Incidental Mutation 'R5162:Henmt1'
ID 452880
Institutional Source Beutler Lab
Gene Symbol Henmt1
Ensembl Gene ENSMUSG00000045662
Gene Name HEN1 methyltransferase homolog 1 (Arabidopsis)
Synonyms Hen1, 4921515J06Rik
MMRRC Submission 042744-MU
Accession Numbers
Essential gene? Possibly non essential (E-score: 0.320) question?
Stock # R5162 (G1)
Quality Score 52
Status Validated
Chromosome 3
Chromosomal Location 108847375-108868090 bp(+) (GRCm39)
Type of Mutation splice site (3 bp from exon)
DNA Base Change (assembly) T to C at 108847366 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000052414 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000050914] [ENSMUST00000059946] [ENSMUST00000098680] [ENSMUST00000106586] [ENSMUST00000196400] [ENSMUST00000196533] [ENSMUST00000197427]
AlphaFold Q8CAE2
Predicted Effect probably null
Transcript: ENSMUST00000050914
SMART Domains Protein: ENSMUSP00000052414
Gene: ENSMUSG00000051638

DomainStartEndE-ValueType
signal peptide 1 23 N/A INTRINSIC
low complexity region 109 127 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000059946
SMART Domains Protein: ENSMUSP00000054829
Gene: ENSMUSG00000045662

DomainStartEndE-ValueType
Pfam:Methyltransf_23 32 207 4.8e-9 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000098680
SMART Domains Protein: ENSMUSP00000096277
Gene: ENSMUSG00000045662

DomainStartEndE-ValueType
Pfam:Methyltransf_23 32 206 6.1e-12 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000106586
SMART Domains Protein: ENSMUSP00000102196
Gene: ENSMUSG00000045662

DomainStartEndE-ValueType
Pfam:Methyltransf_23 32 206 1.9e-11 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000196400
SMART Domains Protein: ENSMUSP00000143561
Gene: ENSMUSG00000045662

DomainStartEndE-ValueType
PDB:3HTX|D 9 90 7e-7 PDB
SCOP:d1khha_ 9 90 9e-3 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000196533
SMART Domains Protein: ENSMUSP00000143574
Gene: ENSMUSG00000045662

