Mutagenetix > Incidental Mutation

Incidental Mutation 'R5773:Brd1'

445529

Institutional Source

Beutler Lab

Gene Symbol

Brd1

Ensembl Gene

ENSMUSG00000022387

Gene Name

bromodomain containing 1

Synonyms

1110059H06Rik

MMRRC Submission

043372-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R5773 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

88571237-88618436 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 88573752 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Glutamic Acid at position 1116 (K1116E)

Ref Sequence

ENSEMBL: ENSMUSP00000105007 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000109380] [ENSMUST00000109381]

AlphaFold

G5E8P1

Predicted Effect

probably benign
Transcript: ENSMUST00000109380
AA Change: K985E

PolyPhen 2 Score 0.107 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000105006
Gene: ENSMUSG00000022387
AA Change: K985E

Domain	Start	End	E-Value	Type
Pfam:EPL1	46	196	3.3e-38	PFAM
PHD	216	262	3.17e-7	SMART
PHD	326	389	5.16e-7	SMART
low complexity region	415	436	N/A	INTRINSIC
low complexity region	492	504	N/A	INTRINSIC
low complexity region	532	551	N/A	INTRINSIC
BROMO	560	668	8.59e-39	SMART
coiled coil region	704	726	N/A	INTRINSIC
low complexity region	836	869	N/A	INTRINSIC
PWWP	927	1010	2.25e-39	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000109381
AA Change: K1116E

PolyPhen 2 Score 0.139 (Sensitivity: 0.92; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000105007
Gene: ENSMUSG00000022387
AA Change: K1116E

Domain	Start	End	E-Value	Type
Pfam:EPL1	47	196	3.9e-37	PFAM
PHD	216	262	3.17e-7	SMART
PHD	326	389	5.16e-7	SMART
low complexity region	415	436	N/A	INTRINSIC
low complexity region	492	504	N/A	INTRINSIC
low complexity region	532	551	N/A	INTRINSIC
BROMO	560	668	8.59e-39	SMART
coiled coil region	704	726	N/A	INTRINSIC
low complexity region	857	876	N/A	INTRINSIC
low complexity region	887	898	N/A	INTRINSIC
low complexity region	967	1000	N/A	INTRINSIC
PWWP	1058	1141	2.25e-39	SMART

