Incidental Mutation 'R5889:Edc4'
ID |
456225 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Edc4
|
Ensembl Gene |
ENSMUSG00000036270 |
Gene Name |
enhancer of mRNA decapping 4 |
Synonyms |
|
MMRRC Submission |
044090-MU
|
Accession Numbers |
|
Essential gene? |
Essential
(E-score: 1.000)
|
Stock # |
R5889 (G1)
|
Quality Score |
225 |
Status
|
Validated
|
Chromosome |
8 |
Chromosomal Location |
106607506-106619857 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
C to T
at 106614654 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Threonine to Isoleucine
at position 112
(T112I)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000118162
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000040254]
[ENSMUST00000119261]
[ENSMUST00000136048]
[ENSMUST00000145618]
|
AlphaFold |
no structure available at present |
Predicted Effect |
probably benign
Transcript: ENSMUST00000040254
AA Change: T537I
PolyPhen 2
Score 0.055 (Sensitivity: 0.94; Specificity: 0.84)
|
SMART Domains |
Protein: ENSMUSP00000039134 Gene: ENSMUSG00000036270 AA Change: T537I
Domain | Start | End | E-Value | Type |
Blast:WD40
|
33 |
93 |
1e-7 |
BLAST |
low complexity region
|
103 |
110 |
N/A |
INTRINSIC |
WD40
|
165 |
205 |
1.99e0 |
SMART |
low complexity region
|
243 |
253 |
N/A |
INTRINSIC |
WD40
|
286 |
325 |
1.38e-2 |
SMART |
WD40
|
333 |
384 |
2.3e0 |
SMART |
low complexity region
|
609 |
644 |
N/A |
INTRINSIC |
low complexity region
|
664 |
692 |
N/A |
INTRINSIC |
low complexity region
|
773 |
785 |
N/A |
INTRINSIC |
low complexity region
|
794 |
808 |
N/A |
INTRINSIC |
low complexity region
|
891 |
902 |
N/A |
INTRINSIC |
coiled coil region
|
1001 |
1030 |
N/A |
INTRINSIC |
low complexity region
|
1267 |
1285 |
N/A |
INTRINSIC |
PDB:2VXG|B
|
1286 |
1402 |
3e-18 |
PDB |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000119261
AA Change: T537I
PolyPhen 2
Score 0.026 (Sensitivity: 0.95; Specificity: 0.81)
|
SMART Domains |
Protein: ENSMUSP00000113854 Gene: ENSMUSG00000036270 AA Change: T537I
Domain | Start | End | E-Value | Type |
Blast:WD40
|
33 |
93 |
1e-7 |
BLAST |
low complexity region
|
103 |
110 |
N/A |
INTRINSIC |
WD40
|
165 |
205 |
1.99e0 |
SMART |
low complexity region
|
243 |
253 |
N/A |
INTRINSIC |
WD40
|
286 |
325 |
1.38e-2 |
SMART |
WD40
|
333 |
384 |
2.3e0 |
SMART |
low complexity region
|
609 |
644 |
N/A |
INTRINSIC |
low complexity region
|
664 |
692 |
N/A |
INTRINSIC |
low complexity region
|
773 |
785 |
N/A |
INTRINSIC |
low complexity region
|
794 |
808 |
N/A |
INTRINSIC |
low complexity region
|
875 |
886 |
N/A |
INTRINSIC |
coiled coil region
|
985 |
1014 |
N/A |
INTRINSIC |
low complexity region
|
1251 |
1269 |
N/A |
INTRINSIC |
PDB:2VXG|B
|
1270 |
1386 |
3e-18 |
PDB |
|
Predicted Effect |
unknown
Transcript: ENSMUST00000132680
AA Change: T116I
|
SMART Domains |
Protein: ENSMUSP00000114209 Gene: ENSMUSG00000036270 AA Change: T116I
Domain | Start | End | E-Value | Type |
low complexity region
|
189 |
224 |
N/A |
INTRINSIC |
low complexity region
|
245 |
273 |
N/A |
INTRINSIC |
low complexity region
|
354 |
366 |
