Incidental Mutation 'R5759:Phf19'
ID 445171
Institutional Source Beutler Lab
Gene Symbol Phf19
Ensembl Gene ENSMUSG00000026873
Gene Name PHD finger protein 19
Synonyms 3321402G02Rik, 3110009G19Rik
MMRRC Submission 043361-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R5759 (G1)
Quality Score 225
Status Not validated
Chromosome 2
Chromosomal Location 34783769-34804038 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to G at 34787135 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Alanine at position 443 (D443A)
Ref Sequence ENSEMBL: ENSMUSP00000028232 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000028228] [ENSMUST00000028232]
AlphaFold Q9CXG9
Predicted Effect probably benign
Transcript: ENSMUST00000028228
SMART Domains Protein: ENSMUSP00000028228
Gene: ENSMUSG00000026870

DomainStartEndE-ValueType
transmembrane domain 12 34 N/A INTRINSIC
Pfam:CutA1 53 109 2.4e-16 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000028228
SMART Domains Protein: ENSMUSP00000144258
Gene: ENSMUSG00000026870

DomainStartEndE-ValueType
transmembrane domain 12 34 N/A INTRINSIC
Pfam:CutA1 54 110 9e-17 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000028232
AA Change: D443A

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000028232
Gene: ENSMUSG00000026873
AA Change: D443A

