Mutagenetix > Incidental Mutation

Incidental Mutation 'R5778:Caprin2'

446812

Institutional Source

Beutler Lab

Gene Symbol

Caprin2

Ensembl Gene

ENSMUSG00000030309

Gene Name

caprin family member 2

Synonyms

RNG140, C1qdc1, Eeg1

MMRRC Submission

043376-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R5778 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

148743990-148797735 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 148770820 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Arginine at position 391 (S391R)

Ref Sequence

ENSEMBL: ENSMUSP00000107195 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000072324] [ENSMUST00000111569]

AlphaFold

Q05A80

Predicted Effect

probably benign
Transcript: ENSMUST00000072324

SMART Domains

Protein: ENSMUSP00000072165
Gene: ENSMUSG00000030309

Domain	Start	End	E-Value	Type
coiled coil region	48	125	N/A	INTRINSIC
coiled coil region	239	264	N/A	INTRINSIC
Pfam:Caprin-1_C	317	618	1.2e-32	PFAM
C1Q	676	812	1.27e-35	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000111569
AA Change: S391R

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000107195
Gene: ENSMUSG00000030309
AA Change: S391R

Domain	Start	End	E-Value	Type
coiled coil region	48	125	N/A	INTRINSIC
coiled coil region	239	264	N/A	INTRINSIC
low complexity region	330	344	N/A	INTRINSIC
Pfam:Caprin-1_C	536	836	2.9e-106	PFAM
C1Q	895	1031	1.27e-35	SMART

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.5%
20x: 95.9%

Validation Efficiency

MGI Phenotype

FUNCTION: This gene encodes a member of the caprin family. The encoded protein may function as an RNA-binding protein that induces the formation of RNA granules and plays an important role in brain function. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2014]