N/A |
INTRINSIC |
low complexity region
|
375 |
389 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000136048
AA Change: T477I
PolyPhen 2
Score 0.018 (Sensitivity: 0.95; Specificity: 0.80)
|
SMART Domains |
Protein: ENSMUSP00000114285 Gene: ENSMUSG00000036270 AA Change: T477I
Domain | Start | End | E-Value | Type |
Blast:WD40
|
33 |
93 |
9e-8 |
BLAST |
low complexity region
|
103 |
110 |
N/A |
INTRINSIC |
WD40
|
165 |
205 |
1.99e0 |
SMART |
low complexity region
|
243 |
253 |
N/A |
INTRINSIC |
WD40
|
286 |
325 |
1.38e-2 |
SMART |
low complexity region
|
549 |
584 |
N/A |
INTRINSIC |
low complexity region
|
604 |
632 |
N/A |
INTRINSIC |
low complexity region
|
713 |
725 |
N/A |
INTRINSIC |
low complexity region
|
734 |
748 |
N/A |
INTRINSIC |
low complexity region
|
829 |
840 |
N/A |
INTRINSIC |
low complexity region
|
961 |
990 |
N/A |
INTRINSIC |
low complexity region
|
1215 |
1233 |
N/A |
INTRINSIC |
PDB:2VXG|B
|
1234 |
1317 |
1e-14 |
PDB |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000139154
|
Predicted Effect |
possibly damaging
Transcript: ENSMUST00000145618
AA Change: T112I
PolyPhen 2
Score 0.865 (Sensitivity: 0.83; Specificity: 0.93)
|
SMART Domains |
Protein: ENSMUSP00000118162 Gene: ENSMUSG00000036270 AA Change: T112I
Domain | Start | End | E-Value | Type |
low complexity region
|
185 |
220 |
N/A |
INTRINSIC |
low complexity region
|
240 |
261 |
N/A |
INTRINSIC |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000156357
|
Meta Mutation Damage Score |
0.0872 |
Coding Region Coverage |
- 1x: 99.9%
- 3x: 99.5%
- 10x: 97.6%
- 20x: 92.3%
|
Validation Efficiency |
100% (63/63) |
MGI Phenotype |
FUNCTION: The protein encoded by this gene is thought to promote mRNA decay, and is known to interact with several mRNA decapping proteins. In humans, decreased expression of this gene prevents the accumulation of mRNA decapping proteins to mRNA processing bodies (P-body). Alternative splicing results in multiple protein isoforms. [provided by RefSeq, Jul 2014]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 57 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
4930568D16Rik |
T |
C |
2: 35,244,461 (GRCm39) |
E297G |
probably damaging |
Het |
Astn1 |
C |
T |
1: 158,427,950 (GRCm39) |
P707L |
possibly damaging |
Het |
Cep290 |
T |
C |
10: 100,334,936 (GRCm39) |
S319P |
possibly damaging |
Het |
Chrna4 |
A |
C |
2: 180,670,451 (GRCm39) |
L435W |
probably damaging |
Het |
Cilp |
C |
A |
9: 65,187,625 (GRCm39) |
A1240D |
possibly damaging |
Het |
Col17a1 |
A |
G |
19: 47,637,511 (GRCm39) |
F1249S |
possibly damaging |
Het |
Creb3l3 |
T |
C |
10: 80,928,367 (GRCm39) |
|
probably benign |
Het |
Cyp4f40 |
C |
A |
17: 32,894,731 (GRCm39) |
T432N |
probably benign |
Het |
Dsg1c |
T |
G |
18: 20,416,658 (GRCm39) |
I853R |
possibly damaging |
Het |
Ebna1bp2 |
T |
A |
4: 118,478,620 (GRCm39) |
D34E |
probably damaging |
Het |
Enpep |
T |
A |
3: 129,106,227 (GRCm39) |
Y333F |
probably damaging |
Het |
Exoc6 |
A |
G |
19: 37,570,693 (GRCm39) |
H291R |
probably damaging |
Het |
Fbln5 |
G |
T |
12: 101,731,485 (GRCm39) |
