Mutagenetix > Incidental Mutation

Incidental Mutation 'R5873:Lrrn1'

455306

Institutional Source

Beutler Lab

Gene Symbol

Lrrn1

Ensembl Gene

ENSMUSG00000034648

Gene Name

leucine rich repeat protein 1, neuronal

Synonyms

2810047E21Rik, NLRR-1

MMRRC Submission

044080-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.345) question?

Stock #

R5873 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

107506729-107547175 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 107545936 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 578 (V578A)

Ref Sequence

ENSEMBL: ENSMUSP00000037096 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000049285]

AlphaFold

Q61809

Predicted Effect

probably damaging
Transcript: ENSMUST00000049285
AA Change: V578A

PolyPhen 2 Score 0.976 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000037096
Gene: ENSMUSG00000034648
AA Change: V578A

Domain	Start	End	E-Value	Type
signal peptide	1	25	N/A	INTRINSIC
LRRNT	31	76	2.89e-1	SMART
LRR	94	117	1.06e1	SMART
LRR	118	141	1.89e-1	SMART
LRR_TYP	142	165	4.3e-5	SMART
LRR	166	189	1.76e-1	SMART
LRR	214	237	4.09e1	SMART
LRR	238	261	1.53e1	SMART
LRR	262	285	2.63e0	SMART
LRR	311	335	1.45e2	SMART
LRR	336	359	4.21e1	SMART
LRRCT	371	423	2.14e-10	SMART
IGc2	438	506	6.34e-15	SMART
FN3	523	605	8.71e-2	SMART
transmembrane domain	631	653	N/A	INTRINSIC
low complexity region	690	701	N/A	INTRINSIC

