Incidental Mutation 'R5837:Atf1'
ID449672
Institutional Source Beutler Lab
Gene Symbol Atf1
Ensembl Gene ENSMUSG00000023027
Gene Nameactivating transcription factor 1
Synonyms
MMRRC Submission 044057-MU
Accession Numbers
Is this an essential gene? Non essential (E-score: 0.000) question?
Stock #R5837 (G1)
Quality Score225
Status Validated
Chromosome15
Chromosomal Location100227819-100261244 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) T to A at 100254384 bp
ZygosityHeterozygous
Amino Acid Change Isoleucine to Asparagine at position 86 (I86N)
Ref Sequence ENSEMBL: ENSMUSP00000126491 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000023769] [ENSMUST00000163855] [ENSMUST00000165804] [ENSMUST00000168103] [ENSMUST00000169408] [ENSMUST00000171869] [ENSMUST00000172154]
Predicted Effect probably damaging
Transcript: ENSMUST00000023769
AA Change: I179N

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000023769
Gene: ENSMUSG00000023027
AA Change: I179N

DomainStartEndE-ValueType
Pfam:pKID 43 83 3.9e-21 PFAM
BRLZ 209 266 3.28e-10 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000163855
AA Change: I86N

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
Predicted Effect probably benign
Transcript: ENSMUST00000165804
SMART Domains Protein: ENSMUSP00000127969
Gene: ENSMUSG00000023027

DomainStartEndE-ValueType
Pfam:pKID 46 76 1.9e-19 PFAM
Predicted Effect unknown
Transcript: ENSMUST00000166435
AA Change: I30N
SMART Domains Protein: ENSMUSP00000127985
Gene: ENSMUSG00000023027
AA Change: I30N

DomainStartEndE-ValueType
low complexity region 76 92 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000168103
Predicted Effect probably benign
Transcript: ENSMUST00000169408
Predicted Effect probably benign
Transcript: ENSMUST00000171869
SMART Domains Protein: ENSMUSP00000131278
Gene: ENSMUSG00000023027

DomainStartEndE-ValueType
Pfam:pKID 43 67 5.2e-12 PFAM
Predicted Effect silent
Transcript: ENSMUST00000172154
SMART Domains Protein: ENSMUSP00000132907
Gene: ENSMUSG00000023027

