Incidental Mutation 'R5888:Atp11b'
ID 457771
Institutional Source Beutler Lab
Gene Symbol Atp11b
Ensembl Gene ENSMUSG00000037400
Gene Name ATPase, class VI, type 11B
Synonyms 1110019I14Rik
MMRRC Submission 044089-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.216) question?
Stock # R5888 (G1)
Quality Score 225
Status Validated
Chromosome 3
Chromosomal Location 35808255-35910425 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 35891696 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Isoleucine to Threonine at position 1036 (I1036T)
Ref Sequence ENSEMBL: ENSMUSP00000029257 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000029257] [ENSMUST00000198599]
AlphaFold Q6DFW5
Predicted Effect probably benign
Transcript: ENSMUST00000029257
AA Change: I1036T

PolyPhen 2 Score 0.154 (Sensitivity: 0.92; Specificity: 0.87)
SMART Domains Protein: ENSMUSP00000029257
Gene: ENSMUSG00000037400
AA Change: I1036T

DomainStartEndE-ValueType
Pfam:PhoLip_ATPase_N 21 90 2.4e-24 PFAM
Pfam:E1-E2_ATPase 95 369 5.4e-13 PFAM
Pfam:Hydrolase 401 757 1.5e-10 PFAM
Pfam:HAD 404 829 5.9e-20 PFAM
Pfam:Cation_ATPase 492 605 7.1e-13 PFAM
Pfam:PhoLip_ATPase_C 846 1099 1.5e-76 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000196409
Predicted Effect noncoding transcript
Transcript: ENSMUST00000196700
Predicted Effect probably benign
Transcript: ENSMUST00000197764
Predicted Effect probably benign
Transcript: ENSMUST00000198599
AA Change: I836T

PolyPhen 2 Score 0.014 (Sensitivity: 0.96; Specificity: 0.79)
SMART Domains Protein: ENSMUSP00000142676
Gene: ENSMUSG00000037400
AA Change: I836T

DomainStartEndE-ValueType
low complexity region 90 107 N/A INTRINSIC
Pfam:Hydrolase 201 632 3e-17 PFAM
Pfam:HAD 204 629 4e-16 PFAM
Pfam:Hydrolase_like2 292 405 1.2e-13 PFAM
low complexity region 833 848 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000211902
Meta Mutation Damage Score 0.2760 question?
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 98.2%
  • 20x: 94.9%
Validation Efficiency 94% (96/102)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] P-type ATPases, such as ATP11B, are phosphorylated in their intermediate state and drive uphill transport of ions across membranes. Several subfamilies of P-type ATPases have been identified. One subfamily transports heavy metal ions, such as Cu(2+) or Cd(2+). Another subfamily transports non-heavy metal ions, such as H(+), Na(+), K(+), or Ca(+). A third subfamily transports amphipaths, such as phosphatidylserine.[supplied by OMIM, Feb 2005]
Allele List at MGI
Other mutations in this stock
Total: 92 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adcy1 T A 11: 7,089,095 (GRCm39) V503E possibly damaging Het
Alk C A 17: 72,181,938 (GRCm39) V1362L probably damaging Het
Ankrd55 T A 13: 112,492,453 (GRCm39) I208N possibly damaging Het
Asap2 T A 12: 21,268,191 (GRCm39) I319N probably damaging Het
B4gat1 T C 19: 5,089,560 (GRCm39) F186L probably benign Het
