Incidental Mutation 'R5790:C6'
ID |
448299 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
C6
|
Ensembl Gene |
ENSMUSG00000022181 |
Gene Name |
complement component 6 |
Synonyms |
|
MMRRC Submission |
043384-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.107)
|
Stock # |
R5790 (G1)
|
Quality Score |
225 |
Status
|
Validated
|
Chromosome |
15 |
Chromosomal Location |
4756550-4833527 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to A
at 4792968 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Phenylalanine to Isoleucine
at position 358
(F358I)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000124417
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000022788]
[ENSMUST00000161997]
[ENSMUST00000162350]
[ENSMUST00000162585]
|
AlphaFold |
E9Q6D8 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000022788
AA Change: F358I
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000022788 Gene: ENSMUSG00000022181 AA Change: F358I
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
21 |
N/A |
INTRINSIC |
TSP1
|
26 |
79 |
1.68e-11 |
SMART |
TSP1
|
84 |
134 |
1.05e-3 |
SMART |
LDLa
|
139 |
175 |
1.46e-11 |
SMART |
MACPF
|
312 |
516 |
1.89e-59 |
SMART |
TSP1
|
568 |
617 |
3.9e-7 |
SMART |
CCP
|
644 |
699 |
1.21e-9 |
SMART |
CCP
|
704 |
761 |
3.56e-7 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000161997
|
SMART Domains |
Protein: ENSMUSP00000125358 Gene: ENSMUSG00000022181
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
21 |
N/A |
INTRINSIC |
TSP1
|
26 |
79 |
1.68e-11 |
SMART |
TSP1
|
84 |
134 |
1.05e-3 |
SMART |
LDLa
|
139 |
175 |
1.46e-11 |
SMART |
Blast:TSP1
|
197 |
223 |
3e-9 |
BLAST |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000162350
AA Change: F358I
PolyPhen 2
Score 0.174 (Sensitivity: 0.92; Specificity: 0.87)
|
SMART Domains |
Protein: ENSMUSP00000125693 Gene: ENSMUSG00000022181 AA Change: F358I
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
21 |
N/A |
INTRINSIC |
TSP1
|
26 |
79 |
1.68e-11 |
SMART |
TSP1
|
84 |
134 |
1.05e-3 |
SMART |
LDLa
|
139 |
175 |
1.46e-11 |
SMART |
MACPF
|
312 |
516 |
1.89e-59 |
SMART |
TSP1
|
568 |
617 |
3.9e-7 |
SMART |
CCP
|
644 |
699 |
1.21e-9 |
SMART |
CCP
|
704 |
761 |
3.56e-7 |
SMART |
Blast:FIMAC
|
859 |
931 |
1e-36 |
BLAST |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000162585
AA Change: F358I
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000124417 Gene: ENSMUSG00000022181 AA Change: F358I
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
21 |
N/A |
INTRINSIC |
TSP1
|
26 |
79 |
1.68e-11 |
SMART |
TSP1
|
84 |
134 |
1.05e-3 |
SMART |
LDLa
|
139 |
175 |
1.46e-11 |
SMART |
MACPF
|
312 |
516 |
1.89e-59 |
SMART |
TSP1
|
568 |
617 |
3.9e-7 |
SMART |
CCP
|
644 |
699 |
1.21e-9 |
SMART |
CCP
|
704 |
