Incidental Mutation 'R5878:Slco6d1'
ID 455633
Institutional Source Beutler Lab
Gene Symbol Slco6d1
Ensembl Gene ENSMUSG00000026336
Gene Name solute carrier organic anion transporter family, member 6d1
Synonyms 4921511I05Rik
MMRRC Submission 044084-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.052) question?
Stock # R5878 (G1)
Quality Score 225
Status Validated
Chromosome 1
Chromosomal Location 98348849-98444716 bp(+) (GRCm39)
Type of Mutation splice site
DNA Base Change (assembly) T to A at 98391561 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000125258 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000027575] [ENSMUST00000160796] [ENSMUST00000162468]
AlphaFold Q9D5W6
Predicted Effect probably benign
Transcript: ENSMUST00000027575
SMART Domains Protein: ENSMUSP00000027575
Gene: ENSMUSG00000026336

DomainStartEndE-ValueType
Pfam:MFS_1 86 463 1.8e-13 PFAM
KAZAL 483 527 2.3e0 SMART
low complexity region 558 572 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000160287
Predicted Effect probably benign
Transcript: ENSMUST00000160796
SMART Domains Protein: ENSMUSP00000123850
Gene: ENSMUSG00000026336

DomainStartEndE-ValueType
Pfam:MFS_1 86 463 2.4e-13 PFAM
KAZAL 483 527 2.3e0 SMART
low complexity region 558 572 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000162468
SMART Domains Protein: ENSMUSP00000125258
Gene: ENSMUSG00000026336

DomainStartEndE-ValueType
Pfam:OATP 64 313 2.1e-27 PFAM
Meta Mutation Damage Score 0.0898 question?
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 97.9%
  • 20x: 93.7%
Validation Efficiency 99% (66/67)
Allele List at MGI
Other mutations in this stock
Total: 64 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca12 A T 1: 71,385,792 (GRCm39) N275K possibly damaging Het
Abhd6 G A 14: 8,028,286 (GRCm38) V6I probably benign Het
Afap1l2 T C 19: 56,904,107 (GRCm39) T727A probably benign Het
Aggf1 T C 13: 95,506,065 (GRCm39) E174G probably benign Het
Ahnak T G 19: 8,985,706 (GRCm39) L2330R probably damaging Het
Arb2a T A 13: 78,100,186 (GRCm39) V129E probably damaging Het
Arfgef2 A G 2: 166,712,137 (GRCm39) T1205A probably benign Het
Ccdc3 T C 2: 5,233,827 (GRCm39) L217P probably benign Het
Cfap54 T C 10: 92,800,423 (GRCm39) D1595G probably benign Het
Cps1 G T 1: 67,197,037 (GRCm39) probably null Het
Fam120b A G 17: 15,622,502 (GRCm39) D160G probably damaging Het
Fezf1 C A 6: 23,247,580 (GRCm39) R165L possibly damaging Het
Fkbp15 A T 4: 62,225,145 (GRCm39) L838H probably benign Het
Frmd3 G A 4: 74,071,847 (GRCm39) G243D probably damaging Het
Gldc A T 19: 30,120,867 (GRCm39) probably null Het
Gm10188 T C 1: 132,156,940 (GRCm39) probably benign Het
Gm5190 T A 12: 113,360,859 (GRCm39) noncoding transcript Het
Gria1 T C 11: 57,208,628 (GRCm39) probably null Het
Hdhd5 A G 6: 120,491,485 (GRCm39) L206P probably damaging Het
Herc2 A G 7: 55,773,996 (GRCm39) N1149S probably benign Het
Inca1 G A 11: 70,586,808 (GRCm39) probably benign Het
Iqch G A 9: 63,455,272 (GRCm39) S175F probably damaging Het
Itpr3 T G 17: 27,329,836 (GRCm39) D1543E probably benign Het
Khk T A 5: 31,088,219 (GRCm39) probably null Het
Kiz C T 2: 146,731,521 (GRCm39) S337L probably damaging Het
Lzts3 G A 2: 130,478,459 (GRCm39) T213I probably damaging Het