DomainStartEndE-ValueType
Pfam:pKID 43 83 2.5e-20 PFAM
Meta Mutation Damage Score 0.374 question?
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.7%
  • 10x: 98.7%
  • 20x: 96.6%
Validation Efficiency 99% (72/73)
MGI Phenotype PHENOTYPE: Homozygous mutation of this gene does not result in a phenotype. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 65 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca2 G A 2: 25,433,359 R113Q probably benign Het
Ank1 A G 8: 23,104,790 N605D probably damaging Het
Apob A G 12: 8,003,277 M1240V probably benign Het
Best1 T A 19: 9,989,119 probably null Het
Bet1l C A 7: 140,854,781 R51L probably benign Het
Bpifa5 A G 2: 154,163,678 Y60C probably damaging Het
Ccdc141 G T 2: 77,108,437 Q275K possibly damaging Het
Cep295 T A 9: 15,346,984 H241L probably damaging Het
Commd7 A G 2: 153,629,224 V36A possibly damaging Het
Cyld G A 8: 88,741,404 S555N probably damaging Het
Cyp2j13 A T 4: 96,071,682 I79N probably damaging Het
Dact2 A G 17: 14,196,253 S562P probably damaging Het
Diexf A T 1: 193,118,393 F373Y probably damaging Het
Dnajc13 T A 9: 104,176,666 I1664F possibly damaging Het
Ehmt1 A G 2: 24,863,914 V277A probably damaging Het
Fbn1 A T 2: 125,379,134 probably null Het
Galnt6 G A 15: 100,694,646 T560M possibly damaging Het
Glra1 G T 11: 55,536,507 probably null Het
Gm10762 C T 2: 128,967,157 probably benign Het
Greb1 C T 12: 16,688,585 R1459H probably damaging Het
Ift140 A G 17: 25,089,540 K1048E probably damaging Het
Ilk T C 7: 105,741,171 probably null Het
Lgi4 C T 7: 31,070,783 probably benign Het
Loxhd1 A G 18: 77,286,409 T59A possibly damaging Het
Lzic G T 4: 149,486,000 probably null Het
Mef2d A G 3: 88,161,781 T286A probably benign Het
Mycbp2 C A 14: 103,124,403 C4447F probably damaging Het
Ncoa2 A G 1: 13,224,706 probably benign Het
Nolc1 T C 19: 46,083,183 probably benign Het
Npl T C 1: 153,503,525 T271A probably benign Het
Nudt1 A G 5: 140,334,540 R25G probably damaging Het
Nudt19 T C 7: 35,551,636 E226G possibly damaging Het
Oc90 T C 15: 65,876,446 D405G probably benign Het
Olfr1111 A T 2: 87,150,355 F102Y probably benign Het
Olfr1491 T A 19: 13,704,960 C44* probably null Het
Olfr376 A G 11: 73,375,648 M300V probably benign Het
Olfr826 A T 10: 130,180,397 L161H probably damaging Het
Pcdhb1 T C 18: 37,265,827 I277T possibly damaging Het
Pcdhb9 C A 18: 37,402,798 A615E probably damaging Het
Phrf1 C G 7: 141,260,061 D1056E probably benign Het
Phyhip C A 14: 70,467,010 A223E probably damaging Het
Polr2h T A 16: 20,717,932 I4N probably damaging Het
Ppp1r12c C A 7: 4,497,404 probably benign Het
Pramef6 A G 4: 143,896,920 V228A probably benign Het
Psg17 T A 7: 18,820,215 T37S possibly damaging Het
Ptprz1 T C 6: 23,001,418 V1169A probably benign Het
Rabgap1l T C 1: 160,307,222 probably benign Het
Rapgef3 C T 15: 97,757,342 probably benign Het
Rbp3 C A 14: 33,954,273 H59Q probably benign Het
Robo3 T A 9: 37,429,816 probably null Het
Slco4c1 C T 1: 96,818,982 E712K probably benign Het
Ssh3 T C 19: 4,266,400 T168A probably benign Het
Stoml2 G T 4: 43,028,989 N248K probably damaging Het
Tmigd1 A G 11: 76,916,085 probably benign Het
Tnc T A 4: 64,013,214 D753V probably damaging Het
Tnik A T 3: 28,668,053 probably benign Het
Treml1 A G 17: 48,360,152 S22G possibly damaging Het
Trmt2a C T 16: 18,249,462 probably benign Het
Ttn T C 2: 76,717,374 T32151A probably damaging Het
Vmn1r67 T C 7: 10,447,022 I10T probably benign Het
Vmn2r116 T C 17: 23,387,080 F322S probably damaging Het
Wdr19 A G 5: 65,202,957 D35G probably benign Het
Zfp365 A T 10: 67,889,040 H339Q probably damaging Het
Zfp677 A T 17: 21,397,386 H235L probably damaging Het
Zpbp2 G A 11: 98,551,271 probably benign Het
Other mutations in Atf1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01807:Atf1 APN 15 100252064 splice site probably benign
IGL02172:Atf1 APN 15 100254441 missense probably damaging 0.99
IGL02718:Atf1 APN 15 100254219 missense probably damaging 1.00
R0426:Atf1 UTSW 15 100232827 missense possibly damaging 0.66
R1393:Atf1 UTSW 15 100232766 missense possibly damaging 0.66
R1965:Atf1 UTSW 15 100254171 missense probably benign 0.12
R1968:Atf1 UTSW 15 100254514 critical splice donor site probably null
R4913:Atf1 UTSW 15 100252098 unclassified probably null
R6064:Atf1 UTSW 15 100252148 missense probably benign 0.24
R6230:Atf1 UTSW 15 100232824 missense possibly damaging 0.46
Predicted Primers PCR Primer
(F):5'- GCACTGCAGACATTAACCATG -3'
(R):5'- GTGGCTGAAATATTACCTACTGTGG -3'

Sequencing Primer
(F):5'- TTCAAGCAGTACTCAGCAGG -3'
(R):5'- ACCTACTGTGGAATATGCTCTC -3'
Posted On2016-12-20