761 |
3.56e-7 |
SMART |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000162729
|
Meta Mutation Damage Score |
0.4185 |
Coding Region Coverage |
- 1x: 99.3%
- 3x: 98.7%
- 10x: 97.4%
- 20x: 95.5%
|
Validation Efficiency |
99% (73/74) |
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a component of the complement cascade. The encoded protein is part of the membrane attack complex that can be incorporated into the cell membrane and cause cell lysis. Mutations in this gene are associated with complement component-6 deficiency. Transcript variants encoding the same protein have been described.[provided by RefSeq, Nov 2012] PHENOTYPE: Mice homozygous for a spontaneous mutation exhibit decreased susceptibility to ischemia reperfusion-induced renal injury. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 70 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Agbl5 |
A |
T |
5: 31,051,702 (GRCm39) |
R633* |
probably null |
Het |
Ahnak |
T |
C |
19: 8,992,612 (GRCm39) |
V4632A |
probably damaging |
Het |
Asap1 |
T |
A |
15: 63,966,114 (GRCm39) |
D997V |
probably damaging |
Het |
Atad2 |
T |
C |
15: 57,989,990 (GRCm39) |
Y162C |
probably damaging |
Het |
Atp2b2 |
G |
T |
6: 113,736,270 (GRCm39) |
S936R |
probably damaging |
Het |
Bcl11a |
T |
A |
11: 24,113,650 (GRCm39) |
L331Q |
probably damaging |
Het |
Capn15 |
C |
T |
17: 26,183,521 (GRCm39) |
S386N |
probably benign |
Het |
Ccdc66 |
G |
A |
14: 27,222,404 (GRCm39) |
T113I |
possibly damaging |
Het |
Cd200 |
G |
T |
16: 45,217,621 (GRCm39) |
H23Q |
possibly damaging |
Het |
Cdh17 |
A |
G |
4: 11,814,945 (GRCm39) |
|
probably null |
Het |
Ces2b |
C |
T |
8: 105,560,568 (GRCm39) |
P128S |
probably damaging |
Het |
Ces3b |
A |
T |
8: 105,819,270 (GRCm39) |
Q442L |
probably damaging |
Het |
Chil4 |
T |
C |
3: 106,109,894 (GRCm39) |
H373R |
probably benign |
Het |
Ciapin1 |
C |
A |
8: 95,551,811 (GRCm39) |
|
probably benign |
Het |
Cnot10 |
A |
C |
9: 114,454,985 (GRCm39) |
|
probably null |
Het |
Cpq |
A |
G |
15: 33,250,143 (GRCm39) |
K167E |
probably damaging |
Het |
Dennd4b |
T |
A |
3: 90,184,757 (GRCm39) |
D1118E |
probably damaging |
Het |
Dnah8 |
T |
A |
17: 31,093,978 (GRCm39) |
C4691S |
probably damaging |
Het |
Dnajc1 |
A |
G |
2: 18,311,898 (GRCm39) |
|
probably benign |
Het |
Dnhd1 |
G |
A |
7: 105,304,981 (GRCm39) |
R341H |
probably damaging |
Het |
Dock10 |
G |
T |
1: 80,482,887 (GRCm39) |
T2145K |
probably benign |
Het |
Eif3b |
T |
C |
5: 140,427,886 (GRCm39) |
V736A |
probably benign |
Het |
Eno1 |
G |
T |
4: 150,329,710 (GRCm39) |
V195L |
probably benign |
Het |
Ewsr1 |
C |
T |
11: 5,032,263 (GRCm39) |
|
probably benign |
Het |
Fbn2 |
T |
C |
18: 58,209,768 (GRCm39) |
T1038A |
probably benign |
Het |
Gabrb1 |
T |
C |
5: 72,293,827 (GRCm39) |
