (GRCm39)	G476R	probably damaging	Het
Cdk4	T	A	10: 126,900,591 (GRCm39)		probably null	Het
Dcaf12	T	C	4: 41,313,356 (GRCm39)	Y63C	probably damaging	Het
Dtna	T	A	18: 23,754,520 (GRCm39)	S445T	probably benign	Het
Ehmt2	T	C	17: 35,127,214 (GRCm39)	M109T	probably benign	Het
Erbb4	T	C	1: 68,599,678 (GRCm39)	E133G	possibly damaging	Het
F830016B08Rik	T	A	18: 60,433,878 (GRCm39)	F320L	probably damaging	Het
Fyco1	A	G	9: 123,657,773 (GRCm39)	V801A	possibly damaging	Het
Gm57858	A	T	3: 36,071,842 (GRCm39)	M501K	probably benign	Het
Jag1	T	A	2: 136,930,610 (GRCm39)	N674Y	probably damaging	Het
Kcnj10	A	G	1: 172,197,161 (GRCm39)	E225G	possibly damaging	Het
Klhl11	T	A	11: 100,355,177 (GRCm39)	M215L	probably benign	Het
Kmt2d	G	T	15: 98,761,527 (GRCm39)	P608T	unknown	Het
Map3k19	T	C	1: 127,750,118 (GRCm39)	M1078V	probably benign	Het
Neto1	T	C	18: 86,517,219 (GRCm39)	V512A	probably damaging	Het
Notch1	T	C	2: 26,363,704 (GRCm39)	D910G	probably benign	Het
Or1e19	T	A	11: 73,316,557 (GRCm39)	N84I	probably benign	Het
Or2w1	T	A	13: 21,317,695 (GRCm39)	I250K	probably damaging	Het
Parvg	T	C	15: 84,215,297 (GRCm39)		probably null	Het
Pi4kb	A	T	3: 94,901,608 (GRCm39)		probably null	Het
Plag1	T	C	4: 3,904,492 (GRCm39)	K233R	possibly damaging	Het
Polr1h	T	A	17: 37,269,049 (GRCm39)	D43V	probably benign	Het
Rasgrp3	A	C	17: 75,831,940 (GRCm39)	D587A	probably benign	Het
Slc7a10	A	T	7: 34,898,336 (GRCm39)	I336F	probably damaging	Het
Snx8	T	G	5: 140,338,796 (GRCm39)	E254A	possibly damaging	Het
Sp3	A	T	2: 72,768,725 (GRCm39)		silent	Het
Sp8	G	T	12: 118,812,822 (GRCm39)	A226S	probably damaging	Het
Styx	C	A	14: 45,605,910 (GRCm39)	T138K	probably benign	Het
Syngr3	A	G	17: 24,905,509 (GRCm39)	F155S	probably damaging	Het
Trip11	C	T	12: 101,851,924 (GRCm39)	W428*	probably null	Het
Ubr4	A	G	4: 139,187,406 (GRCm39)	T3825A	possibly damaging	Het
Vmn2r113	A	T	17: 23,176,955 (GRCm39)	T580S	probably benign	Het
Zbtb11	T	A	16: 55,821,076 (GRCm39)	S724R	probably benign	Het
Zcchc4	T	C	5: 52,973,511 (GRCm39)	S379P	probably benign	Het