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acta1	A	G	8: 124,618,864 (GRCm39)	S340P	probably benign	Het
Anpep	T	C	7: 79,486,139 (GRCm39)	T528A	probably benign	Het
Apob	T	A	12: 8,065,074 (GRCm39)	D4014E	probably benign	Het
Atp23	A	G	10: 126,735,451 (GRCm39)	C78R	probably damaging	Het
Atp8b3	A	G	10: 80,356,007 (GRCm39)	F1235S	probably benign	Het
B3gnt3	T	C	8: 72,145,582 (GRCm39)	D262G	probably benign	Het
Bltp1	A	T	3: 37,012,863 (GRCm39)	I1848F	probably damaging	Het
Brca1	G	A	11: 101,416,127 (GRCm39)	A669V	possibly damaging	Het
Cdh15	G	A	8: 123,583,326 (GRCm39)	R43Q	possibly damaging	Het
Celsr1	A	T	15: 85,917,156 (GRCm39)	N272K	probably damaging	Het
Cryzl2	T	G	1: 157,298,357 (GRCm39)	S249A	probably benign	Het
Dsg1b	A	T	18: 20,542,279 (GRCm39)	T929S	possibly damaging	Het
Dusp16	G	T	6: 134,695,277 (GRCm39)	T518N	probably benign	Het
Eno2	A	T	6: 124,743,261 (GRCm39)	H158Q	probably damaging	Het
Ep400	T	C	5: 110,867,450 (GRCm39)	D954G	unknown	Het
Erg28	T	C	12: 85,866,254 (GRCm39)	T75A	possibly damaging	Het
Fam135b	T	A	15: 71,350,881 (GRCm39)	T332S	probably damaging	Het
Fam221b	A	G	4: 43,660,683 (GRCm39)	F357L	probably damaging	Het
Fcgr2b	C	T	1: 170,790,957 (GRCm39)	G279R	probably damaging	Het
Fryl	A	T	5: 73,230,121 (GRCm39)	L1679M	probably damaging	Het
Galm	T	A	17: 80,435,146 (GRCm39)	M1K	probably null	Het
Gsg1	A	T	6: 135,221,348 (GRCm39)	I17N	possibly damaging	Het
Hif3a	A	T	7: 16,785,909 (GRCm39)	I129N	probably damaging	Het
Ighv1-11	A	T	12: 114,576,051 (GRCm39)	W55R	probably damaging	Het
Ighv1-20	C	A	12: 114,687,497 (GRCm39)	K82N	probably benign	Het
Igsf21	C	T	4: 139,764,832 (GRCm39)	E148K	probably benign	Het
Il22b	C	A	10: 118,130,768 (GRCm39)	E43*	probably null	Het
Klhdc7b	A	T	15: 89,271,523 (GRCm39)	R802W	probably damaging	Het
Krt8	T	C	15: 101,912,374 (GRCm39)	I101V	probably damaging	Het
Lrrc7	A	G	3: 157,876,380 (GRCm39)	L570P	probably damaging	Het
Map4k1	C	G	7: 28,693,646 (GRCm39)	N412K	probably benign	Het
Metrnl	A	T	11: 121,605,564 (GRCm39)	I118F	possibly damaging	Het
Mmp12	T	A	9: 7,350,106 (GRCm39)	D202E	probably damaging	Het
Mpp2	A	T	11: 101,955,269 (GRCm39)	S119T	probably benign	Het
Ncoa6	T	C	2: 155,248,688 (GRCm39)	T1539A	probably benign	Het
Nlrc5	A	G	8: 95,206,154 (GRCm39)	T715A	possibly damaging	Het
Nsd1	T	A	13: 55,454,792 (GRCm39)	N1963K	probably damaging	Het
Nsd3	T	C	8: 26,149,834 (GRCm39)	Y340H	probably damaging	Het
Nwd1	T	A	8: 73,419,745 (GRCm39)	S977T	probably damaging	Het
Or5d39	T	A	2: 87,979,961 (GRCm39)	Y134F	probably damaging	Het
Or7d10	G	T	9: 19,832,337 (GRCm39)	M277I	probably benign	Het
Pcdh8	T	C	14: 80,008,197 (GRCm39)	E122G	probably damaging	Het
Pcmtd2	A	C	2: 181,496,991 (GRCm39)	T323P	probably benign	Het
Pign	C	A	1: 105,519,447 (GRCm39)	G492C	probably damaging	Het
Plppr3	A	G	10: 79,702,337 (GRCm39)	V245A	possibly damaging	Het
Prl7a2	C	T	13: 27,844,983 (GRCm39)	W134*	probably null	Het
Prom1	A	T	5: 44,164,389 (GRCm39)	N722K	probably benign	Het
Rasal2	A	T	1: 156,988,860 (GRCm39)	N663K	probably damaging	Het
Rgl1	G	T	1: 152,428,172 (GRCm39)	H315Q	probably benign	Het
Smpdl3a	C	A	10: 57,677,097 (GRCm39)	A65E	probably damaging	Het
Spdye4b	G	A	5: 143,188,142 (GRCm39)	D212N	probably damaging	Het
Tafa3	T	A	3: 104,679,505 (GRCm39)	K126N	probably damaging	Het
Tanc1	G	T	2: 59,529,691 (GRCm39)		probably null	Het
Trio	A	G	15: 27,856,250 (GRCm39)	V706A	probably benign	Het
Tshz1	T	A	18: 84,033,805 (GRCm39)	Q201L	probably damaging	Het
Ubqln1	C	T	13: 58,331,131 (GRCm39)	M365I	probably benign	Het
Usp42	A	T	5: 143,705,331 (GRCm39)	Y383N	probably damaging	Het
Vmn1r189	A	G	13: 22,286,552 (GRCm39)	I95T	probably damaging	Het
Vmn2r49	A	T	7: 9,710,274 (GRCm39)	S819R	probably damaging	Het

