Incidental Mutation 'R5713:Il2rb'
| ID |
451015 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Il2rb
|
| Ensembl Gene |
ENSMUSG00000068227 |
| Gene Name |
interleukin 2 receptor, beta chain |
| Synonyms |
IL-15Rbeta, IL-15 receptor beta chain, IL-2/15Rbeta, IL15Rbeta, Il-2Rbeta, CD122 |
| MMRRC Submission |
043335-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.086)
|
| Stock # |
R5713 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
15 |
| Chromosomal Location |
78363456-78379471 bp(-) (GRCm39) |
| Type of Mutation |
start codon destroyed |
| DNA Base Change (assembly) |
A to G
at 78376048 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Methionine to Threonine
at position 1
(M1T)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000127006
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000089398]
[ENSMUST00000163494]
|
| AlphaFold |
P16297 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000089398
AA Change: M1T
PolyPhen 2
Score 0.663 (Sensitivity: 0.86; Specificity: 0.91)
|
| SMART Domains |
Protein: ENSMUSP00000086820
Gene: ENSMUSG00000068227
AA Change: M1T
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
6 |
19 |
N/A |
INTRINSIC |
|
FN3
|
133 |
219 |
9.48e-3 |
SMART |
|
transmembrane domain
|
246 |
268 |
N/A |
INTRINSIC |
|
low complexity region
|
307 |
321 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000163494
AA Change: M1T
PolyPhen 2
Score 0.663 (Sensitivity: 0.86; Specificity: 0.91)
|
| SMART Domains |
Protein: ENSMUSP00000127006
Gene: ENSMUSG00000068227
AA Change: M1T
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
6 |
19 |
N/A |
INTRINSIC |
|
FN3
|
133 |
219 |
9.48e-3 |
SMART |
|
transmembrane domain
|
246 |
268 |
N/A |
INTRINSIC |
|
low complexity region
|
307 |
321 |
N/A |
INTRINSIC |
|
| Meta Mutation Damage Score |
0.9612 |
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.1%
- 20x: 94.9%
|
| Validation Efficiency |
98% (56/57) |
| MGI Phenotype |
FUNCTION: The interleukin 2 receptor is composed of alpha and beta subunits. The beta subunit encoded by this gene is very homologous to the human beta subunit and also shows structural similarity to other cytokine receptors. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygotes for a targeted null mutation exhibit spontaneous activation of T cells and differentiation of B cells, elevated immunoglobulins including autoantibodies causing hemolytic anemia, granulocytopoiesis, and death after 3 months of age. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 42 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abhd18 |
T |
A |
3: 40,889,414 (GRCm39) |
Y431* |
probably null |
Het |
| Abtb3 |
A |
T |
10: 85,487,516 (GRCm39) |
I995F |
probably damaging |
Het |
| Aqp7 |
G |
A |
4: 41,035,510 (GRCm39) |
T115I |
probably benign |
Het |
| Arid1b |
C |
A |
17: 5,387,091 (GRCm39) |
R1515S |
probably damaging |
Het |
| Atp5mc3 |
A |
G |
2: 73,739,651 (GRCm39) |
V63A |
probably benign |
Het |
| Bmp6 |
C |
T |
13: 38,682,928 (GRCm39) |
P473S |
probably damaging |
Het |
| Casp3 |
C |
A |
8: 47,089,349 (GRCm39) |
T199K |
probably damaging |
Het |
| Ccl3 |
C |
T |
11: 83,540,066 (GRCm39) |
C13Y |
possibly damaging |
Het |
| Cdc42bpa |
T |
C |
1: 179,911,975 (GRCm39) |
S518P |
probably benign |
Het |
| Clic3 |
A |
T |
2: 25,348,179 (GRCm39) |
I109F |
probably damaging |
Het |
| Dnah9 |
T |
A |
11: 65,916,049 (GRCm39) |
D2301V |
possibly damaging |
Het |
| Gm26627 |
A |
G |
6: 29,507,850 (GRCm39) |
|
probably benign |
Het |
| Gm4887 |
A |
T |
7: 104,471,000 (GRCm39) |
|
noncoding transcript |
Het |
| Hc |
A |
C |
2: 34,903,543 (GRCm39) |
I1037S |
probably damaging |
Het |
| Ing5 |
T |
A |
1: 93,740,452 (GRCm39) |
D124E |
probably benign |
Het |
| Jak2 |
A |
G |
19: 29,248,793 (GRCm39) |
E90G |
probably damaging |
Het |
| Kalrn |
A |
T |
16: 33,836,949 (GRCm39) |
I522N |
probably benign |
Het |
| Lipa |
A |
T |
19: 34,500,832 (GRCm39) |
H71Q |
probably benign |
Het |
| Lmnb2 |
C |
T |
10: 80,741,921 (GRCm39) |
V57M |
probably damaging |
Het |
| Mllt3 |
A |
T |
4: 87,759,448 (GRCm39) |
M200K |
probably benign |
Het |
| Mtpap |
G |
A |
18: 4,396,280 (GRCm39) |
S524N |
probably benign |
Het |
| Mup21 |
C |
G |
4: 62,068,511 (GRCm39) |
E52Q |
probably damaging |
Het |
| Nasp |
A |
G |