C3 T A 17: 57,521,831 (GRCm39) T1079S probably damaging Het
Cacul1 G T 19: 60,525,902 (GRCm39) T287K possibly damaging Het
Cbr3 G C 16: 93,487,614 (GRCm39) G266R probably damaging Het
Cd63 T A 10: 128,748,160 (GRCm39) probably null Het
Chd7 G A 4: 8,866,382 (GRCm39) M851I probably damaging Het
Chst13 T A 6: 90,286,554 (GRCm39) H136L probably benign Het
Cyp2d22 T C 15: 82,258,014 (GRCm39) T179A probably benign Het
Dclre1b A T 3: 103,711,053 (GRCm39) V286E probably damaging Het
Defb45 G A 2: 152,435,154 (GRCm39) probably benign Het
Dlg1 T C 16: 31,610,704 (GRCm39) probably null Het
Dock3 A G 9: 106,901,002 (GRCm39) V321A probably benign Het
Dytn A T 1: 63,716,396 (GRCm39) V59E possibly damaging Het
Efcab3 T C 11: 104,612,227 (GRCm39) probably benign Het
Eif2ak1 A G 5: 143,823,733 (GRCm39) I393M probably damaging Het
Fam83g A T 11: 61,593,420 (GRCm39) E318V probably benign Het
Fbxo34 T A 14: 47,767,176 (GRCm39) F179I probably damaging Het
Fmo5 T A 3: 97,549,041 (GRCm39) Y230N probably benign Het
Fzd9 T G 5: 135,278,317 (GRCm39) probably null Het
Gata2 T C 6: 88,177,722 (GRCm39) S251P probably benign Het
Gigyf1 A G 5: 137,523,959 (GRCm39) D1043G probably damaging Het
Gm10322 T A 10: 59,452,125 (GRCm39) S81T probably benign Het
Gm15517 A T 7: 43,910,066 (GRCm39) probably benign Het
Haus4 T C 14: 54,781,676 (GRCm39) T232A probably benign Het
Hgfac A T 5: 35,202,751 (GRCm39) H417L probably damaging Het
Iqgap2 T C 13: 95,772,118 (GRCm39) K1354E possibly damaging Het
Kcnk12 C A 17: 88,054,077 (GRCm39) R195L probably benign Het
Kcnn2 A T 18: 45,725,412 (GRCm39) I303F probably damaging Het
Kcnt1 T C 2: 25,798,122 (GRCm39) F879S probably damaging Het
Kndc1 T C 7: 139,475,133 (GRCm39) F11L probably benign Het
Kpna7 A G 5: 144,926,605 (GRCm39) F449S probably damaging Het
Krt77 G T 15: 101,773,888 (GRCm39) N255K probably benign Het
Lair1 A T 7: 4,013,844 (GRCm39) D134E probably damaging Het
Loxhd1 T C 18: 77,490,211 (GRCm39) V1318A probably damaging Het
Marchf10 A T 11: 105,292,972 (GRCm39) V145D possibly damaging Het
Mcpt1 T A 14: 56,256,969 (GRCm39) M169K probably benign Het
Mdc1 T A 17: 36,158,712 (GRCm39) V364E probably benign Het
Mfsd11 T C 11: 116,762,210 (GRCm39) F270S probably damaging Het
Mfsd4b2 T G 10: 39,798,031 (GRCm39) D108A probably benign Het
Mink1 A T 11: 70,500,885 (GRCm39) probably benign Het
Mmp25 T C 17: 23,850,048 (GRCm39) Y504C probably damaging Het
Ms4a13 C T 19: 11,168,870 (GRCm39) V52I probably benign Het
Msh4 C T 3: 153,573,360 (GRCm39) probably null Het
Muc5b T G 7: 141,412,158 (GRCm39) S1701R unknown Het
Naalad2 A T 9: 18,241,937 (GRCm39) S656T probably benign Het
Ncapd2 T C 6: 125,164,052 (GRCm39) Y64C probably damaging Het
Ncapg2 T A 12: 116,389,420 (GRCm39) S347T possibly damaging Het
Ndufb11b T C 15: 81,864,872 (GRCm39) S38P probably benign Het
Nipal4 T C 11: 46,042,166 (GRCm39) T172A probably damaging Het