I367T |
possibly damaging |
Het |
Gigyf1 |
C |
T |
5: 137,522,517 (GRCm39) |
|
probably benign |
Het |
Glp2r |
T |
A |
11: 67,655,625 (GRCm39) |
Y39F |
probably damaging |
Het |
Gm10036 |
T |
A |
18: 15,966,243 (GRCm39) |
Y131* |
probably null |
Het |
Gm38706 |
T |
C |
6: 130,461,961 (GRCm39) |
|
noncoding transcript |
Het |
Gna15 |
G |
A |
10: 81,345,218 (GRCm39) |
R216C |
probably damaging |
Het |
Grin3a |
A |
G |
4: 49,792,717 (GRCm39) |
F339L |
probably damaging |
Het |
Grk3 |
T |
G |
5: 113,114,842 (GRCm39) |
K126T |
possibly damaging |
Het |
Hspa1l |
T |
C |
17: 35,196,216 (GRCm39) |
V85A |
probably benign |
Het |
Iqsec1 |
A |
T |
6: 90,666,862 (GRCm39) |
L525* |
probably null |
Het |
Irx3 |
T |
C |
8: 92,526,304 (GRCm39) |
T467A |
probably benign |
Het |
Itga2 |
G |
A |
13: 115,004,742 (GRCm39) |
T530I |
probably benign |
Het |
Lonp2 |
T |
C |
8: 87,358,118 (GRCm39) |
V113A |
probably benign |
Het |
Msx3 |
C |
T |
7: 139,628,866 (GRCm39) |
R16H |
possibly damaging |
Het |
Nek3 |
C |
A |
8: 22,621,313 (GRCm39) |
Q405H |
probably damaging |
Het |
Nek3 |
T |
A |
8: 22,621,314 (GRCm39) |
Q403L |
probably damaging |
Het |
Or2b6 |
T |
C |
13: 21,823,046 (GRCm39) |
T216A |
probably benign |
Het |
Or6c66 |
A |
G |
10: 129,461,757 (GRCm39) |
Y58H |
probably damaging |
Het |
P4ha1 |
A |
G |
10: 59,190,184 (GRCm39) |
N367S |
probably benign |
Het |
Padi6 |
C |
A |
4: 140,459,569 (GRCm39) |
G429C |
probably damaging |
Het |
Pidd1 |
T |
C |
7: 141,021,305 (GRCm39) |
|
probably benign |
Het |
Plekhg5 |
T |
C |
4: 152,198,392 (GRCm39) |
V847A |
probably benign |
Het |
Polr3e |
A |
G |
7: 120,527,190 (GRCm39) |
D56G |
probably damaging |
Het |
Pomt2 |
T |
G |
12: 87,174,152 (GRCm39) |
N347T |
probably damaging |
Het |
Ppp1r9a |
T |
C |
6: 5,134,363 (GRCm39) |
|
probably benign |
Het |
Rbm33 |
A |
T |
5: 28,544,296 (GRCm39) |
D184V |
probably damaging |
Het |
Rims2 |
A |
T |
15: 39,544,441 (GRCm39) |
T1431S |
probably damaging |
Het |
Saal1 |
T |
C |
7: 46,351,352 (GRCm39) |
D208G |
probably damaging |
Het |
Sis |
T |
C |
3: 72,835,507 (GRCm39) |
I952V |
probably benign |
Het |
Slc30a1 |
T |
A |
1: 191,640,997 (GRCm39) |
D214E |
probably benign |
Het |
Slc30a8 |
T |
C |
15: 52,197,043 (GRCm39) |
V318A |
possibly damaging |
Het |
Smarca2 |
A |
G |
19: 26,654,124 (GRCm39) |
T770A |
probably damaging |
Het |
Sptbn4 |
T |
A |
7: 27,065,853 (GRCm39) |
H2031L |
probably damaging |
Het |
Ssbp1 |
A |
G |
6: 40,457,804 (GRCm39) |
S141G |
probably benign |
Het |
Tgm4 |
A |
G |
9: 122,890,808 (GRCm39) |
E45G |
probably damaging |
Het |
Thra |
T |
A |
11: 98,653,777 (GRCm39) |
S203T |
probably benign |
Het |
Tle2 |
T |
C |
10: 81,426,149 (GRCm39) |
Y763H |
probably damaging |
Het |
Tmem141 |
T |
A |
2: 25,511,087 (GRCm39) |