Mab21l2 T A 3: 86,454,025 (GRCm39) D325V probably damaging Het
Mctp2 A G 7: 71,863,856 (GRCm39) S336P probably benign Het
Me3 T A 7: 89,497,214 (GRCm39) L405Q probably benign Het
Mgst2 A T 3: 51,568,651 (GRCm39) probably benign Het
Myh2 A G 11: 67,083,330 (GRCm39) E1431G probably damaging Het
Naip6 A G 13: 100,436,181 (GRCm39) S781P probably damaging Het
Nr3c2 A G 8: 77,634,897 (GRCm39) probably null Het
Or10ab5 A T 7: 108,244,946 (GRCm39) L279Q probably damaging Het
Or6s1 A G 14: 51,308,449 (GRCm39) Y134H probably damaging Het
Or6x1 C T 9: 40,098,867 (GRCm39) T152I probably benign Het
Otop1 G T 5: 38,435,166 (GRCm39) R132L possibly damaging Het
Parg T A 14: 31,939,619 (GRCm39) D548E possibly damaging Het
Pcdhga4 G T 18: 37,820,739 (GRCm39) G763W probably benign Het
Pde10a A G 17: 9,168,204 (GRCm39) N9S possibly damaging Het
Pi4k2a T C 19: 42,089,080 (GRCm39) I147T probably benign Het
Polh T A 17: 46,505,251 (GRCm39) T122S probably damaging Het
Ptpn13 T C 5: 103,624,984 (GRCm39) V96A possibly damaging Het
Ptpn6 C A 6: 124,705,748 (GRCm39) C132F probably damaging Het
Rbm19 T A 5: 120,270,932 (GRCm39) V585E probably damaging Het
Relch T A 1: 105,620,685 (GRCm39) S387T probably benign Het
Rp1l1 C T 14: 64,266,355 (GRCm39) P647L probably benign Het
Rrp1b A G 17: 32,266,649 (GRCm39) E72G probably damaging Het
Shcbp1 A T 8: 4,798,742 (GRCm39) H392Q probably benign Het
Skic2 C T 17: 35,065,093 (GRCm39) R371Q possibly damaging Het
Slc13a5 G A 11: 72,144,217 (GRCm39) T287I possibly damaging Het
Slc22a27 T A 19: 7,904,122 (GRCm39) E5V probably benign Het
Slc38a2 A G 15: 96,590,465 (GRCm39) V293A probably damaging Het
Sri G C 5: 8,109,353 (GRCm39) D46H probably damaging Het
Tango6 A G 8: 107,415,800 (GRCm39) D207G possibly damaging Het
Tigd4 T C 3: 84,501,749 (GRCm39) M222T probably benign Het
Tmem229a T C 6: 24,955,172 (GRCm39) D194G probably benign Het
Trank1 T C 9: 111,195,753 (GRCm39) V1259A possibly damaging Het
Trdv5 T C 14: 54,386,255 (GRCm39) D70G probably benign Het
Trim52 T A 14: 106,344,375 (GRCm39) M11K probably damaging Het
Wdr62 A G 7: 29,940,772 (GRCm39) M882T probably benign Het
Ybx3 A G 6: 131,344,726 (GRCm39) probably null Het
Zfand2b A G 1: 75,147,154 (GRCm39) probably benign Het
Zfp91 T A 19: 12,747,684 (GRCm39) T480S possibly damaging Het
Other mutations in Slco6d1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00420:Slco6d1 APN 1 98,359,955 (GRCm39) splice site probably null
IGL00678:Slco6d1 APN 1 98,424,069 (GRCm39) missense probably benign 0.01
IGL00790:Slco6d1 APN 1 98,348,925 (GRCm39) utr 5 prime probably benign
IGL01694:Slco6d1 APN 1 98,427,570 (GRCm39) missense probably damaging 1.00
IGL02003:Slco6d1 APN 1 98,408,493 (GRCm39) missense probably damaging 1.00
IGL02059:Slco6d1 APN 1 98,374,531 (GRCm39) missense possibly damaging 0.95
IGL02085:Slco6d1 APN 1 98,371,468 (GRCm39) missense probably damaging 1.00
IGL02683:Slco6d1 APN 1 98,408,397 (GRCm39) missense probably benign 0.05
IGL02736:Slco6d1 APN 1 98,356,036 (GRCm39) missense possibly damaging 0.55
IGL03279:Slco6d1 APN 1 98,394,405 (GRCm39) missense probably damaging 1.00
BB008:Slco6d1 UTSW 1 98,356,141 (GRCm39) missense probably damaging 1.00
BB018:Slco6d1 UTSW 1 98,356,141 (GRCm39) missense probably damaging 1.00