Nrros T C 16: 31,961,905 (GRCm39) K652R probably benign Het
Nrxn3 G T 12: 89,478,855 (GRCm39) A983S possibly damaging Het
Or4a76 T A 2: 89,461,143 (GRCm39) Y33F probably damaging Het
Or4ac1-ps1 T C 2: 88,370,588 (GRCm39) noncoding transcript Het
Or4c115 T A 2: 88,928,269 (GRCm39) M1L probably damaging Het
Or4k77 T C 2: 111,199,088 (GRCm39) M37T probably benign Het
Or51m1 A G 7: 103,578,239 (GRCm39) T70A possibly damaging Het
Or8g24 A T 9: 38,989,263 (GRCm39) Y259* probably null Het
Or8k37 A C 2: 86,469,488 (GRCm39) L188R probably damaging Het
P2rx4 T A 5: 122,857,228 (GRCm39) S155T probably benign Het
P2rx4 T G 5: 122,865,271 (GRCm39) Y299D probably damaging Het
Pcsk6 A T 7: 65,693,372 (GRCm39) L7F probably null Het
Pdss2 T C 10: 43,097,793 (GRCm39) silent Het
Pfkl A G 10: 77,827,204 (GRCm39) V494A possibly damaging Het
Prep G T 10: 44,943,460 (GRCm39) D12Y possibly damaging Het
Prg4 A G 1: 150,328,101 (GRCm39) F188S probably damaging Het
Ripor3 T C 2: 167,839,207 (GRCm39) Y98C probably damaging Het
Rnf216 T A 5: 143,054,069 (GRCm39) probably null Het
Rnf24 A G 2: 131,164,165 (GRCm39) probably benign Het
Rps18-ps6 G A 13: 97,896,901 (GRCm39) R66* probably null Het
Scn3a A G 2: 65,327,742 (GRCm39) M916T probably benign Het
Scnm1 T C 3: 95,037,596 (GRCm39) I157V probably benign Het
Sh2b3 C G 5: 121,967,084 (GRCm39) R10P possibly damaging Het
Slc25a27 T C 17: 43,960,585 (GRCm39) D211G probably damaging Het
Slc36a4 A T 9: 15,638,324 (GRCm39) Y250F probably damaging Het
Slc4a1 T A 11: 102,247,351 (GRCm39) E448V probably damaging Het
Slit1 C A 19: 41,731,735 (GRCm39) C38F probably damaging Het
Spock3 T A 8: 63,808,334 (GRCm39) N410K unknown Het
Supt20 G T 3: 54,619,628 (GRCm39) W370L probably benign Het
Tas2r139 T A 6: 42,118,430 (GRCm39) N187K probably damaging Het
Tbc1d9b G A 11: 50,031,311 (GRCm39) V111I probably benign Het
Thsd7b T A 1: 130,138,057 (GRCm39) Y1578* probably null Het
Tln2 T A 9: 67,136,685 (GRCm39) I1267F probably damaging Het
Tnk2 G A 16: 32,490,185 (GRCm39) V363I probably damaging Het
Ttc32 A G 12: 9,085,870 (GRCm39) K139R possibly damaging Het
Vmn1r30 G C 6: 58,412,550 (GRCm39) T94S possibly damaging Het
Vmn1r90 G A 7: 14,295,780 (GRCm39) T106I probably damaging Het
Zfp677 T A 17: 21,618,520 (GRCm39) C526S probably damaging Het
Zfp831 T G 2: 174,485,420 (GRCm39) S32A probably benign Het
Other mutations in Atp11b
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00089:Atp11b APN 3 35,863,525 (GRCm39) splice site probably null
IGL00722:Atp11b APN 3 35,874,084 (GRCm39) missense probably damaging 1.00
IGL00725:Atp11b APN 3 35,881,222 (GRCm39) missense probably damaging 0.97
IGL01514:Atp11b APN 3 35,891,130 (GRCm39) missense probably damaging 1.00
IGL01532:Atp11b APN 3 35,903,651 (GRCm39) nonsense probably null
IGL01789:Atp11b APN 3 35,843,741 (GRCm39) missense possibly damaging 0.81
IGL01915:Atp11b APN 3 35,885,612 (GRCm39) missense probably damaging 1.00