DomainStartEndE-ValueType
PDB:3JWG|A 8 192 2e-34 PDB
SCOP:d1fp2a2 9 154 5e-7 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000197427
Predicted Effect noncoding transcript
Transcript: ENSMUST00000197884
Meta Mutation Damage Score 0.9755 question?
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.6%
  • 10x: 97.2%
  • 20x: 94.8%
Validation Efficiency 98% (61/62)
MGI Phenotype PHENOTYPE: Mice homozygous for a knockout allele exhibit male infertility, pinhead sperm, decreased testis weight, ologospermia and asthenozoospermia. Female fertility is normal. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 55 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2010315B03Rik T A 9: 124,056,301 (GRCm39) T229S probably benign Het
Adrb3 T C 8: 27,717,348 (GRCm39) E367G probably benign Het
Ak9 T A 10: 41,233,653 (GRCm39) N630K probably damaging Het
Atp8b1 T C 18: 64,694,733 (GRCm39) I516M possibly damaging Het
Bcor C T X: 11,906,725 (GRCm39) R1551Q probably damaging Het
Cry1 T A 10: 84,969,150 (GRCm39) H558L probably benign Het
Cstdc3 A T 16: 36,132,918 (GRCm39) H65L probably damaging Het
Cyp3a57 T A 5: 145,305,893 (GRCm39) W126R probably damaging Het
Dhx36 A T 3: 62,401,201 (GRCm39) V355E probably damaging Het
Dpp6 A G 5: 27,604,013 (GRCm39) probably benign Het
Ehmt1 G T 2: 24,767,509 (GRCm39) P135T probably damaging Het
Enpp2 T C 15: 54,710,692 (GRCm39) D694G probably benign Het
Esrp2 T C 8: 106,859,930 (GRCm39) E336G probably damaging Het
Faah A T 4: 115,857,938 (GRCm39) probably benign Het
Fat1 G A 8: 45,478,846 (GRCm39) G2608R probably benign Het
Fbxo8 A T 8: 57,022,354 (GRCm39) Y122F probably damaging Het
Fgd5 A G 6: 92,051,215 (GRCm39) D1497G probably damaging Het
Fn3krp T C 11: 121,320,410 (GRCm39) F252L probably damaging Het
Fnip2 T C 3: 79,389,084 (GRCm39) Y549C probably damaging Het
Gcm2 T C 13: 41,257,131 (GRCm39) N206S probably benign Het
Grn C A 11: 102,321,380 (GRCm39) probably benign Het
H2-T10 T A 17: 36,429,843 (GRCm39) probably null Het
Man1b1 T A 2: 25,233,365 (GRCm39) L246Q probably damaging Het
Mdh2 T C 5: 135,812,329 (GRCm39) probably null Het
Mocos T C 18: 24,787,109 (GRCm39) F43L probably damaging Het
Msh2 C A 17: 88,030,841 (GRCm39) A906E probably benign Het
Naip5 T A 13: 100,359,914 (GRCm39) I441F possibly damaging Het
Naip6 C T 13: 100,437,108 (GRCm39) A472T probably benign Het
Nars2 T C 7: 96,709,027 (GRCm39) probably benign Het
Ncoa2 A T 1: 13,245,396 (GRCm39) M434K possibly damaging Het
Nlrp4g T A 9: 124,350,394 (GRCm38) noncoding transcript Het
Or14j8 T A 17: 38,263,255 (GRCm39) Q220L probably benign Het
Or9a2 G T 6: 41,748,706 (GRCm39) H176N possibly damaging Het
Pals2 T A 6: 50,155,495 (GRCm39) W259R probably damaging Het
Pars2 A G 4: 106,511,735 (GRCm39) T506A probably benign Het
Pkp2 T C 16: 16,078,200 (GRCm39) S481P probably damaging Het
Plod3 T C 5: 137,020,161 (GRCm39) W459R probably damaging Het
Pramel13 A T 4: 144,121,482 (GRCm39) L181M probably damaging Het
Prdm10 A T 9: 31,251,714 (GRCm39) I361F possibly damaging Het
Ptpro T A 6: 137,420,592 (GRCm39) V1007D probably damaging Het
Raver2 T C 4: 100,959,921 (GRCm39) C134R probably damaging Het
Rnf130 G C 11: 49,943,722 (GRCm39) A123P probably damaging Het
Slc29a4 G A 5: 142,707,207 (GRCm39) A517T possibly damaging Het
Slc38a6 T A 12: 73,376,759 (GRCm39) S138T possibly damaging Het
Spred1 T C 2: 117,008,102 (GRCm39) V336A possibly damaging Het
Sptlc3 T A 2: 139,473,263 (GRCm39) M504K probably benign Het
Syt11 T C 3: 88,655,149 (GRCm39) D78G probably damaging Het
Trim23 C T 13: 104,317,682 (GRCm39) T61I probably damaging Het
Tsg101 T C 7: 46,542,174 (GRCm39) T260A probably damaging Het
Tyw5 T C 1: 57,440,618 (GRCm39) Y48C probably damaging Het
Utp25 G T 1: 192,796,089 (GRCm39) T192K probably damaging Het
Vmn1r17 A G 6: 57,337,828 (GRCm39) V130A probably benign Het
Vmn2r89 C A 14: 51,693,620 (GRCm39) H323Q possibly damaging Het
Vps18 A G 2: 119,123,423 (GRCm39) S117G probably benign Het
Zfp93 C G 7: 23,975,757 (GRCm39) Q581E probably damaging Het
Other mutations in Henmt1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01548:Henmt1 APN 3 108,850,095 (GRCm39) missense probably damaging 1.00
R0049:Henmt1 UTSW 3 108,861,105 (GRCm39) splice site probably benign
R0143:Henmt1 UTSW 3 108,861,118 (GRCm39) missense probably damaging 0.98
R0391:Henmt1 UTSW 3 108,865,851 (GRCm39) splice site probably benign
R4035:Henmt1 UTSW 3 108,866,001 (GRCm39) missense probably damaging 1.00
R4580:Henmt1 UTSW 3 108,850,081 (GRCm39) missense probably benign 0.00
R5270:Henmt1 UTSW 3 108,867,530 (GRCm39) missense probably benign 0.03
R5550:Henmt1 UTSW 3 108,861,184 (GRCm39) missense probably damaging 1.00
R7629:Henmt1 UTSW 3 108,865,913 (GRCm39) missense probably benign 0.00
R8341:Henmt1 UTSW 3 108,865,908 (GRCm39) missense probably damaging 1.00
R8413:Henmt1 UTSW 3 108,864,965 (GRCm39) missense probably damaging 1.00
R8807:Henmt1 UTSW 3 108,867,652 (GRCm39) makesense probably null
R9512:Henmt1 UTSW 3 108,867,445 (GRCm39) missense probably benign 0.14
X0063:Henmt1 UTSW 3 108,867,636 (GRCm39) nonsense probably null
Predicted Primers PCR Primer
(F):5'- CACGTTTTCTAAGATCAGACAGC -3'
(R):5'- GCCCTGAAGACATTTTCCCAC -3'

Sequencing Primer
(F):5'- CAGACAGCCCTTAAAGTGTATATGG -3'
(R):5'- TATCTTCCGAACCCTGGGGAG -3'
Posted On 2017-01-23