I102L |
probably benign |
Het |
Tmem63c |
C |
T |
12: 87,104,410 (GRCm39) |
T77I |
probably benign |
Het |
Tspo2 |
C |
A |
17: 48,756,047 (GRCm39) |
|
probably null |
Het |
Ttc19 |
T |
A |
11: 62,172,340 (GRCm39) |
M1K |
probably null |
Het |
Ucp1 |
A |
G |
8: 84,024,520 (GRCm39) |
N282D |
possibly damaging |
Het |
Vmn1r33 |
A |
T |
6: 66,589,198 (GRCm39) |
F119I |
probably benign |
Het |
Vmn2r24 |
A |
T |
6: 123,792,499 (GRCm39) |
M609L |
probably benign |
Het |
Vwc2l |
A |
T |
1: 70,790,142 (GRCm39) |
H146L |
probably damaging |
Het |
|
Other mutations in C6 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00417:C6
|
APN |
15 |
4,789,449 (GRCm39) |
missense |
possibly damaging |
0.53 |
IGL00918:C6
|
APN |
15 |
4,764,739 (GRCm39) |
missense |
possibly damaging |
0.90 |
IGL01615:C6
|
APN |
15 |
4,811,378 (GRCm39) |
missense |
probably benign |
0.00 |
IGL01637:C6
|
APN |
15 |
4,789,399 (GRCm39) |
missense |
possibly damaging |
0.69 |
IGL01662:C6
|
APN |
15 |
4,822,236 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02293:C6
|
APN |
15 |
4,784,785 (GRCm39) |
missense |
probably benign |
0.01 |
IGL02431:C6
|
APN |
15 |
4,789,343 (GRCm39) |
nonsense |
probably null |
|
IGL02568:C6
|
APN |
15 |
4,820,646 (GRCm39) |
nonsense |
probably null |
|
IGL02688:C6
|
APN |
15 |
4,827,802 (GRCm39) |
missense |
probably benign |
0.00 |
IGL02737:C6
|
APN |
15 |
4,826,396 (GRCm39) |
missense |
probably benign |
0.30 |
R0195:C6
|
UTSW |
15 |
4,792,953 (GRCm39) |
missense |
probably benign |
0.01 |
R0334:C6
|
UTSW |
15 |
4,784,849 (GRCm39) |
missense |
probably benign |
0.24 |
R0879:C6
|
UTSW |
15 |
4,792,818 (GRCm39) |
splice site |
probably benign |
|
R0940:C6
|
UTSW |
15 |
4,764,717 (GRCm39) |
missense |
probably benign |
0.12 |
R1342:C6
|
UTSW |
15 |
4,769,231 (GRCm39) |
splice site |
probably benign |
|
R1649:C6
|
UTSW |
15 |
4,764,739 (GRCm39) |
missense |
possibly damaging |
0.90 |
R1709:C6
|
UTSW |
15 |
4,820,452 (GRCm39) |
missense |
probably benign |
0.34 |
R1967:C6
|
UTSW |
15 |
4,789,302 (GRCm39) |
missense |
probably damaging |
0.99 |
R2068:C6
|
UTSW |
15 |
4,820,552 (GRCm39) |
missense |
probably damaging |
1.00 |
R3056:C6
|
UTSW |
15 |
4,769,355 (GRCm39) |
missense |
probably damaging |
0.99 |
R3791:C6
|
UTSW |
15 |
4,764,717 (GRCm39) |
missense |
probably benign |
0.00 |
R3821:C6
|
UTSW |
15 |
4,819,066 (GRCm39) |
missense |
probably benign |
0.23 |
R3895:C6
|
UTSW |
15 |
4,837,952 (GRCm39) |
missense |
probably benign |
0.00 |
R4178:C6
|
UTSW |
15 |
4,764,621 (GRCm39) |
missense |
probably benign |
0.02 |
R4440:C6
|
UTSW |
15 |
4,764,733 (GRCm39) |
missense |
possibly damaging |
0.90 |
R4598:C6
|
UTSW |
15 |
4,792,852 (GRCm39) |
missense |
possibly damaging |
0.55 |
R4632:C6
|
UTSW |
15 |
