Incidental Mutation 'R5858:Rpp25l'
ID 454997
Institutional Source Beutler Lab
Gene Symbol Rpp25l
Ensembl Gene ENSMUSG00000036114
Gene Name ribonuclease P/MRP 25 subunit-like
Synonyms 2810432D09Rik
MMRRC Submission 044070-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.902) question?
Stock # R5858 (G1)
Quality Score 225
Status Validated
Chromosome 4
Chromosomal Location 41712033-41713517 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 41712678 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Glutamic Acid at position 32 (D32E)
Ref Sequence ENSEMBL: ENSMUSP00000041477 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000030158] [ENSMUST00000038434] [ENSMUST00000108041] [ENSMUST00000171641]
AlphaFold Q99JH1
Predicted Effect probably benign
Transcript: ENSMUST00000030158
SMART Domains Protein: ENSMUSP00000030158
Gene: ENSMUSG00000028447

DomainStartEndE-ValueType
Pfam:Dynactin_p22 6 170 2.8e-61 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000038434
AA Change: D32E

PolyPhen 2 Score 0.009 (Sensitivity: 0.96; Specificity: 0.77)
SMART Domains Protein: ENSMUSP00000041477
Gene: ENSMUSG00000036114
AA Change: D32E

DomainStartEndE-ValueType
Pfam:Alba 26 90 8.2e-16 PFAM
low complexity region 144 163 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000108041
SMART Domains Protein: ENSMUSP00000103676
Gene: ENSMUSG00000073889

DomainStartEndE-ValueType
signal peptide 1 22 N/A INTRINSIC
IG 33 108 5.75e-4 SMART
FN3 112 204 2.18e-2 SMART
FN3 218 304 4.93e-1 SMART
low complexity region 354 365 N/A INTRINSIC
transmembrane domain 369 391 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000171641
SMART Domains Protein: ENSMUSP00000130988
Gene: ENSMUSG00000028447

DomainStartEndE-ValueType
Pfam:Dynactin_p22 1 149 1.4e-63 PFAM
Meta Mutation Damage Score 0.0941 question?
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.5%
  • 10x: 97.6%
  • 20x: 92.7%
Validation Efficiency 100% (60/60)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that appears to belong to a family of evolutionarily related proteins (DUF78), that may share one or more domains in common. Members of this family are small archaebacterial proteins with no known function. Alternative splicing has been observed at this locus and two variants, both encoding the same protein, have been identified. [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 48 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2310009B15Rik T A 1: 138,781,343 (GRCm39) Q102L probably benign Het
Ak9 G A 10: 41,299,023 (GRCm39) V1575I unknown Het
Alg14 G A 3: 121,113,737 (GRCm39) probably benign Het
Arl5a T C 2: 52,302,118 (GRCm39) I99V probably benign Het
Cacul1 T C 19: 60,517,482 (GRCm39) probably benign Het
Cc2d2a C T 5: 43,873,117 (GRCm39) R934C probably damaging Het
Ccr2 A G 9: 123,906,464 (GRCm39) E248G probably benign Het
Cds2 G T 2: 132,144,033 (GRCm39) V287L probably benign Het
Cflar T C 1: 58,793,010 (GRCm39) S459P probably benign Het
Clcc1 A G 3: 108,568,744 (GRCm39) D21G probably damaging Het
Col8a2 C T 4: 126,205,093 (GRCm39) probably benign Het
Cops7a A T 6: 124,937,134 (GRCm39) S186T possibly damaging Het
Dagla C T 19: 10,232,332 (GRCm39) probably benign Het
Dapp1 T C 3: 137,667,292 (GRCm39) Y49C possibly damaging Het
Dnase1 T C 16: 3,857,513 (GRCm39) probably benign Het
Dock9 A G 14: 121,866,204 (GRCm39) V633A probably benign Het
E4f1 A G 17: 24,664,302 (GRCm39) F461L probably damaging Het
Epg5 T A 18: 77,991,514 (GRCm39) C70* probably null Het
Ephb2 T C 4: 136,399,756 (GRCm39) H589R probably benign Het
Fam184b A T 5: 45,796,461 (GRCm39) C41S probably damaging Het
Hace1 A G 10: 45,587,621 (GRCm39) T907A possibly damaging Het
Il31 T A 5: 123,618,637 (GRCm39) T129S probably benign Het
Il6 A T 5: 30,218,472 (GRCm39) T23S possibly damaging Het
Kif12 T C 4: 63,084,647 (GRCm39) E557G probably benign Het
Krt24 A T 11: 99,175,591 (GRCm39) L148H probably damaging Het
Mapk8ip1 A G 2: 92,215,317 (GRCm39) F635S probably damaging Het
Mcc A T 18: 44,643,208 (GRCm39) V313E probably damaging Het
Muc15 A G 2: 110,562,143 (GRCm39) D193G probably damaging Het
Nbea A G 3: 55,860,455 (GRCm39) probably null Het
Or12e10 A T 2: 87,640,985 (GRCm39) I274F probably benign Het
Or2ag1 T A 7: 106,472,975 (GRCm39) Y159F probably benign Het
Or2m13 A G 16: 19,225,975 (GRCm39) S265P possibly damaging Het
Or5b94 A G 19: 12,651,743 (GRCm39) Y58C probably damaging Het
P4ha1 A T 10: 59,175,200 (GRCm39) L53F probably damaging Het
Pcdha7 A G 18: 37,109,279 (GRCm39) D768G probably damaging Het
Pdzd2 T A 15: 12,442,675 (GRCm39) D208V probably damaging Het
Ptk2 A T 15: 73,192,944 (GRCm39) I159K probably benign Het
Rfx6 A G 10: 51,601,964 (GRCm39) N761S probably benign Het
Rxrg A T 1: 167,454,925 (GRCm39) K169N probably damaging Het
Ryr2 T C 13: 11,575,460 (GRCm39) D4846G probably damaging Het
Sec23a A G 12: 59,019,821 (GRCm39) F553S probably damaging Het
Spen T C 4: 141,201,182 (GRCm39) I2482V probably benign Het
Ston1 A G 17: 88,943,059 (GRCm39) D155G possibly damaging Het
Tha1 A G 11: 117,764,210 (GRCm39) F6L unknown Het
Trank1 T A 9: 111,221,604 (GRCm39) D2780E probably benign Het
Ubqln5 T C 7: 103,778,018 (GRCm39) T269A probably benign Het
Vars1 C T 17: 35,224,451 (GRCm39) R324C probably benign Het
Zfp287 T A 11: 62,604,833 (GRCm39) Q691H probably damaging Het
Other mutations in Rpp25l
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL03196:Rpp25l APN 4 41,712,541 (GRCm39) missense possibly damaging 0.65
R1742:Rpp25l UTSW 4 41,712,763 (GRCm39) missense probably damaging 1.00
R5768:Rpp25l UTSW 4 41,712,649 (GRCm39) missense probably damaging 0.98
R7570:Rpp25l UTSW 4 41,712,529 (GRCm39) missense probably damaging 1.00
R7593:Rpp25l UTSW 4 41,712,305 (GRCm39) missense unknown
R7679:Rpp25l UTSW 4 41,712,326 (GRCm39) missense unknown
Predicted Primers PCR Primer
(F):5'- TAGTCCCGTGTCTGGTGAAG -3'
(R):5'- GATGGACCTGGTCATGTTCC -3'

Sequencing Primer
(F):5'- CTGTCCTCCGTTTGCAGGAAG -3'
(R):5'- GGTCATGTTCCCGCCAC -3'
Posted On 2017-02-10