Other mutations in Spata31d1c

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01639:Spata31d1c	APN	13	65,183,903 (GRCm39)	missense	probably damaging	1.00
IGL02830:Spata31d1c	APN	13	65,183,180 (GRCm39)	missense	probably benign	0.25
IGL02947:Spata31d1c	APN	13	65,182,759 (GRCm39)	nonsense	probably null
IGL03133:Spata31d1c	APN	13	65,182,799 (GRCm39)	missense	probably benign	0.18
IGL03176:Spata31d1c	APN	13	65,184,825 (GRCm39)	missense	probably benign	0.01
IGL03183:Spata31d1c	APN	13	65,183,009 (GRCm39)	missense	possibly damaging	0.86
IGL03206:Spata31d1c	APN	13	65,183,407 (GRCm39)	missense	probably benign	0.41
PIT4382001:Spata31d1c	UTSW	13	65,183,985 (GRCm39)	missense	probably benign	0.01
R0054:Spata31d1c	UTSW	13	65,180,876 (GRCm39)	start gained	probably benign
R0959:Spata31d1c	UTSW	13	65,184,129 (GRCm39)	missense	probably damaging	1.00
R1232:Spata31d1c	UTSW	13	65,184,428 (GRCm39)	missense	probably benign
R1347:Spata31d1c	UTSW	13	65,183,202 (GRCm39)	missense	probably benign	0.00
R1347:Spata31d1c	UTSW	13	65,183,202 (GRCm39)	missense	probably benign	0.00
R1381:Spata31d1c	UTSW	13	65,184,368 (GRCm39)	missense	probably benign	0.08
R1573:Spata31d1c	UTSW	13	65,182,883 (GRCm39)	missense	possibly damaging	0.92
R1582:Spata31d1c	UTSW	13	65,181,038 (GRCm39)	missense	probably benign
R1639:Spata31d1c	UTSW	13	65,183,853 (GRCm39)	missense	probably benign
R1716:Spata31d1c	UTSW	13	65,181,030 (GRCm39)	missense	possibly damaging	0.86
R1781:Spata31d1c	UTSW	13	65,183,985 (GRCm39)	missense	probably benign	0.01
R1907:Spata31d1c	UTSW	13	65,183,690 (GRCm39)	missense	probably benign	0.03
R2012:Spata31d1c	UTSW	13	65,183,041 (GRCm39)	missense	possibly damaging	0.91
R2152:Spata31d1c	UTSW	13	65,181,779 (GRCm39)	critical splice donor site	probably null
R2211:Spata31d1c	UTSW	13	65,183,753 (GRCm39)	missense	probably benign	0.04
R2571:Spata31d1c	UTSW	13	65,184,198 (GRCm39)	missense	probably damaging	1.00
R2908:Spata31d1c	UTSW	13	65,181,005 (GRCm39)	missense	possibly damaging	0.63
R3978:Spata31d1c	UTSW	13	65,182,974 (GRCm39)	missense	possibly damaging	0.61
R3979:Spata31d1c	UTSW	13	65,182,974 (GRCm39)	missense	possibly damaging	0.61
R3980:Spata31d1c	UTSW	13	65,182,974 (GRCm39)	missense	possibly damaging	0.61
R3981:Spata31d1c	UTSW	13	65,182,925 (GRCm39)	missense	possibly damaging	0.68
R4014:Spata31d1c	UTSW	13	65,183,213 (GRCm39)	missense	probably damaging	0.99
R4255:Spata31d1c	UTSW	13	65,183,531 (GRCm39)	missense	probably benign	0.04
R4255:Spata31d1c	UTSW	13	65,183,502 (GRCm39)	nonsense	probably null
R4592:Spata31d1c	UTSW	13	65,183,874 (GRCm39)	missense	probably damaging	0.99
R4597:Spata31d1c	UTSW	13	65,183,427 (GRCm39)	nonsense	probably null
R4624:Spata31d1c	UTSW	13	65,184,411 (GRCm39)	missense	probably benign
R4641:Spata31d1c	UTSW	13	65,182,862 (GRCm39)	missense	probably benign	0.01
R4863:Spata31d1c	UTSW	13	65,183,604 (GRCm39)	nonsense	probably null
R5084:Spata31d1c	UTSW	13	65,182,944 (GRCm39)	missense	probably damaging	0.98
R5152:Spata31d1c	UTSW	13	65,183,409 (GRCm39)	missense	probably damaging	1.00
R5230:Spata31d1c	UTSW	13	65,183,248 (GRCm39)	missense	probably benign	0.41
R5267:Spata31d1c	UTSW	13	65,183,718 (GRCm39)	missense	probably damaging	0.98
R5615:Spata31d1c	UTSW	13	65,183,078 (GRCm39)	missense	possibly damaging	0.61
R5935:Spata31d1c	UTSW	13	65,184,894 (GRCm39)	missense	possibly damaging	0.68
R6017:Spata31d1c	UTSW	13	65,182,893 (GRCm39)	missense	possibly damaging	0.91
R6131:Spata31d1c	UTSW	13	65,183,485 (GRCm39)	missense	probably benign	0.10
R6359:Spata31d1c	UTSW	13	65,183,406 (GRCm39)	missense	possibly damaging	0.63
R6723:Spata31d1c	UTSW	13	65,183,758 (GRCm39)	missense	probably benign	0.01
R7028:Spata31d1c	UTSW	13	65,183,877 (GRCm39)	missense	probably damaging	0.98
R7336:Spata31d1c	UTSW	13	65,183,942 (GRCm39)	missense	probably damaging	0.99
R7426:Spata31d1c	UTSW	13	65,183,175 (GRCm39)	missense	probably benign
R7552:Spata31d1c	UTSW	13	65,183,937 (GRCm39)	missense	probably damaging	0.98
R7605:Spata31d1c	UTSW	13	65,183,654 (GRCm39)	missense	probably benign	0.00
R7666:Spata31d1c	UTSW	13	65,183,814 (GRCm39)	missense	probably benign	0.01
R8403:Spata31d1c	UTSW	13	65,184,044 (GRCm39)	missense	probably benign	0.42
R8445:Spata31d1c	UTSW	13	65,180,991 (GRCm39)	missense	probably damaging	0.98
R8513:Spata31d1c	UTSW	13	65,180,991 (GRCm39)	missense	probably damaging	0.98
R8515:Spata31d1c	UTSW	13	65,180,991 (GRCm39)	missense	probably damaging	0.98
R8523:Spata31d1c	UTSW	13	65,180,991 (GRCm39)	missense	probably damaging	0.98
R8799:Spata31d1c	UTSW	13	65,184,140 (GRCm39)	missense	possibly damaging	0.92
R8817:Spata31d1c	UTSW	13	65,182,376 (GRCm39)	missense	probably damaging	0.98
R8854:Spata31d1c	UTSW	13	65,183,804 (GRCm39)	missense	possibly damaging	0.82
R8917:Spata31d1c	UTSW	13	65,183,429 (GRCm39)	missense	probably benign	0.02
R9084:Spata31d1c	UTSW	13	65,182,959 (GRCm39)	missense	probably benign
R9197:Spata31d1c	UTSW	13	65,183,690 (GRCm39)	missense	probably benign	0.01
R9201:Spata31d1c	UTSW	13	65,184,773 (GRCm39)	missense	possibly damaging	0.48
R9261:Spata31d1c	UTSW	13	65,184,680 (GRCm39)	missense	probably damaging	0.99
R9516:Spata31d1c	UTSW	13	65,184,040 (GRCm39)	missense	probably damaging	1.00
X0022:Spata31d1c	UTSW	13	65,184,741 (GRCm39)	missense	probably benign	0.35

Predicted Primers

PCR Primer
(F):5'- AGCTCTCCAAGACCCATGTTC -3'
(R):5'- ATTGCAGGCCGTTATCTAGAG -3'

Sequencing Primer
(F):5'- TTTATCACCAGTGAGCTCCAGAAG -3'
(R):5'- AGAGTGCCCTTAGTGTTACTCCATG -3'

Posted On

2016-11-21