Mutagenetix > Incidental Mutation

Incidental Mutation 'R5887:Tfg'

456187

Institutional Source

Beutler Lab

Gene Symbol

Tfg

Ensembl Gene

ENSMUSG00000022757

Gene Name

Trk-fused gene

Synonyms

Accession Numbers

Essential gene?

Probably essential (E-score: 0.942) question?

Stock #

R5887 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

56510695-56537813 bp(-) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

A to T at 56514779 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Stop codon at position 135 (Y135*)

Ref Sequence

ENSEMBL: ENSMUSP00000119884 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000065515] [ENSMUST00000096012] [ENSMUST00000156522]

AlphaFold

Q9Z1A1

Predicted Effect

probably null
Transcript: ENSMUST00000065515
AA Change: Y265*

SMART Domains

Protein: ENSMUSP00000067867
Gene: ENSMUSG00000022757
AA Change: Y265*

Domain	Start	End	E-Value	Type
PB1	10	91	5.97e-19	SMART
coiled coil region	97	124	N/A	INTRINSIC
low complexity region	208	236	N/A	INTRINSIC
low complexity region	241	269	N/A	INTRINSIC
low complexity region	272	295	N/A	INTRINSIC
low complexity region	304	334	N/A	INTRINSIC
low complexity region	361	373	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000096012

SMART Domains

Protein: ENSMUSP00000093711
Gene: ENSMUSG00000035258

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
FN3	114	203	3.08e-2	SMART
low complexity region	433	446	N/A	INTRINSIC
low complexity region	634	647	N/A	INTRINSIC
low complexity region	651	664	N/A	INTRINSIC
FN3	841	924	6.29e-8	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000127994
AA Change: Y203*

SMART Domains

Protein: ENSMUSP00000121564
Gene: ENSMUSG00000022757
AA Change: Y203*

Domain	Start	End	E-Value	Type
Blast:PB1	2	30	6e-11	BLAST
coiled coil region	35	62	N/A	INTRINSIC
low complexity region	147	175	N/A	INTRINSIC
low complexity region	180	208	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000156522
AA Change: Y135*

SMART Domains

Protein: ENSMUSP00000119884
Gene: ENSMUSG00000022757
AA Change: Y135*

Domain	Start	End	E-Value	Type
low complexity region	82	139	N/A	INTRINSIC
low complexity region	142	165	N/A	INTRINSIC
low complexity region	174	202	N/A	INTRINSIC

Coding Region Coverage

1x: 99.8%
3x: 99.4%
10x: 97.2%
20x: 91.0%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] There are several documented fusion oncoproteins encoded partially by this gene. This gene also participates in several oncogenic rearrangements resulting in anaplastic lymphoma and mixoid chondrosarcoma, and may play a role in the NF-kappaB pathway. Multiple transcript variants have been found for this gene. [provided by RefSeq, Sep 2010]