N236K |
probably damaging |
Het |
Fndc8 |
A |
T |
11: 82,789,555 (GRCm39) |
T238S |
probably damaging |
Het |
Frem3 |
T |
C |
8: 81,340,917 (GRCm39) |
V1070A |
probably damaging |
Het |
Gabra4 |
A |
T |
5: 71,729,234 (GRCm39) |
N515K |
possibly damaging |
Het |
Gemin5 |
A |
G |
11: 58,013,181 (GRCm39) |
V1422A |
possibly damaging |
Het |
Gm10118 |
A |
G |
10: 63,762,890 (GRCm39) |
|
probably benign |
Het |
Grm5 |
A |
G |
7: 87,252,281 (GRCm39) |
D177G |
probably damaging |
Het |
Gtf2h4 |
G |
A |
17: 35,981,792 (GRCm39) |
P147L |
possibly damaging |
Het |
Hgsnat |
T |
C |
8: 26,453,395 (GRCm39) |
D265G |
probably damaging |
Het |
Hsd17b4 |
T |
A |
18: 50,310,276 (GRCm39) |
L513Q |
probably damaging |
Het |
Hsd17b7 |
A |
T |
1: 169,783,487 (GRCm39) |
M307K |
probably benign |
Het |
Hspa5 |
T |
C |
2: 34,664,629 (GRCm39) |
V361A |
probably damaging |
Het |
Iqgap2 |
A |
G |
13: 95,768,550 (GRCm39) |
V1450A |
probably benign |
Het |
Itpr3 |
A |
G |
17: 27,334,039 (GRCm39) |
E2037G |
probably damaging |
Het |
Itprid2 |
T |
A |
2: 79,488,072 (GRCm39) |
D718E |
probably damaging |
Het |
Lama5 |
T |
C |
2: 179,835,467 (GRCm39) |
|
probably benign |
Het |
Manba |
G |
T |
3: 135,230,359 (GRCm39) |
G311* |
probably null |
Het |
Mettl24 |
T |
A |
10: 40,622,486 (GRCm39) |
V236E |
probably benign |
Het |
Myh3 |
A |
G |
11: 66,977,201 (GRCm39) |
D310G |
probably damaging |
Het |
Ncoa4 |
A |
T |
14: 31,888,616 (GRCm39) |
|
probably benign |
Het |
Nop56 |
G |
T |
2: 130,117,902 (GRCm39) |
R126L |
probably damaging |
Het |
Nos3 |
C |
A |
5: 24,573,775 (GRCm39) |
|
probably benign |
Het |
Or13c7b |
T |
C |
4: 43,820,492 (GRCm39) |
M290V |
possibly damaging |
Het |
Pcdhga3 |
T |
A |
18: 37,809,662 (GRCm39) |
V705D |
probably damaging |
Het |
Prom2 |
C |
T |
2: 127,371,331 (GRCm39) |
A776T |
possibly damaging |
Het |
Prss48 |
A |
G |
3: 85,905,492 (GRCm39) |
I127T |
probably damaging |
Het |
Rtca |
T |
C |
3: 116,293,232 (GRCm39) |
Y193C |
possibly damaging |
Het |
Samd9l |
T |
C |
6: 3,376,460 (GRCm39) |
Y267C |
probably damaging |
Het |
Scube3 |
A |
G |
17: 28,379,887 (GRCm39) |
R272G |
possibly damaging |
Het |
Sprr1a |
G |
T |
3: 92,391,951 (GRCm39) |
H17N |
probably benign |
Het |
Stard3 |
G |
C |
11: 98,266,361 (GRCm39) |
Q120H |
probably benign |
Het |
Supt6 |
A |
G |
11: 78,103,574 (GRCm39) |
I1377T |
probably damaging |
Het |
Svop |
A |
T |
5: 114,203,692 (GRCm39) |
S30T |
probably benign |
Het |
Syne2 |
T |
A |
12: 76,119,026 (GRCm39) |
L5882* |
probably null |
Het |
Tanc2 |
G |
T |
11: 105,812,633 (GRCm39) |
R1359L |
probably benign |
Het |
Tmc7 |
A |
C |
7: 118,165,549 (GRCm39) |
L55R |
probably benign |
Het |
Trappc11 |
G |
A |
8: 47,972,613 (GRCm39) |
A320V |
probably benign |
Het |
Ttll8 |
G |
C |
15: 88,818,142 (GRCm39) |
P178A |
probably damaging |
Het |
Ttn |
T |
C |
2: 76,560,993 (GRCm39) |
E20809G |
probably damaging |
Het |
Tubb2a |
A |
T |
13: 34,259,451 (GRCm39) |
V113E |
possibly damaging |
Het |
Ube2d1 |
A |
T |
10: 71,095,699 (GRCm39) |
|
probably benign |
Het |
Usp48 |
T |
C |
4: 137,343,723 (GRCm39) |
V452A |