4,789,350 (GRCm39) |
missense |
probably benign |
0.01 |
R4756:C6
|
UTSW |
15 |
4,811,394 (GRCm39) |
missense |
probably benign |
|
R4879:C6
|
UTSW |
15 |
4,833,129 (GRCm39) |
splice site |
probably null |
|
R5452:C6
|
UTSW |
15 |
4,844,311 (GRCm39) |
missense |
possibly damaging |
0.51 |
R5538:C6
|
UTSW |
15 |
4,844,311 (GRCm39) |
missense |
possibly damaging |
0.84 |
R5547:C6
|
UTSW |
15 |
4,837,970 (GRCm39) |
missense |
probably benign |
0.00 |
R5862:C6
|
UTSW |
15 |
4,764,745 (GRCm39) |
missense |
possibly damaging |
0.66 |
R5946:C6
|
UTSW |
15 |
4,837,996 (GRCm39) |
missense |
possibly damaging |
0.96 |
R6049:C6
|
UTSW |
15 |
4,764,654 (GRCm39) |
missense |
probably damaging |
1.00 |
R6247:C6
|
UTSW |
15 |
4,793,023 (GRCm39) |
missense |
probably damaging |
1.00 |
R6438:C6
|
UTSW |
15 |
4,826,465 (GRCm39) |
missense |
possibly damaging |
0.94 |
R6873:C6
|
UTSW |
15 |
4,820,461 (GRCm39) |
missense |
probably benign |
0.03 |
R7052:C6
|
UTSW |
15 |
4,763,177 (GRCm39) |
missense |
probably damaging |
0.97 |
R7302:C6
|
UTSW |
15 |
4,826,432 (GRCm39) |
missense |
probably damaging |
1.00 |
R7361:C6
|
UTSW |
15 |
4,826,404 (GRCm39) |
nonsense |
probably null |
|
R7481:C6
|
UTSW |
15 |
4,844,357 (GRCm39) |
missense |
|
|
R7492:C6
|
UTSW |
15 |
4,761,196 (GRCm39) |
missense |
probably benign |
0.00 |
R7498:C6
|
UTSW |
15 |
4,792,846 (GRCm39) |
missense |
probably damaging |
1.00 |
R7569:C6
|
UTSW |
15 |
4,819,063 (GRCm39) |
missense |
probably benign |
0.01 |
R7653:C6
|
UTSW |
15 |
4,844,244 (GRCm39) |
missense |
|
|
R7666:C6
|
UTSW |
15 |
4,818,987 (GRCm39) |
missense |
probably damaging |
0.99 |
R7843:C6
|
UTSW |
15 |
4,837,886 (GRCm39) |
missense |
|
|
R8073:C6
|
UTSW |
15 |
4,764,675 (GRCm39) |
missense |
probably benign |
0.30 |
R8784:C6
|
UTSW |
15 |
4,822,622 (GRCm39) |
missense |
probably damaging |
1.00 |
R8814:C6
|
UTSW |
15 |
4,822,266 (GRCm39) |
missense |
probably benign |
0.00 |
R8825:C6
|
UTSW |
15 |
4,761,170 (GRCm39) |
missense |
possibly damaging |
0.79 |
R8878:C6
|
UTSW |
15 |
4,826,454 (GRCm39) |
missense |
probably benign |
0.30 |
R8987:C6
|
UTSW |
15 |
4,844,344 (GRCm39) |
missense |
|
|
R9088:C6
|
UTSW |
15 |
4,792,956 (GRCm39) |
missense |
probably damaging |
1.00 |
R9216:C6
|
UTSW |
15 |
4,820,465 (GRCm39) |
missense |
probably damaging |
1.00 |
R9253:C6
|
UTSW |
15 |
4,764,679 (GRCm39) |
missense |
probably benign |
0.00 |
R9288:C6
|
UTSW |
15 |
4,835,532 (GRCm39) |
missense |
|
|
R9517:C6
|
UTSW |
15 |
4,827,914 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Predicted Primers |
PCR Primer
(F):5'- GCCTGAAGACTGCATGTATGG -3'
(R):5'- GCACTTTTGGGATAGCATTGGAAATG -3'
Sequencing Primer
(F):5'- CTGCAGTAGGAATGGGGCTAATG -3'
(R):5'- TGGGATAGCATTGGAAATGTAATTG -3'
|
Posted On |
2016-12-15 |