4: 116,471,558 (GRCm39) |
F90L |
probably benign |
Het |
| Nr1d1 |
T |
C |
11: 98,661,237 (GRCm39) |
D343G |
probably benign |
Het |
| Otop2 |
T |
A |
11: 115,219,870 (GRCm39) |
F237I |
probably damaging |
Het |
| Pax4 |
A |
G |
6: 28,446,184 (GRCm39) |
I103T |
probably damaging |
Het |
| Pde4a |
T |
A |
9: 21,114,813 (GRCm39) |
S430T |
probably damaging |
Het |
| Phf20l1 |
A |
G |
15: 66,508,669 (GRCm39) |
N843D |
possibly damaging |
Het |
| Pla2g7 |
T |
A |
17: 43,905,183 (GRCm39) |
M37K |
probably benign |
Het |
| Plcb3 |
T |
C |
19: 6,935,060 (GRCm39) |
I864V |
probably damaging |
Het |
| Prr16 |
A |
G |
18: 51,435,910 (GRCm39) |
T130A |
probably damaging |
Het |
| Rbm24 |
A |
G |
13: 46,582,780 (GRCm39) |
D233G |
probably damaging |
Het |
| Rps29 |
C |
A |
12: 69,205,502 (GRCm39) |
R32L |
probably benign |
Het |
| Serpind1 |
A |
G |
16: 17,154,851 (GRCm39) |
E226G |
probably damaging |
Het |
| Siglecg |
A |
T |
7: 43,058,226 (GRCm39) |
I38F |
probably damaging |
Het |
| Slc26a8 |
T |
A |
17: 28,880,853 (GRCm39) |
M308L |
probably benign |
Het |
| Supv3l1 |
A |
G |
10: 62,266,283 (GRCm39) |
V631A |
possibly damaging |
Het |
| Tcf12 |
T |
C |
9: 71,792,545 (GRCm39) |
*58W |
probably null |
Het |
| Trgc2 |
T |
A |
13: 19,491,515 (GRCm39) |
|
probably benign |
Het |
| Usp34 |
T |
A |
11: 23,293,515 (GRCm39) |
V203E |
possibly damaging |
Het |
| Vmn2r108 |
A |
G |
17: 20,691,290 (GRCm39) |
L411P |
probably damaging |
Het |
| Zfp874a |
A |
T |
13: 67,597,476 (GRCm39) |
D42E |
probably benign |
Het |
|
| Other mutations in Il2rb |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01977:Il2rb
|
APN |
15 |
78,365,897 (GRCm39) |
missense |
probably benign |
0.00 |
|
Bonnerhall
|
UTSW |
15 |
78,369,204 (GRCm39) |
missense |
probably benign |
|
|
diptera
|
UTSW |
15 |
78,370,006 (GRCm39) |
missense |
probably damaging |
1.00 |
|
flybase
|
UTSW |
15 |
78,376,048 (GRCm39) |
start codon destroyed |
probably null |
0.66 |
|
Halfmeasure
|
UTSW |
15 |
78,370,681 (GRCm39) |
missense |
probably benign |
0.04 |
|
Moonpie
|
UTSW |
15 |
78,366,034 (GRCm39) |
frame shift |
probably null |
|
|
tetragonal
|
UTSW |
15 |
78,369,953 (GRCm39) |
missense |
probably benign |
|
|
Whistles
|
UTSW |
15 |
78,366,136 (GRCm39) |
missense |
possibly damaging |
0.72 |
|
R0581:Il2rb
|
UTSW |
15 |
78,366,136 (GRCm39) |
missense |
possibly damaging |
0.72 |
|
R1795:Il2rb
|
UTSW |
15 |
78,368,187 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1932:Il2rb
|
UTSW |
15 |
78,375,977 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R2924:Il2rb
|
UTSW |
15 |
78,376,049 (GRCm39) |
start codon destroyed |
probably null |
0.27 |
|
R4706:Il2rb
|
UTSW |
15 |
78,370,600 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
R5953:Il2rb
|
UTSW |
15 |
78,369,182 (GRCm39) |
nonsense |
probably null |
|
|
R6018:Il2rb
|
UTSW |
15 |
78,366,266 (GRCm39) |
missense |
possibly damaging |
0.54 |
|
R6279:Il2rb
|
UTSW |
15 |
78,365,738 (GRCm39) |
missense |
possibly damaging |
0.72 |
|
R6666:Il2rb
|
UTSW |
15 |
78,366,034 (GRCm39) |
frame shift |
probably null |
|
|
R6961:Il2rb
|
UTSW |
15 |
78,370,024 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8020:Il2rb
|
UTSW |
15 |
78,369,204 (GRCm39) |
missense |
probably benign |
|
|
R8477:Il2rb
|
UTSW |
15 |
78,370,006 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8854:Il2rb
|
UTSW |
15 |
78,369,953 (GRCm39) |
missense |
probably benign |
|
|
R8976:Il2rb
|
UTSW |
15 |
78,370,681 (GRCm39) |
missense |
probably benign |
0.04 |
|
R8979:Il2rb
|
UTSW |
15 |
78,376,052 (GRCm39) |
start gained |
probably benign |
|
|
R9509:Il2rb
|
UTSW |
15 |
78,374,416 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R9541:Il2rb
|
UTSW |
15 |
78,372,393 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9745:Il2rb
|
UTSW |
15 |
78,372,399 (GRCm39) |
missense |
probably benign |
0.00 |
|
X0018:Il2rb
|
UTSW |
15 |
78,369,965 (GRCm39) |
missense |
probably damaging |
1.00 |
|
X0066:Il2rb
|
UTSW |
15 |
78,369,156 (GRCm39) |
missense |
probably benign |
0.04 |
|
| Predicted Primers |
PCR Primer
(F):5'- ATGGATCTCCTCCCTGAAGCAG -3'
(R):5'- CCACCAGTTTCTTGTGATGGG -3'
Sequencing Primer
(F):5'- CAGGAATCTGGGATGTGACCTC -3'
(R):5'- GGGTTGGTCATTTATAGTGAAAACAG -3'
|
| Posted On |
2017-01-03 |
Incidental Mutation