probably benign |
Het |
Vldlr |
T |
A |
19: 27,217,064 (GRCm39) |
I39N |
probably damaging |
Het |
Wbp1l |
C |
T |
19: 46,642,619 (GRCm39) |
R191* |
probably null |
Het |
Zyg11b |
C |
T |
4: 108,094,577 (GRCm39) |
W669* |
probably null |
Het |
|
Other mutations in Edc4 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00898:Edc4
|
APN |
8 |
106,607,755 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01069:Edc4
|
APN |
8 |
106,613,766 (GRCm39) |
missense |
probably benign |
0.35 |
IGL01470:Edc4
|
APN |
8 |
106,616,613 (GRCm39) |
unclassified |
probably benign |
|
IGL01656:Edc4
|
APN |
8 |
106,613,009 (GRCm39) |
missense |
possibly damaging |
0.55 |
IGL01804:Edc4
|
APN |
8 |
106,617,289 (GRCm39) |
missense |
possibly damaging |
0.92 |
IGL02135:Edc4
|
APN |
8 |
106,612,454 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02825:Edc4
|
APN |
8 |
106,617,243 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03036:Edc4
|
APN |
8 |
106,613,943 (GRCm39) |
splice site |
probably null |
|
IGL03401:Edc4
|
APN |
8 |
106,614,146 (GRCm39) |
nonsense |
probably null |
|
IGL03409:Edc4
|
APN |
8 |
106,611,748 (GRCm39) |
missense |
probably damaging |
1.00 |
Armor
|
UTSW |
8 |
106,617,499 (GRCm39) |
missense |
probably damaging |
1.00 |
crossbow
|
UTSW |
8 |
106,617,051 (GRCm39) |
critical splice donor site |
probably null |
|
mail
|
UTSW |
8 |
106,612,941 (GRCm39) |
splice site |
probably null |
|
Post
|
UTSW |
8 |
106,614,146 (GRCm39) |
nonsense |
probably null |
|
sling
|
UTSW |
8 |
106,612,478 (GRCm39) |
missense |
probably damaging |
1.00 |
R0362:Edc4
|
UTSW |
8 |
106,613,407 (GRCm39) |
missense |
probably damaging |
1.00 |
R0541:Edc4
|
UTSW |
8 |
106,616,060 (GRCm39) |
missense |
probably benign |
0.00 |
R0614:Edc4
|
UTSW |
8 |
106,616,028 (GRCm39) |
missense |
possibly damaging |
0.93 |
R0631:Edc4
|
UTSW |
8 |
106,617,424 (GRCm39) |
missense |
possibly damaging |
0.57 |
R1067:Edc4
|
UTSW |
8 |
106,617,637 (GRCm39) |
missense |
probably damaging |
0.97 |
R1270:Edc4
|
UTSW |
8 |
106,617,896 (GRCm39) |
missense |
possibly damaging |
0.90 |
R1371:Edc4
|
UTSW |
8 |
106,617,382 (GRCm39) |
unclassified |
probably benign |
|
R1384:Edc4
|
UTSW |
8 |
106,619,014 (GRCm39) |
missense |
probably damaging |
1.00 |
R1417:Edc4
|
UTSW |
8 |
106,614,487 (GRCm39) |
critical splice donor site |
probably null |
|
R1423:Edc4
|
UTSW |
8 |
106,617,843 (GRCm39) |
unclassified |
probably benign |
|
R1446:Edc4
|
UTSW |
8 |
106,614,764 (GRCm39) |
missense |
probably damaging |
0.96 |
R1472:Edc4
|
UTSW |
8 |
106,619,460 (GRCm39) |
missense |
probably damaging |
0.99 |
R1797:Edc4
|
UTSW |
8 |
106,617,717 (GRCm39) |
missense |
probably benign |
0.03 |
R2086:Edc4
|
UTSW |
8 |
106,614,634 (GRCm39) |
missense |
probably damaging |
1.00 |
R2092:Edc4
|
UTSW |
8 |
106,614,160 (GRCm39) |
missense |
probably damaging |
1.00 |
R3079:Edc4
|
UTSW |
8 |
106,611,750 (GRCm39) |
missense |
possibly damaging |
0.86 |
R3551:Edc4
|
UTSW |
8 |
106,612,126 (GRCm39) |
missense |
probably damaging |
1.00 |
R4492:Edc4
|
UTSW |
8 |
106,611,700 (GRCm39) |
frame shift |