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.4%
20x: 95.8%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a bromodomain-containing protein that localizes to the nucleus and can interact with DNA and histone tails. The encoded protein is a component of the MOZ/MORF acetyltransferase complex and can stimulate acetylation of histones H3 and H4, thereby potentially playing a role in gene activation. Variation in this gene is associated with schozophrenia and bipolar disorder in some study populations. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2015]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit prenatal letahlity associated with severe growth retardation, abnormal lens, anemia, and impaired fetal hematopoiesis and erythropoiesis. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 57 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acss2	G	A	2: 155,416,614 (GRCm39)		probably null	Het
Akna	C	T	4: 63,313,307 (GRCm39)	S272N	probably benign	Het
Ap2m1	T	C	16: 20,362,140 (GRCm39)	V416A	probably damaging	Het
Atp7b	A	G	8: 22,517,879 (GRCm39)	F320L	probably benign	Het
Ccdc186	T	C	19: 56,801,919 (GRCm39)	D66G	probably benign	Het
Cdh4	A	G	2: 179,527,789 (GRCm39)	Y503C	probably damaging	Het
Cfb	C	A	17: 35,076,248 (GRCm39)	E166*	probably null	Het
Cmtm1	A	T	8: 105,031,808 (GRCm39)	F90I	probably damaging	Het
Col1a1	A	T	11: 94,830,255 (GRCm39)	K160N	probably benign	Het
Cradd	T	C	10: 95,011,823 (GRCm39)	I106V	probably benign	Het
Defa17	A	G	8: 22,146,574 (GRCm39)	R67G	probably damaging	Het
Dgkh	T	C	14: 78,832,895 (GRCm39)	N765S	probably damaging	Het
Dock5	A	G	14: 68,033,507 (GRCm39)	V954A	possibly damaging	Het
Eif2d	A	G	1: 131,086,040 (GRCm39)		probably null	Het
Epg5	T	A	18: 78,004,040 (GRCm39)	F683I	probably damaging	Het
Fhad1	T	G	4: 141,656,881 (GRCm39)	K91T	probably damaging	Het
Fut11	A	T	14: 20,748,383 (GRCm39)	D476V	probably damaging	Het
Gldn	T	C	9: 54,241,775 (GRCm39)		probably null	Het
Gm7247	C	T	14: 51,601,805 (GRCm39)	S26F	probably benign	Het
Gm8674	T	A	13: 50,055,912 (GRCm39)		noncoding transcript	Het
Gtpbp6	C	A	5: 110,254,757 (GRCm39)	E168D	possibly damaging	Het
Hinfp	T	A	9: 44,210,533 (GRCm39)	H163L	probably benign	Het
Igkv6-29	C	A	6: 70,115,584 (GRCm39)	G70V	possibly damaging	Het
Ing3	T	A	6: 21,971,834 (GRCm39)	C368S	probably damaging	Het
Itih1	A	G	14: 30,657,356 (GRCm39)	V489A	possibly damaging	Het
Itsn2	T	C	12: 4,757,089 (GRCm39)	L1393P	probably damaging	Het
Kcnj13	T	C	1: 87,314,389 (GRCm39)	T278A	probably damaging	Het
Kntc1	G	A	5: 123,932,220 (GRCm39)	R1338Q	probably damaging	Het
Lipi	T	A	16: 75,370,813 (GRCm39)	T135S	probably damaging	Het
Map7	A	G	10: 20,122,390 (GRCm39)	K152R	probably benign	Het
Mmp24	A	G	2: 155,641,829 (GRCm39)	Y219C	probably damaging	Het
Nup188	T	C	2: 30,212,208 (GRCm39)	V565A	possibly damaging	Het
Nup210	T	C	6: 91,062,865 (GRCm39)	K265E	probably damaging	Het
Or10ak9	A	G	4: 118,726,718 (GRCm39)	T247A	probably damaging	Het
Pcdha6	A	T	18: 37,102,643 (GRCm39)	H612L	probably benign	Het
Pgpep1	G	A	8: 71,105,101 (GRCm39)	T53M	probably damaging	Het
Pld2	G	T	11: 70,446,758 (GRCm39)	S778I	probably damaging	Het
Ppef2	A	C	5: 92,398,420 (GRCm39)	Y33D	probably damaging	Het
Ppfibp2	A	T	7: 107,285,079 (GRCm39)	T129S	possibly damaging	Het
Prickle1	G	T	15: 93,406,478 (GRCm39)	H182N	probably damaging	Het
R3hdm2	T	A	10: 127,280,172 (GRCm39)		probably benign	Het
Rbm12b1	A	T	4: 12,145,765 (GRCm39)	E579V	probably damaging	Het
Rsf1	GGC	GGCGGCGGCTGC	7: 97,229,140 (GRCm39)		probably benign	Het
Slc1a6	T	G	10: 78,629,111 (GRCm39)		probably null	Het
Slc27a6	G	T	18: 58,715,245 (GRCm39)	A283S	probably damaging	Het
Spats2l	T	A	1: 57,918,708 (GRCm39)	N27K	possibly damaging	Het
Srgap1	T	C	10: 121,732,614 (GRCm39)	M155V	probably benign	Het
Stxbp5l	C	A	16: 37,028,459 (GRCm39)	A535S	probably damaging	Het
Svep1	C	A	4: 58,099,985 (GRCm39)	C1353F	possibly damaging	Het
Taar4	T	A	10: 23,837,056 (GRCm39)	I222N	probably damaging	Het
Tlr6	A	G	5: 65,111,846 (GRCm39)	F354L	probably benign	Het
Trp53bp1	A	G	2: 121,074,395 (GRCm39)	S452P	probably damaging	Het
Ttll5	GCCCTGCGGGGCTGCCACGCTGTCGATCCGGCAGCTAC	G	12: 85,980,329 (GRCm39)		probably null	Het
Usp42	A	T	5: 143,699,467 (GRCm39)	M1264K	probably benign	Het
Zfp865	A	T	7: 5,037,693 (GRCm39)		probably benign	Het
Zfyve26	A	T	12: 79,334,511 (GRCm39)	L169Q	probably damaging	Het
Zmym4	A	T	4: 126,799,163 (GRCm39)	N383K	possibly damaging	Het