Other mutations in Caprin2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00236:Caprin2	APN	6	148,744,569 (GRCm39)	missense	probably damaging	1.00
IGL01364:Caprin2	APN	6	148,774,526 (GRCm39)	missense	probably benign	0.00
IGL02738:Caprin2	APN	6	148,744,360 (GRCm39)	missense	probably damaging	1.00
IGL02819:Caprin2	APN	6	148,749,756 (GRCm39)	missense	probably damaging	0.99
IGL03117:Caprin2	APN	6	148,763,964 (GRCm39)	missense	possibly damaging	0.91
IGL03123:Caprin2	APN	6	148,796,505 (GRCm39)	missense	probably damaging	1.00
IGL03378:Caprin2	APN	6	148,779,352 (GRCm39)	missense	probably benign	0.23
R0242:Caprin2	UTSW	6	148,744,452 (GRCm39)	missense	probably damaging	1.00
R0242:Caprin2	UTSW	6	148,744,452 (GRCm39)	missense	probably damaging	1.00
R0621:Caprin2	UTSW	6	148,760,176 (GRCm39)	missense	possibly damaging	0.94
R0930:Caprin2	UTSW	6	148,785,009 (GRCm39)	splice site	probably null
R1540:Caprin2	UTSW	6	148,777,969 (GRCm39)	missense	probably benign	0.01
R1591:Caprin2	UTSW	6	148,774,606 (GRCm39)	missense	possibly damaging	0.94
R1763:Caprin2	UTSW	6	148,744,619 (GRCm39)	missense	probably damaging	1.00
R1885:Caprin2	UTSW	6	148,779,383 (GRCm39)	splice site	probably null
R2027:Caprin2	UTSW	6	148,779,385 (GRCm39)	missense	probably damaging	0.98
R2867:Caprin2	UTSW	6	148,747,738 (GRCm39)	synonymous	silent
R4856:Caprin2	UTSW	6	148,774,509 (GRCm39)	missense	probably benign	0.19
R5580:Caprin2	UTSW	6	148,760,232 (GRCm39)	missense	possibly damaging	0.79
R5696:Caprin2	UTSW	6	148,779,316 (GRCm39)	missense	possibly damaging	0.49
R5765:Caprin2	UTSW	6	148,744,666 (GRCm39)	missense	probably damaging	1.00
R5961:Caprin2	UTSW	6	148,765,038 (GRCm39)	missense	probably damaging	1.00
R6255:Caprin2	UTSW	6	148,779,390 (GRCm39)	missense	probably benign	0.28
R6440:Caprin2	UTSW	6	148,771,143 (GRCm39)	missense	probably damaging	1.00
R6997:Caprin2	UTSW	6	148,779,474 (GRCm39)	missense	probably damaging	1.00
R7034:Caprin2	UTSW	6	148,749,703 (GRCm39)	missense	possibly damaging	0.64
R7344:Caprin2	UTSW	6	148,774,565 (GRCm39)	missense	probably benign	0.02
R7632:Caprin2	UTSW	6	148,784,954 (GRCm39)	missense	probably damaging	1.00
R7808:Caprin2	UTSW	6	148,744,528 (GRCm39)	missense	probably damaging	1.00
R8075:Caprin2	UTSW	6	148,770,590 (GRCm39)	missense	probably benign	0.03
R8083:Caprin2	UTSW	6	148,744,346 (GRCm39)	nonsense	probably null
R8128:Caprin2	UTSW	6	148,784,940 (GRCm39)	splice site	probably null
R8393:Caprin2	UTSW	6	148,770,650 (GRCm39)	missense	probably benign	0.01
R8839:Caprin2	UTSW	6	148,774,525 (GRCm39)	missense	probably benign	0.00
R9041:Caprin2	UTSW	6	148,771,030 (GRCm39)	missense	probably benign	0.03
R9188:Caprin2	UTSW	6	148,767,422 (GRCm39)	missense	probably benign
R9234:Caprin2	UTSW	6	148,744,337 (GRCm39)	nonsense	probably null
R9587:Caprin2	UTSW	6	148,770,500 (GRCm39)	missense	probably benign
R9605:Caprin2	UTSW	6	148,744,332 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CTGAAGCCTGTTCTCTGCAC -3'
(R):5'- AGTCTCCTCAAATGCTGGAATAC -3'

Sequencing Primer
(F):5'- AGCCTGTTCTCTGCACACAGG -3'
(R):5'- ACTTCCAGAGCCAGATGGTCAG -3'

Posted On

2016-12-15