probably null |
|
R4650:Edc4
|
UTSW |
8 |
106,619,307 (GRCm39) |
nonsense |
probably null |
|
R4735:Edc4
|
UTSW |
8 |
106,613,818 (GRCm39) |
missense |
probably damaging |
1.00 |
R4854:Edc4
|
UTSW |
8 |
106,614,557 (GRCm39) |
intron |
probably benign |
|
R5530:Edc4
|
UTSW |
8 |
106,615,886 (GRCm39) |
nonsense |
probably null |
|
R5851:Edc4
|
UTSW |
8 |
106,617,499 (GRCm39) |
missense |
probably damaging |
1.00 |
R5903:Edc4
|
UTSW |
8 |
106,617,219 (GRCm39) |
missense |
probably benign |
0.04 |
R5996:Edc4
|
UTSW |
8 |
106,614,033 (GRCm39) |
missense |
probably damaging |
1.00 |
R6078:Edc4
|
UTSW |
8 |
106,614,180 (GRCm39) |
missense |
probably benign |
0.01 |
R6079:Edc4
|
UTSW |
8 |
106,614,180 (GRCm39) |
missense |
probably benign |
0.01 |
R6143:Edc4
|
UTSW |
8 |
106,612,506 (GRCm39) |
missense |
probably damaging |
1.00 |
R7072:Edc4
|
UTSW |
8 |
106,614,634 (GRCm39) |
missense |
probably damaging |
1.00 |
R7211:Edc4
|
UTSW |
8 |
106,612,941 (GRCm39) |
splice site |
probably null |
|
R7368:Edc4
|
UTSW |
8 |
106,615,037 (GRCm39) |
small deletion |
probably benign |
|
R7429:Edc4
|
UTSW |
8 |
106,618,216 (GRCm39) |
missense |
probably damaging |
1.00 |
R7430:Edc4
|
UTSW |
8 |
106,618,216 (GRCm39) |
missense |
probably damaging |
1.00 |
R7787:Edc4
|
UTSW |
8 |
106,614,146 (GRCm39) |
nonsense |
probably null |
|
R8056:Edc4
|
UTSW |
8 |
106,617,116 (GRCm39) |
unclassified |
probably benign |
|
R8236:Edc4
|
UTSW |
8 |
106,618,905 (GRCm39) |
missense |
possibly damaging |
0.83 |
R8388:Edc4
|
UTSW |
8 |
106,614,139 (GRCm39) |
missense |
probably damaging |
1.00 |
R8529:Edc4
|
UTSW |
8 |
106,611,682 (GRCm39) |
missense |
probably damaging |
1.00 |
R8776:Edc4
|
UTSW |
8 |
106,613,992 (GRCm39) |
missense |
probably damaging |
1.00 |
R8776-TAIL:Edc4
|
UTSW |
8 |
106,613,992 (GRCm39) |
missense |
probably damaging |
1.00 |
R8900:Edc4
|
UTSW |
8 |
106,617,857 (GRCm39) |
missense |
probably damaging |
1.00 |
R9032:Edc4
|
UTSW |
8 |
106,613,639 (GRCm39) |
missense |
probably damaging |
1.00 |
R9051:Edc4
|
UTSW |
8 |
106,613,833 (GRCm39) |
missense |
probably damaging |
1.00 |
R9133:Edc4
|
UTSW |
8 |
106,611,778 (GRCm39) |
critical splice donor site |
probably null |
|
R9147:Edc4
|
UTSW |
8 |
106,612,478 (GRCm39) |
missense |
probably damaging |
1.00 |
R9200:Edc4
|
UTSW |
8 |
106,617,051 (GRCm39) |
critical splice donor site |
probably null |
|
R9556:Edc4
|
UTSW |
8 |
106,615,067 (GRCm39) |
small deletion |
probably benign |
|
RF009:Edc4
|
UTSW |
8 |
106,615,812 (GRCm39) |
missense |
probably benign |
0.27 |
RF014:Edc4
|
UTSW |
8 |
106,611,232 (GRCm39) |
missense |
probably benign |
|
U15987:Edc4
|
UTSW |
8 |
106,614,180 (GRCm39) |
missense |
probably benign |
0.01 |
X0018:Edc4
|
UTSW |
8 |
106,613,633 (GRCm39) |
missense |
probably damaging |
1.00 |
X0063:Edc4
|
UTSW |
8 |
106,611,212 (GRCm39) |
missense |
probably benign |
0.09 |
|
Predicted Primers |
PCR Primer
(F):5'- TAAGTGAGTGTCAGGCAGGC -3'
(R):5'- TTGGTCTCACTGCTCAGACTG -3'
Sequencing Primer
(F):5'- AGGCCTGCCATGTCCTGTC -3'
(R):5'- TCTCACTGCTCAGACTGAGGAAG -3'
|
Posted On |
2017-02-15 |