Mutagenetix > Incidental Mutation

Incidental Mutation 'R5898:Bicd1'

457651

Institutional Source

Beutler Lab

Gene Symbol

Bicd1

Ensembl Gene

ENSMUSG00000003452

Gene Name

BICD cargo adaptor 1

Synonyms

B830009D06Rik

MMRRC Submission

044097-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R5898 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

149310384-149464827 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 149415201 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Leucine at position 638 (H638L)

Ref Sequence

ENSEMBL: ENSMUSP00000133727 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000003544] [ENSMUST00000086829] [ENSMUST00000111513] [ENSMUST00000172926] [ENSMUST00000173408]

AlphaFold

Q8BR07

Predicted Effect

probably damaging
Transcript: ENSMUST00000003544
AA Change: H638L

PolyPhen 2 Score 0.975 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000003544
Gene: ENSMUSG00000003452
AA Change: H638L

Domain	Start	End	E-Value	Type
low complexity region	14	32	N/A	INTRINSIC
Pfam:BicD	74	799	N/A	PFAM
low complexity region	807	820	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000086829
AA Change: H638L

PolyPhen 2 Score 0.817 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000084039
Gene: ENSMUSG00000003452
AA Change: H638L

Domain	Start	End	E-Value	Type
low complexity region	14	32	N/A	INTRINSIC
Pfam:BicD	74	799	N/A	PFAM
low complexity region	807	820	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000111513
AA Change: H638L

PolyPhen 2 Score 0.817 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000107138
Gene: ENSMUSG00000003452
AA Change: H638L

Domain	Start	End	E-Value	Type
low complexity region	14	32	N/A	INTRINSIC
Pfam:BicD	74	799	N/A	PFAM
low complexity region	807	822	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000172926

SMART Domains

Protein: ENSMUSP00000133986
Gene: ENSMUSG00000003452

Domain	Start	End	E-Value	Type
Pfam:BicD	1	98	1.2e-69	PFAM
low complexity region	103	120	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000173408
AA Change: H638L

PolyPhen 2 Score 0.991 (Sensitivity: 0.71; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000133727
Gene: ENSMUSG00000003452
AA Change: H638L

Domain	Start	End	E-Value	Type
low complexity region	14	32	N/A	INTRINSIC
Pfam:BicD	74	799	N/A	PFAM
low complexity region	807	820	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000174886