DomainStartEndE-ValueType
TUDOR 36 93 2.33e-8 SMART
PHD 96 147 2.87e-5 SMART
low complexity region 154 165 N/A INTRINSIC
PHD 195 245 2.11e-3 SMART
low complexity region 382 395 N/A INTRINSIC
low complexity region 442 464 N/A INTRINSIC
Pfam:Mtf2_C 529 576 5.2e-30 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000128394
Predicted Effect noncoding transcript
Transcript: ENSMUST00000128663
Predicted Effect noncoding transcript
Transcript: ENSMUST00000129911
Coding Region Coverage
  • 1x: 99.5%
  • 3x: 98.8%
  • 10x: 97.2%
  • 20x: 95.1%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 46 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1110002E22Rik T C 3: 137,774,419 (GRCm39) S1203P probably benign Het
Adamts1 A G 16: 85,594,936 (GRCm39) V341A possibly damaging Het
Arf2 G A 11: 103,874,459 (GRCm39) G144S probably benign Het
Atr A G 9: 95,756,455 (GRCm39) N862D probably benign Het
Cep295nl T C 11: 118,224,472 (GRCm39) H124R possibly damaging Het
Chd6 C T 2: 160,825,682 (GRCm39) V1141I possibly damaging Het
Chst5 C A 8: 112,616,842 (GRCm39) K259N probably benign Het
Dchs1 T A 7: 105,413,383 (GRCm39) D1144V probably damaging Het
Dmxl2 T C 9: 54,282,792 (GRCm39) Y2795C probably damaging Het
Dnah7b A G 1: 46,316,280 (GRCm39) N3131S probably damaging Het
Dnah7c G A 1: 46,654,527 (GRCm39) G1436R probably damaging Het
Emp2 T A 16: 10,102,374 (GRCm39) Y146F probably damaging Het
Exoc6 C T 19: 37,562,189 (GRCm39) Q148* probably null Het
Fam13b T C 18: 34,630,488 (GRCm39) D90G probably damaging Het
Fam186b T G 15: 99,177,598 (GRCm39) Y576S probably benign Het
Fras1 T C 5: 96,857,775 (GRCm39) V2023A probably benign Het
Grm5 A C 7: 87,675,808 (GRCm39) M441L probably damaging Het
Hhatl A G 9: 121,617,343 (GRCm39) Y297H probably damaging Het
Ifi30 A G 8: 71,219,188 (GRCm39) probably benign Het
Ing2 G T 8: 48,122,040 (GRCm39) N169K possibly damaging Het
Kat6a T G 8: 23,428,028 (GRCm39) S1128A probably benign Het
Madd T C 2: 90,992,420 (GRCm39) E1041G possibly damaging Het
Mcm3 CT CTT 1: 20,878,972 (GRCm39) probably null Het
Mfsd5 G A 15: 102,189,513 (GRCm39) G295D possibly damaging Het
Minar1 A T 9: 89,483,125 (GRCm39) N757K probably benign Het
Mmp20 T A 9: 7,628,378 (GRCm39) probably null Het
Mybphl T C 3: 108,282,070 (GRCm39) V100A probably benign Het
Ndfip2 T A 14: 105,539,750 (GRCm39) probably null Het
Or7e170 A G 9: 19,795,484 (GRCm39) V39A probably benign Het
Or7e175 T A 9: 20,049,228 (GRCm39) V272E probably benign Het
Or8b1c T A 9: 38,384,831 (GRCm39) S263T possibly damaging Het
Piezo1 A G 8: 123,234,394 (GRCm39) V84A probably damaging Het
Septin9 A G 11: 117,243,094 (GRCm39) I94V probably benign Het
Slc35a1 C A 4: 34,675,032 (GRCm39) V132L probably benign Het
Sntg1 G A 1: 8,484,494 (GRCm39) S442L probably benign Het
Tcf25 A G 8: 124,108,196 (GRCm39) T84A probably benign Het
Tchhl1 C G 3: 93,378,863 (GRCm39) S522R probably damaging Het
Tmem106b A G 6: 13,075,041 (GRCm39) E76G probably damaging Het
Tnk2 C T 16: 32,499,482 (GRCm39) P932S probably benign Het
Trib1 G A 15: 59,526,350 (GRCm39) V307I probably benign Het
Trib3 A T 2: 152,185,215 (GRCm39) D11E probably benign Het
Trim34b T C 7: 103,980,640 (GRCm39) S243P possibly damaging Het
Vmn2r50 A G 7: 9,781,905 (GRCm39) I280T probably damaging Het
Zfp1010 A T 2: 176,956,765 (GRCm39) C244* probably null Het
Zfp445 G T 9: 122,682,211 (GRCm39) Q577K probably benign Het
Zfp599 T C 9: 22,160,957 (GRCm39) K403E probably damaging Het
Other mutations in Phf19
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01528:Phf19 APN 2 34,787,119 (GRCm39) missense probably damaging 0.99
IGL01862:Phf19 APN 2 34,787,067 (GRCm39) critical splice donor site probably null
R0079:Phf19 UTSW 2 34,785,966 (GRCm39) missense probably benign
R0183:Phf19 UTSW 2 34,801,214 (GRCm39) missense probably damaging 1.00
R1289:Phf19 UTSW 2 34,786,042 (GRCm39) missense probably benign
R1632:Phf19 UTSW 2 34,801,631 (GRCm39) missense probably damaging 1.00
R1829:Phf19 UTSW 2 34,801,781 (GRCm39) missense probably benign 0.00
R2057:Phf19 UTSW 2 34,789,620 (GRCm39) missense probably benign 0.06
R2475:Phf19 UTSW 2 34,785,807 (GRCm39) missense probably benign
R3039:Phf19 UTSW 2 34,795,534 (GRCm39) missense probably benign 0.26
R3803:Phf19 UTSW 2 34,789,670 (GRCm39) missense probably damaging 0.99
R3804:Phf19 UTSW 2 34,789,670 (GRCm39) missense probably damaging 0.99
R4885:Phf19 UTSW 2 34,789,718 (GRCm39) missense probably damaging 0.99
R6061:Phf19 UTSW 2 34,787,129 (GRCm39) missense probably damaging 1.00
R6949:Phf19 UTSW 2 34,794,143 (GRCm39) missense probably damaging 1.00
R7080:Phf19 UTSW 2 34,788,724 (GRCm39) splice site probably null
R7730:Phf19 UTSW 2 34,785,816 (GRCm39) missense probably damaging 1.00
R7956:Phf19 UTSW 2 34,796,567 (GRCm39) missense possibly damaging 0.84
R8900:Phf19 UTSW 2 34,795,484 (GRCm39) missense probably damaging 0.99
R9500:Phf19 UTSW 2 34,801,708 (GRCm39) nonsense probably null
Predicted Primers PCR Primer
(F):5'- TTGACTAGAGGGATCACATAGCC -3'
(R):5'- CGGCTCTGATGACTGAATGG -3'

Sequencing Primer
(F):5'- TAGAGGGATCACATAGCCACTGC -3'
(R):5'- CTCTGATGACTGAATGGTGAAAAAGC -3'
Posted On 2016-11-21