PIT4581001:Slco6d1 UTSW 1 98,351,050 (GRCm39) missense possibly damaging 0.46
R0326:Slco6d1 UTSW 1 98,418,359 (GRCm39) missense probably benign 0.02
R0359:Slco6d1 UTSW 1 98,394,422 (GRCm39) missense probably benign 0.21
R0554:Slco6d1 UTSW 1 98,394,422 (GRCm39) missense probably benign 0.21
R0589:Slco6d1 UTSW 1 98,427,472 (GRCm39) splice site probably benign
R0733:Slco6d1 UTSW 1 98,355,994 (GRCm39) nonsense probably null
R0883:Slco6d1 UTSW 1 98,349,124 (GRCm39) missense probably benign 0.00
R1316:Slco6d1 UTSW 1 98,394,518 (GRCm39) missense probably benign 0.02
R1370:Slco6d1 UTSW 1 98,350,819 (GRCm39) missense probably benign 0.01
R1401:Slco6d1 UTSW 1 98,418,341 (GRCm39) missense probably damaging 1.00
R1691:Slco6d1 UTSW 1 98,435,292 (GRCm39) missense probably benign 0.34
R1740:Slco6d1 UTSW 1 98,356,097 (GRCm39) missense probably damaging 1.00
R1767:Slco6d1 UTSW 1 98,418,274 (GRCm39) missense possibly damaging 0.90
R1827:Slco6d1 UTSW 1 98,348,941 (GRCm39) missense probably damaging 0.96
R2138:Slco6d1 UTSW 1 98,371,385 (GRCm39) missense probably benign 0.19
R2849:Slco6d1 UTSW 1 98,394,441 (GRCm39) missense probably benign 0.02
R3753:Slco6d1 UTSW 1 98,427,502 (GRCm39) missense probably damaging 0.99
R4066:Slco6d1 UTSW 1 98,391,571 (GRCm39) critical splice acceptor site probably benign
R4429:Slco6d1 UTSW 1 98,424,091 (GRCm39) missense possibly damaging 0.66
R4480:Slco6d1 UTSW 1 98,435,299 (GRCm39) nonsense probably null
R4656:Slco6d1 UTSW 1 98,350,928 (GRCm39) missense probably benign 0.06
R4810:Slco6d1 UTSW 1 98,350,979 (GRCm39) missense possibly damaging 0.83
R4814:Slco6d1 UTSW 1 98,350,899 (GRCm39) missense probably benign 0.15
R5389:Slco6d1 UTSW 1 98,371,369 (GRCm39) missense probably benign 0.00
R5504:Slco6d1 UTSW 1 98,349,064 (GRCm39) missense probably damaging 0.99
R5619:Slco6d1 UTSW 1 98,423,947 (GRCm39) missense probably damaging 1.00
R5688:Slco6d1 UTSW 1 98,408,493 (GRCm39) missense probably damaging 1.00
R5820:Slco6d1 UTSW 1 98,427,503 (GRCm39) missense probably damaging 0.97
R6261:Slco6d1 UTSW 1 98,427,588 (GRCm39) missense probably benign 0.10
R6450:Slco6d1 UTSW 1 98,349,192 (GRCm39) missense probably benign 0.29
R6452:Slco6d1 UTSW 1 98,348,937 (GRCm39) missense probably benign 0.44
R7338:Slco6d1 UTSW 1 98,349,097 (GRCm39) missense probably benign 0.11
R7375:Slco6d1 UTSW 1 98,349,172 (GRCm39) missense probably damaging 1.00
R7456:Slco6d1 UTSW 1 98,349,082 (GRCm39) missense possibly damaging 0.66
R7567:Slco6d1 UTSW 1 98,425,252 (GRCm39) missense probably damaging 1.00
R7729:Slco6d1 UTSW 1 98,425,248 (GRCm39) missense probably damaging 0.98
R7931:Slco6d1 UTSW 1 98,356,141 (GRCm39) missense probably damaging 1.00
R8088:Slco6d1 UTSW 1 98,394,431 (GRCm39) missense possibly damaging 0.75
R9021:Slco6d1 UTSW 1 98,371,396 (GRCm39) missense probably benign 0.18
R9080:Slco6d1 UTSW 1 98,348,983 (GRCm39) missense probably benign 0.01
R9123:Slco6d1 UTSW 1 98,423,919 (GRCm39) missense probably damaging 1.00
R9310:Slco6d1 UTSW 1 98,427,619 (GRCm39) missense possibly damaging 0.71
Predicted Primers PCR Primer
(F):5'- TGGTGAATAAAACCAGGTTATGTCA -3'
(R):5'- ACAGCTAGAAGTGTCAGTATACCTG -3'

Sequencing Primer
(F):5'- GGGATGCATTTTCTCCCATTCAGAG -3'
(R):5'- CCTGATATCAAGAGCAATGTAGAGCC -3'
Posted On 2017-02-10