Meta Mutation Damage Score

0.7413

Coding Region Coverage

1x: 99.9%
3x: 99.5%
10x: 97.9%
20x: 93.8%

Validation Efficiency

96% (86/90)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is one of two human homologs of Drosophila bicaudal-D. It has been implicated in COPI-independent membrane transport from the Golgi apparatus to the endoplasmic reticulum. Two alternative splice variants have been described. Other alternative splice variants that encode different protein isoforms have been described but their full-length nature has not been determined. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 83 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700017N19Rik	G	T	10: 100,448,762 (GRCm39)	R158L	possibly damaging	Het
1700017N19Rik	G	A	10: 100,451,070 (GRCm39)	M179I	probably benign	Het
Abhd12	T	C	2: 150,681,698 (GRCm39)	I231V	possibly damaging	Het
Adsl	A	G	15: 80,845,554 (GRCm39)		probably null	Het
Ahnak	C	A	19: 8,991,131 (GRCm39)	N4138K	possibly damaging	Het
Ahnak	T	C	19: 8,995,575 (GRCm39)	S5620P	probably damaging	Het
Akap13	C	T	7: 75,378,894 (GRCm39)	T2145I	probably damaging	Het
Alpk2	T	A	18: 65,440,694 (GRCm39)	Q700L	probably damaging	Het
Apobec1	T	C	6: 122,557,732 (GRCm39)	Y159C	probably damaging	Het
Atg9a	T	C	1: 75,162,916 (GRCm39)	T395A	probably damaging	Het
Atp6v1f	A	G	6: 29,467,957 (GRCm39)	I48V	probably benign	Het
BC051665	A	C	13: 60,930,518 (GRCm39)	V278G	probably damaging	Het
Cacna2d4	A	G	6: 119,251,192 (GRCm39)	Y460C	probably damaging	Het
Ccdc157	C	A	11: 4,094,538 (GRCm39)	R496L	probably benign	Het
Cdcp3	T	G	7: 130,843,696 (GRCm39)		probably null	Het
Cep44	C	G	8: 56,994,056 (GRCm39)	V174L	probably damaging	Het
Clca3a1	G	T	3: 144,722,522 (GRCm39)	F283L	possibly damaging	Het
Csk	T	C	9: 57,537,585 (GRCm39)	T110A	probably benign	Het
Cspg4	T	A	9: 56,792,506 (GRCm39)		probably null	Het
Cutc	A	G	19: 43,748,468 (GRCm39)	I124V	probably benign	Het
Cyp2d9	A	G	15: 82,339,725 (GRCm39)	T104A	probably benign	Het
Cyp2j9	G	T	4: 96,465,951 (GRCm39)	T294K	probably benign	Het
D630003M21Rik	T	A	2: 158,046,577 (GRCm39)		probably null	Het
Dcaf15	G	T	8: 84,825,081 (GRCm39)	F450L	probably damaging	Het
Ddhd1	A	T	14: 45,840,125 (GRCm39)	I723K	probably damaging	Het
Dnah17	C	T	11: 118,005,039 (GRCm39)	A782T	probably benign	Het
Dnah3	T	C	7: 119,677,724 (GRCm39)	D399G	probably benign	Het
Dync2h1	T	C	9: 7,148,717 (GRCm39)	N909S	probably benign	Het
Erbin	A	G	13: 103,975,813 (GRCm39)		probably null	Het
Fanci	G	A	7: 79,083,069 (GRCm39)	V682I	probably benign	Het
Fap	A	T	2: 62,403,847 (GRCm39)	F9L	probably benign	Het
Fat3	T	C	9: 15,849,757 (GRCm39)	I3882V	probably benign	Het
Fkbp15	A	T	4: 62,244,294 (GRCm39)		probably null	Het
Fsd2	T	C	7: 81,186,975 (GRCm39)	Y601C	probably damaging	Het
Gm5900	T	C	7: 104,599,468 (GRCm39)		noncoding transcript	Het
Gramd4	G	T	15: 85,984,985 (GRCm39)	G82V	probably damaging	Het