Other mutations in Brd1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00432:Brd1	APN	15	88,614,361 (GRCm39)	missense	probably benign	0.38
IGL00924:Brd1	APN	15	88,613,612 (GRCm39)	missense	possibly damaging	0.80
IGL01626:Brd1	APN	15	88,585,090 (GRCm39)	missense	probably damaging	1.00
IGL02569:Brd1	APN	15	88,598,132 (GRCm39)	missense	probably damaging	1.00
IGL02646:Brd1	APN	15	88,585,080 (GRCm39)	missense	probably damaging	1.00
IGL03130:Brd1	APN	15	88,572,577 (GRCm39)	missense	probably benign
IGL03343:Brd1	APN	15	88,591,454 (GRCm39)	missense	possibly damaging	0.89
spry	UTSW	15	88,572,558 (GRCm39)	missense	possibly damaging	0.47
R0089:Brd1	UTSW	15	88,585,401 (GRCm39)	missense	probably benign	0.06
R0112:Brd1	UTSW	15	88,614,586 (GRCm39)	missense	probably benign
R0165:Brd1	UTSW	15	88,613,980 (GRCm39)	missense	probably damaging	0.99
R0965:Brd1	UTSW	15	88,601,231 (GRCm39)	missense	probably damaging	1.00
R1195:Brd1	UTSW	15	88,585,014 (GRCm39)	missense	probably benign	0.12
R1195:Brd1	UTSW	15	88,585,014 (GRCm39)	missense	probably benign	0.12
R1195:Brd1	UTSW	15	88,585,014 (GRCm39)	missense	probably benign	0.12
R1534:Brd1	UTSW	15	88,573,866 (GRCm39)	missense	possibly damaging	0.68
R2245:Brd1	UTSW	15	88,574,063 (GRCm39)	critical splice donor site	probably null
R3611:Brd1	UTSW	15	88,585,147 (GRCm39)	missense	probably benign
R3751:Brd1	UTSW	15	88,573,821 (GRCm39)	missense	possibly damaging	0.83
R3752:Brd1	UTSW	15	88,573,821 (GRCm39)	missense	possibly damaging	0.83
R3753:Brd1	UTSW	15	88,573,821 (GRCm39)	missense	possibly damaging	0.83
R3801:Brd1	UTSW	15	88,601,243 (GRCm39)	missense	probably damaging	1.00
R4956:Brd1	UTSW	15	88,614,316 (GRCm39)	missense	probably damaging	1.00
R5382:Brd1	UTSW	15	88,613,767 (GRCm39)	missense	probably damaging	1.00
R5546:Brd1	UTSW	15	88,585,325 (GRCm39)	missense	probably benign	0.00
R5659:Brd1	UTSW	15	88,597,584 (GRCm39)	missense	probably benign	0.14
R5730:Brd1	UTSW	15	88,601,248 (GRCm39)	missense	probably benign	0.05
R6224:Brd1	UTSW	15	88,572,558 (GRCm39)	missense	possibly damaging	0.47
R6371:Brd1	UTSW	15	88,598,201 (GRCm39)	missense	probably benign
R7096:Brd1	UTSW	15	88,598,138 (GRCm39)	missense	probably damaging	1.00
R7722:Brd1	UTSW	15	88,613,762 (GRCm39)	missense	probably damaging	1.00
R8782:Brd1	UTSW	15	88,614,834 (GRCm39)	nonsense	probably null
R8869:Brd1	UTSW	15	88,614,729 (GRCm39)	missense	probably benign	0.09
R9079:Brd1	UTSW	15	88,598,153 (GRCm39)	missense	probably damaging	1.00
R9116:Brd1	UTSW	15	88,585,374 (GRCm39)	missense	possibly damaging	0.96
R9351:Brd1	UTSW	15	88,614,307 (GRCm39)	missense	possibly damaging	0.91

Predicted Primers

PCR Primer
(F):5'- TCATTAGGCAGCAGCAGACAAG -3'
(R):5'- CTCTGCTGCCAAAGGTGTATG -3'

Sequencing Primer
(F):5'- CAGCAGCAGACAAGGACCAG -3'
(R):5'- ATGGCTGTGAGCTTAGAAGGCTC -3'

Posted On

2016-11-21