Coding Region Coverage

1x: 99.9%
3x: 99.5%
10x: 97.6%
20x: 92.9%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Homozygous null mutant mice exhibited decreased exploratory activity and the female mutants exhibited an increased anxiety-like response during open field testing. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 60 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921524L21Rik	T	A	18: 6,630,167 (GRCm39)		probably null	Het
4930505A04Rik	T	A	11: 30,376,220 (GRCm39)	K216*	probably null	Het
5330417H12Rik	T	C	7: 107,223,975 (GRCm39)		probably benign	Het
Abcc4	G	T	14: 118,763,702 (GRCm39)	D1044E	probably benign	Het
Adgre4	A	G	17: 56,159,282 (GRCm39)	T656A	probably benign	Het
Ankk1	T	C	9: 49,327,196 (GRCm39)	N661S	probably benign	Het
Asah2	A	G	19: 31,981,082 (GRCm39)		probably null	Het
Asxl3	A	G	18: 22,649,142 (GRCm39)	D377G	probably benign	Het
C3ar1	A	G	6: 122,827,381 (GRCm39)	S279P	probably benign	Het
C7	A	G	15: 5,034,717 (GRCm39)	V610A	probably damaging	Het
Cacna2d3	C	A	14: 29,442,891 (GRCm39)	A48S	probably benign	Het
Card11	T	A	5: 140,894,393 (GRCm39)	I79F	probably damaging	Het
Casc3	A	G	11: 98,712,270 (GRCm39)	Y103C	unknown	Het
Cass4	G	T	2: 172,268,688 (GRCm39)	V259L	probably benign	Het
Col14a1	A	G	15: 55,309,182 (GRCm39)		probably benign	Het
Cox10	A	G	11: 63,962,512 (GRCm39)	S110P	probably benign	Het
Cpt1b	T	C	15: 89,304,931 (GRCm39)	Y439C	probably damaging	Het
Crybb2	C	T	5: 113,213,759 (GRCm39)		probably null	Het
Cyp2b23	C	T	7: 26,374,431 (GRCm39)	R271H	probably benign	Het
Dnah17	T	C	11: 117,947,723 (GRCm39)	I3039V	probably benign	Het
Dnpep	T	C	1: 75,291,787 (GRCm39)	D242G	probably damaging	Het
Dock10	T	A	1: 80,551,855 (GRCm39)	N660I	probably damaging	Het
Esco2	T	C	14: 66,061,640 (GRCm39)	D471G	probably benign	Het
Evpl	A	T	11: 116,125,258 (GRCm39)	L97H	probably damaging	Het
Exoc3l4	A	T	12: 111,389,850 (GRCm39)	I142F	probably damaging	Het
Fry	C	A	5: 150,302,350 (GRCm39)	P519Q	probably damaging	Het
Gal3st2	T	A	1: 93,801,472 (GRCm39)	F92I	probably benign	Het
Galm	A	G	17: 80,445,532 (GRCm39)	E94G	probably benign	Het
Gfy	T	G	7: 44,827,004 (GRCm39)	H364P	probably damaging	Het
Helz2	A	G	2: 180,875,821 (GRCm39)	S1558P	possibly damaging	Het
Hmmr	T	A	11: 40,598,527 (GRCm39)	Q600L	probably damaging	Het
Hnrnph3	A	G	10: 62,855,170 (GRCm39)		probably null	Het
Igkv4-90	T	A	6: 68,784,453 (GRCm39)	N21I	probably benign	Het
Kpna1	A	G	16: 35,834,598 (GRCm39)		probably benign	Het
Krt28	A	C	11: 99,257,716 (GRCm39)	L375R	probably damaging	Het
Lta4h	T	C	10: 93,305,052 (GRCm39)		probably null	Het
Matk	T	A	10: 81,095,963 (GRCm39)	V166E	probably benign	Het
Muc4	C	A	16: 32,570,113 (GRCm39)	T391K	possibly damaging	Het
Mybl1	T	A	1: 9,755,890 (GRCm39)	T220S	possibly damaging	Het
Nrp1	T	C	8: 129,194,858 (GRCm39)	V438A	probably damaging	Het
Or2y6	A	T	11: 52,104,180 (GRCm39)	L212Q	probably damaging	Het
Or6p1	T	A	1: 174,258,348 (GRCm39)	M118K	possibly damaging	Het
Pdia4	A	T	6: 47,785,110 (GRCm39)	W86R	probably damaging	Het
Pdzd7	T	A	19: 45,016,388 (GRCm39)	D911V	probably damaging	Het
Pkd1	A	G	17: 24,788,804 (GRCm39)	Q854R	probably benign	Het
Ppl	A	G	16: 4,923,913 (GRCm39)		probably null	Het
Ppp1r26	A	G	2: 28,341,617 (GRCm39)	T416A	probably benign	Het
Prdm15	T	C	16: 97,609,889 (GRCm39)	D585G	probably damaging	Het
Rbak	A	G	5: 143,159,466 (GRCm39)	V529A	probably benign	Het
Rc3h1	C	T	1: 160,787,071 (GRCm39)	T822I	probably damaging	Het
Slc25a18	A	T	6: 120,763,242 (GRCm39)		probably null	Het
Taf2	T	C	15: 54,901,818 (GRCm39)	N792S	probably benign	Het
Tat	T	C	8: 110,718,581 (GRCm39)		probably null	Het
Tbx21	A	T	11: 97,005,474 (GRCm39)		probably null	Het
Txndc11	A	G	16: 10,893,069 (GRCm39)	L887P	probably damaging	Het
Usp10	A	G	8: 120,673,831 (GRCm39)	T399A	possibly damaging	Het
Vmn2r26	A	T	6: 124,038,633 (GRCm39)	H736L	probably benign	Het
Vstm2a	T	A	11: 16,208,044 (GRCm39)	F13I	probably damaging	Het
Zkscan5	A	G	5: 145,157,204 (GRCm39)	R496G	possibly damaging	Het
Zranb2	C	T	3: 157,242,020 (GRCm39)	R36*	probably null	Het