Hc	C	T	2: 34,887,449 (GRCm39)	V1352I	probably benign	Het
Hsph1	A	T	5: 149,548,623 (GRCm39)	N466K	probably damaging	Het
Ice2	T	A	9: 69,315,544 (GRCm39)	D133E	probably benign	Het
Ifi213	T	C	1: 173,396,545 (GRCm39)	M510V	probably benign	Het
Itpkb	T	G	1: 180,248,880 (GRCm39)	L861R	probably damaging	Het
Kbtbd3	T	A	9: 4,330,476 (GRCm39)	D283E	probably damaging	Het
Man2a1	A	G	17: 64,932,375 (GRCm39)	K154R	probably benign	Het
Masp1	T	A	16: 23,310,677 (GRCm39)	I252F	probably damaging	Het
Megf11	G	T	9: 64,593,246 (GRCm39)	C586F	probably damaging	Het
Myh2	C	A	11: 67,083,545 (GRCm39)	A1476E	possibly damaging	Het
Myo18b	A	T	5: 112,950,196 (GRCm39)		probably null	Het
Naip6	A	T	13: 100,435,829 (GRCm39)	V898E	possibly damaging	Het
Nav1	T	C	1: 135,512,884 (GRCm39)	M59V	probably benign	Het
Nlrp3	A	T	11: 59,437,678 (GRCm39)	Y119F	probably benign	Het
Oxa1l	T	A	14: 54,600,758 (GRCm39)	I77N	possibly damaging	Het
Pcdhb8	T	A	18: 37,490,537 (GRCm39)	D738E	possibly damaging	Het
Pdia5	A	T	16: 35,243,335 (GRCm39)	W269R	probably damaging	Het
Peak1	T	A	9: 56,114,622 (GRCm39)	T1440S	probably benign	Het
Piezo1	A	G	8: 123,214,682 (GRCm39)	V1547A	probably benign	Het
Pkp1	T	C	1: 135,810,259 (GRCm39)	Y437C	probably damaging	Het
Pla2r1	T	C	2: 60,253,104 (GRCm39)	D1329G	probably damaging	Het
Ppip5k2	T	C	1: 97,671,887 (GRCm39)		probably benign	Het
Prrg4	C	T	2: 104,675,378 (GRCm39)	S75N	probably benign	Het
Psmb9	T	A	17: 34,401,266 (GRCm39)	I198F	probably damaging	Het
Rcbtb2	T	A	14: 73,399,405 (GRCm39)	L23*	probably null	Het
Sbno1	A	T	5: 124,524,854 (GRCm39)		probably benign	Het
Scn3a	T	C	2: 65,345,039 (GRCm39)	E483G	probably damaging	Het
Sdccag8	T	A	1: 176,652,388 (GRCm39)	D46E	probably benign	Het
Selenov	A	G	7: 27,987,579 (GRCm39)	F293L	probably damaging	Het
Septin2	A	C	1: 93,407,023 (GRCm39)	D20A	probably benign	Het
Shc1	T	A	3: 89,334,274 (GRCm39)	Y313*	probably null	Het
Siglec1	T	A	2: 130,915,553 (GRCm39)	Y1346F	probably damaging	Het
Slc22a5	T	A	11: 53,764,559 (GRCm39)	I296F	probably damaging	Het
Slc9c1	A	G	16: 45,365,123 (GRCm39)	N152S	probably damaging	Het
Smoc1	C	T	12: 81,151,531 (GRCm39)	R83*	probably null	Het
Ssx2ip	A	G	3: 146,133,586 (GRCm39)	D227G	possibly damaging	Het
Tbrg4	T	C	11: 6,567,372 (GRCm39)	D576G	probably damaging	Het
Tbx20	T	A	9: 24,670,155 (GRCm39)	Y226F	probably damaging	Het
Trav10d	G	T	14: 53,048,929 (GRCm39)	A107S	probably damaging	Het
Trim60	A	T	8: 65,453,016 (GRCm39)	L411*	probably null	Het
Ttbk2	A	T	2: 120,575,521 (GRCm39)	V1083D	probably benign	Het
Unc93a	T	A	17: 13,344,464 (GRCm39)	Q26L	probably damaging	Het
Usp14	T	A	18: 10,022,819 (GRCm39)	N65I	possibly damaging	Het
Vip	A	T	10: 5,593,988 (GRCm39)	S114C	probably damaging	Het
Vmn1r237	A	T	17: 21,534,813 (GRCm39)	I179F	probably damaging	Het
Wdr47	T	A	3: 108,545,201 (GRCm39)		probably null	Het
Zfp975	A	T	7: 42,311,963 (GRCm39)	C217S	probably damaging	Het