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930590J08Rik	C	T	6: 91,892,124 (GRCm39)	Q129*	probably null	Het
Acad8	A	T	9: 26,890,620 (GRCm39)		probably null	Het
AK157302	T	C	13: 21,679,579 (GRCm39)	I35T	possibly damaging	Het
Arfgef3	G	T	10: 18,483,413 (GRCm39)	S1437*	probably null	Het
Calcrl	A	T	2: 84,200,841 (GRCm39)	W68R	probably damaging	Het
Cd200l1	T	A	16: 45,238,279 (GRCm39)	L178F	probably damaging	Het
Cd59a	A	G	2: 103,934,546 (GRCm39)	R5G	probably damaging	Het
Chl1	C	T	6: 103,694,565 (GRCm39)	A1091V	probably benign	Het
Copg1	T	C	6: 87,879,279 (GRCm39)	F442L	probably damaging	Het
Creld1	T	C	6: 113,469,860 (GRCm39)	*421Q	probably null	Het
Crocc2	T	A	1: 93,121,838 (GRCm39)	H662Q	possibly damaging	Het
Csf2ra	G	A	19: 61,215,766 (GRCm39)	A13V	possibly damaging	Het
Cul3	T	C	1: 80,254,139 (GRCm39)	T546A	possibly damaging	Het
Dnah8	C	T	17: 31,013,691 (GRCm39)	P3811S	probably damaging	Het
Dock6	T	A	9: 21,731,690 (GRCm39)	H1173L	probably damaging	Het
Dpysl4	T	C	7: 138,676,192 (GRCm39)	I328T	possibly damaging	Het
Dspp	G	A	5: 104,323,321 (GRCm39)	G155R	probably damaging	Het
Fbxo33	A	T	12: 59,251,545 (GRCm39)	C57*	probably null	Het
Frrs1	T	A	3: 116,690,399 (GRCm39)	V14D	probably benign	Het
Gm13199	C	T	2: 5,867,113 (GRCm39)	G96S	unknown	Het
Gpr155	A	T	2: 73,174,062 (GRCm39)	C754*	probably null	Het
Gpr62	A	T	9: 106,342,814 (GRCm39)	V38E	probably damaging	Het
Kcnt2	C	A	1: 140,353,104 (GRCm39)	P271H	probably damaging	Het
Kpna3	C	T	14: 61,640,461 (GRCm39)	V34I	probably benign	Het
Lamb1	C	T	12: 31,316,863 (GRCm39)	Q71*	probably null	Het
Lipk	T	C	19: 34,016,507 (GRCm39)	I245T	possibly damaging	Het
Lrp1b	T	G	2: 40,711,719 (GRCm39)	N3281T	possibly damaging	Het
Lrp5	A	C	19: 3,654,094 (GRCm39)	I1111S	probably benign	Het
Mmrn1	T	C	6: 60,964,058 (GRCm39)	V1020A	probably benign	Het
Or4c107	G	A	2: 88,789,098 (GRCm39)	C96Y	possibly damaging	Het
Or8b48	G	A	9: 38,493,080 (GRCm39)	C169Y	probably damaging	Het
Or8g34	T	C	9: 39,372,787 (GRCm39)	L17P	probably damaging	Het
Pcdha7	A	T	18: 37,108,960 (GRCm39)	T662S	probably damaging	Het
Pcdhga6	A	G	18: 37,841,612 (GRCm39)	D444G	probably damaging	Het
Pkd2	T	G	5: 104,646,405 (GRCm39)	D737E	probably damaging	Het
Plcd4	C	T	1: 74,590,249 (GRCm39)	R161W	probably damaging	Het
Prpf8	A	G	11: 75,391,734 (GRCm39)	Y1494C	possibly damaging	Het
Rad17	A	C	13: 100,770,369 (GRCm39)		probably null	Het
Rbm17	A	T	2: 11,590,485 (GRCm39)	F390Y	probably damaging	Het
Rhod	A	T	19: 4,489,315 (GRCm39)	L22Q	probably damaging	Het
Serpina1f	T	C	12: 103,656,046 (GRCm39)	D394G	possibly damaging	Het
Serpina1f	G	A	12: 103,659,890 (GRCm39)	Q131*	probably null	Het
Spocd1	A	T	4: 129,842,752 (GRCm39)	S56C	probably damaging	Het
St7l	G	A	3: 104,782,244 (GRCm39)	R207H	probably benign	Het
Tasor	T	A	14: 27,188,254 (GRCm39)	L900*	probably null	Het
Tbx18	T	C	9: 87,595,566 (GRCm39)	D336G	possibly damaging	Het
Tjp2	A	G	19: 24,073,963 (GRCm39)	L1108P	probably benign	Het
Tmem150c	C	A	5: 100,243,524 (GRCm39)	V8L	probably benign	Het
Ttn	A	T	2: 76,746,789 (GRCm39)	H4753Q	probably benign	Het
Tyw1	T	A	5: 130,354,540 (GRCm39)	I589N	probably damaging	Het
Usp40	C	T	1: 87,927,592 (GRCm39)	R139Q	probably damaging	Het
Zgrf1	A	G	3: 127,378,414 (GRCm39)	Y174C	probably damaging	Het

Other mutations in Tfg

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01402:Tfg	APN	16	56,514,856 (GRCm39)	splice site	probably benign
IGL01404:Tfg	APN	16	56,514,856 (GRCm39)	splice site	probably benign
IGL01548:Tfg	APN	16	56,521,465 (GRCm39)	missense	probably damaging	1.00
trafalgar	UTSW	16	56,532,997 (GRCm39)	missense	possibly damaging	0.90
R0003:Tfg	UTSW	16	56,511,351 (GRCm39)	missense	possibly damaging	0.96
R0003:Tfg	UTSW	16	56,511,351 (GRCm39)	missense	possibly damaging	0.96
R0036:Tfg	UTSW	16	56,511,358 (GRCm39)	missense	probably benign	0.18
R1730:Tfg	UTSW	16	56,533,152 (GRCm39)	missense	probably damaging	1.00
R2025:Tfg	UTSW	16	56,525,988 (GRCm39)	missense	possibly damaging	0.65
R4629:Tfg	UTSW	16	56,533,039 (GRCm39)	missense	probably damaging	1.00
R4676:Tfg	UTSW	16	56,514,854 (GRCm39)	splice site	probably null
R4879:Tfg	UTSW	16	56,521,520 (GRCm39)	missense	probably damaging	1.00
R4916:Tfg	UTSW	16	56,514,759 (GRCm39)	splice site	probably null
R5237:Tfg	UTSW	16	56,533,071 (GRCm39)	missense	possibly damaging	0.80
R5568:Tfg	UTSW	16	56,521,450 (GRCm39)	missense	probably benign	0.14
R5698:Tfg	UTSW	16	56,521,467 (GRCm39)	missense	probably damaging	0.98
R7213:Tfg	UTSW	16	56,521,516 (GRCm39)	missense	probably benign	0.03
R7392:Tfg	UTSW	16	56,532,972 (GRCm39)	critical splice donor site	probably null
R7514:Tfg	UTSW	16	56,525,972 (GRCm39)	critical splice donor site	probably null
R7632:Tfg	UTSW	16	56,532,997 (GRCm39)	missense	possibly damaging	0.90
R8304:Tfg	UTSW	16	56,521,581 (GRCm39)	missense	possibly damaging	0.87
R9254:Tfg	UTSW	16	56,526,050 (GRCm39)	missense	probably damaging	1.00
R9432:Tfg	UTSW	16	56,524,868 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- TCTCAATTTGAAGTCACCTAAGAGG -3'
(R):5'- GTAGCCGAGCAAGCAATCAC -3'

Sequencing Primer
(F):5'- AACACTTCCGACAGTGTG -3'
(R):5'- GCCGAGCAAGCAATCACCTTTAAG -3'

Posted On

2017-02-15