Other mutations in Lrrn1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00834:Lrrn1	APN	6	107,545,269 (GRCm39)	missense	probably benign	0.06
IGL00949:Lrrn1	APN	6	107,546,261 (GRCm39)	missense	probably benign	0.15
IGL01594:Lrrn1	APN	6	107,544,454 (GRCm39)	missense	probably damaging	0.99
IGL02814:Lrrn1	APN	6	107,544,313 (GRCm39)	missense	probably damaging	1.00
IGL02824:Lrrn1	APN	6	107,545,495 (GRCm39)	missense	possibly damaging	0.57
IGL02931:Lrrn1	APN	6	107,544,709 (GRCm39)	missense	probably damaging	1.00
R0399:Lrrn1	UTSW	6	107,546,081 (GRCm39)	missense	probably benign
R1109:Lrrn1	UTSW	6	107,544,225 (GRCm39)	missense	probably benign
R1620:Lrrn1	UTSW	6	107,545,327 (GRCm39)	missense	probably damaging	1.00
R1826:Lrrn1	UTSW	6	107,544,529 (GRCm39)	missense	probably benign	0.05
R1893:Lrrn1	UTSW	6	107,545,083 (GRCm39)	missense	possibly damaging	0.82
R2327:Lrrn1	UTSW	6	107,545,794 (GRCm39)	missense	probably benign	0.05
R3684:Lrrn1	UTSW	6	107,544,910 (GRCm39)	missense	probably benign	0.13
R3757:Lrrn1	UTSW	6	107,546,169 (GRCm39)	missense	possibly damaging	0.81
R4538:Lrrn1	UTSW	6	107,545,598 (GRCm39)	missense	probably benign	0.21
R4922:Lrrn1	UTSW	6	107,545,311 (GRCm39)	missense	probably damaging	1.00
R4946:Lrrn1	UTSW	6	107,545,851 (GRCm39)	missense	probably benign	0.16
R4970:Lrrn1	UTSW	6	107,546,305 (GRCm39)	missense	probably benign	0.06
R4977:Lrrn1	UTSW	6	107,545,668 (GRCm39)	missense	probably benign
R5121:Lrrn1	UTSW	6	107,546,168 (GRCm39)	missense	possibly damaging	0.89
R5186:Lrrn1	UTSW	6	107,546,185 (GRCm39)	missense	probably damaging	1.00
R5625:Lrrn1	UTSW	6	107,544,315 (GRCm39)	missense	probably damaging	0.99
R5736:Lrrn1	UTSW	6	107,544,345 (GRCm39)	missense	probably damaging	1.00
R5949:Lrrn1	UTSW	6	107,544,465 (GRCm39)	missense	probably benign	0.00
R6046:Lrrn1	UTSW	6	107,545,488 (GRCm39)	missense	probably benign	0.00
R6370:Lrrn1	UTSW	6	107,546,185 (GRCm39)	missense	probably damaging	1.00
R7138:Lrrn1	UTSW	6	107,545,336 (GRCm39)	missense	probably damaging	1.00
R7169:Lrrn1	UTSW	6	107,544,565 (GRCm39)	missense	probably damaging	1.00
R7413:Lrrn1	UTSW	6	107,546,083 (GRCm39)	missense	probably benign	0.00
R7449:Lrrn1	UTSW	6	107,545,482 (GRCm39)	missense	possibly damaging	0.91
R7969:Lrrn1	UTSW	6	107,544,811 (GRCm39)	missense	probably damaging	1.00
R8077:Lrrn1	UTSW	6	107,545,783 (GRCm39)	missense	probably damaging	0.99
R8288:Lrrn1	UTSW	6	107,543,955 (GRCm39)	start gained	probably benign
R8420:Lrrn1	UTSW	6	107,546,294 (GRCm39)	missense	probably benign	0.00
R8725:Lrrn1	UTSW	6	107,544,303 (GRCm39)	nonsense	probably null
R9007:Lrrn1	UTSW	6	107,544,820 (GRCm39)	missense	probably damaging	0.99
R9133:Lrrn1	UTSW	6	107,544,568 (GRCm39)	missense	probably damaging	1.00
R9367:Lrrn1	UTSW	6	107,545,093 (GRCm39)	missense	probably damaging	0.98
R9373:Lrrn1	UTSW	6	107,545,465 (GRCm39)	missense	possibly damaging	0.82
R9475:Lrrn1	UTSW	6	107,545,261 (GRCm39)	missense	probably damaging	1.00
R9513:Lrrn1	UTSW	6	107,545,505 (GRCm39)	missense	probably benign	0.04
R9516:Lrrn1	UTSW	6	107,545,505 (GRCm39)	missense	probably benign	0.04
R9549:Lrrn1	UTSW	6	107,545,978 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TCGAGTGGCAACTATCAAGG -3'
(R):5'- ATGACGGCAAACATGGACCC -3'

Sequencing Primer
(F):5'- ATGGAACCCTTCTAGATGGTGCAC -3'
(R):5'- TGGACCCCATCACCGCAG -3'

Posted On

2017-02-10