Other mutations in Bicd1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00163:Bicd1	APN	6	149,451,888 (GRCm39)	missense	possibly damaging	0.72
IGL02489:Bicd1	APN	6	149,414,535 (GRCm39)	missense	probably damaging	1.00
IGL02626:Bicd1	APN	6	149,311,054 (GRCm39)	missense	probably damaging	1.00
IGL02966:Bicd1	APN	6	149,385,494 (GRCm39)	missense	probably damaging	0.99
IGL03256:Bicd1	APN	6	149,415,083 (GRCm39)	missense	probably benign
R0123:Bicd1	UTSW	6	149,414,448 (GRCm39)	missense	probably benign	0.00
R0131:Bicd1	UTSW	6	149,414,445 (GRCm39)	missense	probably damaging	0.99
R0134:Bicd1	UTSW	6	149,414,448 (GRCm39)	missense	probably benign	0.00
R0225:Bicd1	UTSW	6	149,414,448 (GRCm39)	missense	probably benign	0.00
R0267:Bicd1	UTSW	6	149,418,540 (GRCm39)	missense	probably damaging	1.00
R0481:Bicd1	UTSW	6	149,413,389 (GRCm39)	missense	possibly damaging	0.90
R0560:Bicd1	UTSW	6	149,413,460 (GRCm39)	missense	probably benign	0.34
R0729:Bicd1	UTSW	6	149,414,412 (GRCm39)	missense	probably damaging	0.97
R0784:Bicd1	UTSW	6	149,414,861 (GRCm39)	missense	probably damaging	0.98
R1994:Bicd1	UTSW	6	149,415,050 (GRCm39)	missense	probably benign	0.00
R2221:Bicd1	UTSW	6	149,418,503 (GRCm39)	missense	probably damaging	0.98
R2762:Bicd1	UTSW	6	149,421,901 (GRCm39)	missense	probably damaging	0.99
R3428:Bicd1	UTSW	6	149,414,400 (GRCm39)	missense	probably damaging	1.00
R3805:Bicd1	UTSW	6	149,420,489 (GRCm39)	missense	probably damaging	1.00
R3806:Bicd1	UTSW	6	149,420,489 (GRCm39)	missense	probably damaging	1.00
R3807:Bicd1	UTSW	6	149,420,489 (GRCm39)	missense	probably damaging	1.00
R4694:Bicd1	UTSW	6	149,311,051 (GRCm39)	missense	probably damaging	1.00
R4822:Bicd1	UTSW	6	149,420,752 (GRCm39)	intron	probably benign
R4835:Bicd1	UTSW	6	149,385,588 (GRCm39)	missense	probably benign	0.00
R5157:Bicd1	UTSW	6	149,421,912 (GRCm39)	missense	probably benign	0.09
R5527:Bicd1	UTSW	6	149,396,134 (GRCm39)	missense	probably damaging	1.00
R5611:Bicd1	UTSW	6	149,414,954 (GRCm39)	nonsense	probably null
R5643:Bicd1	UTSW	6	149,421,901 (GRCm39)	missense	probably damaging	0.99
R5644:Bicd1	UTSW	6	149,421,901 (GRCm39)	missense	probably damaging	0.99
R5788:Bicd1	UTSW	6	149,385,498 (GRCm39)	missense	probably benign	0.39
R6222:Bicd1	UTSW	6	149,414,463 (GRCm39)	missense	probably damaging	1.00
R6227:Bicd1	UTSW	6	149,414,674 (GRCm39)	nonsense	probably null
R6522:Bicd1	UTSW	6	149,385,503 (GRCm39)	missense	probably benign
R6781:Bicd1	UTSW	6	149,414,664 (GRCm39)	missense	possibly damaging	0.86
R6812:Bicd1	UTSW	6	149,311,035 (GRCm39)	missense	probably damaging	1.00
R7010:Bicd1	UTSW	6	149,396,113 (GRCm39)	missense	probably damaging	1.00
R7203:Bicd1	UTSW	6	149,414,403 (GRCm39)	missense	possibly damaging	0.91
R7265:Bicd1	UTSW	6	149,415,374 (GRCm39)	missense	probably damaging	1.00
R7362:Bicd1	UTSW	6	149,385,591 (GRCm39)	missense	probably benign	0.13
R7526:Bicd1	UTSW	6	149,415,224 (GRCm39)	missense	possibly damaging	0.46
R7545:Bicd1	UTSW	6	149,414,990 (GRCm39)	missense	probably benign
R7581:Bicd1	UTSW	6	149,420,502 (GRCm39)	missense	probably damaging	1.00
R7589:Bicd1	UTSW	6	149,415,165 (GRCm39)	missense	possibly damaging	0.61
R7639:Bicd1	UTSW	6	149,414,502 (GRCm39)	missense	possibly damaging	0.92
R7715:Bicd1	UTSW	6	149,414,471 (GRCm39)	missense	probably benign	0.11
R8188:Bicd1	UTSW	6	149,451,854 (GRCm39)	missense	probably damaging	0.98
R8271:Bicd1	UTSW	6	149,414,633 (GRCm39)	missense	probably benign	0.00
R8338:Bicd1	UTSW	6	149,414,621 (GRCm39)	missense	probably benign	0.00
R8375:Bicd1	UTSW	6	149,421,989 (GRCm39)	missense	probably benign
R8696:Bicd1	UTSW	6	149,415,285 (GRCm39)	missense	probably damaging	1.00
R8770:Bicd1	UTSW	6	149,420,448 (GRCm39)	missense	probably damaging	1.00
R9116:Bicd1	UTSW	6	149,385,674 (GRCm39)	missense	probably benign	0.00
R9505:Bicd1	UTSW	6	149,385,522 (GRCm39)	missense	probably benign	0.02
R9513:Bicd1	UTSW	6	149,414,391 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TATCCAGGAGGGGTGTGTCATC -3'
(R):5'- GCTTTCAACACTGCCCTCAG -3'

Sequencing Primer
(F):5'- GTGTCATCCCCTGTAGAATCAAGG -3'
(R):5'- GCCCTCAGTGTCGCAATCTG -3'

Posted On

2017-02-15