IGL02009:Atp11b APN 3 35,868,301 (GRCm39) missense probably benign 0.07
IGL02049:Atp11b APN 3 35,854,642 (GRCm39) missense probably damaging 0.99
IGL02952:Atp11b APN 3 35,882,844 (GRCm39) missense probably damaging 1.00
IGL02991:Atp11b UTSW 3 35,881,140 (GRCm39) missense probably benign 0.00
R0044:Atp11b UTSW 3 35,866,401 (GRCm39) missense probably damaging 0.99
R0254:Atp11b UTSW 3 35,866,259 (GRCm39) missense possibly damaging 0.82
R0538:Atp11b UTSW 3 35,891,163 (GRCm39) missense probably damaging 1.00
R0541:Atp11b UTSW 3 35,861,093 (GRCm39) missense probably damaging 0.99
R0653:Atp11b UTSW 3 35,893,343 (GRCm39) missense probably damaging 0.99
R0790:Atp11b UTSW 3 35,887,072 (GRCm39) missense probably damaging 1.00
R1083:Atp11b UTSW 3 35,832,162 (GRCm39) splice site probably benign
R1371:Atp11b UTSW 3 35,860,918 (GRCm39) missense probably damaging 0.97
R1458:Atp11b UTSW 3 35,843,707 (GRCm39) missense probably damaging 1.00
R1875:Atp11b UTSW 3 35,893,296 (GRCm39) missense probably damaging 1.00
R1921:Atp11b UTSW 3 35,888,474 (GRCm39) missense probably damaging 1.00
R2008:Atp11b UTSW 3 35,909,271 (GRCm39) missense probably damaging 0.97
R2065:Atp11b UTSW 3 35,893,223 (GRCm39) missense probably damaging 1.00
R2112:Atp11b UTSW 3 35,891,677 (GRCm39) missense probably damaging 1.00
R2228:Atp11b UTSW 3 35,861,091 (GRCm39) missense probably damaging 1.00
R2270:Atp11b UTSW 3 35,864,283 (GRCm39) splice site probably null
R2273:Atp11b UTSW 3 35,882,762 (GRCm39) missense probably benign 0.04
R2439:Atp11b UTSW 3 35,868,233 (GRCm39) missense possibly damaging 0.68
R2497:Atp11b UTSW 3 35,909,294 (GRCm39) missense probably damaging 0.99
R4181:Atp11b UTSW 3 35,854,714 (GRCm39) missense probably benign 0.19
R4181:Atp11b UTSW 3 35,843,707 (GRCm39) missense probably damaging 1.00
R4714:Atp11b UTSW 3 35,888,543 (GRCm39) missense probably benign 0.02
R4923:Atp11b UTSW 3 35,889,528 (GRCm39) critical splice donor site probably null
R4937:Atp11b UTSW 3 35,861,157 (GRCm39) splice site probably null
R5013:Atp11b UTSW 3 35,888,532 (GRCm39) missense possibly damaging 0.66
R5058:Atp11b UTSW 3 35,863,510 (GRCm39) missense probably benign 0.41
R5171:Atp11b UTSW 3 35,887,086 (GRCm39) missense probably damaging 1.00
R5200:Atp11b UTSW 3 35,891,156 (GRCm39) missense probably benign 0.21
R5465:Atp11b UTSW 3 35,864,333 (GRCm39) missense probably benign 0.00
R5651:Atp11b UTSW 3 35,909,289 (GRCm39) missense probably damaging 1.00
R5689:Atp11b UTSW 3 35,888,501 (GRCm39) missense possibly damaging 0.67
R5718:Atp11b UTSW 3 35,891,665 (GRCm39) missense probably benign 0.12
R5807:Atp11b UTSW 3 35,866,428 (GRCm39) missense probably damaging 1.00
R6059:Atp11b UTSW 3 35,868,326 (GRCm39) missense possibly damaging 0.72
R6259:Atp11b UTSW 3 35,861,050 (GRCm39) missense probably damaging 1.00
R6359:Atp11b UTSW 3 35,832,210 (GRCm39) missense probably benign 0.04
R6367:Atp11b UTSW 3 35,838,686 (GRCm39) missense probably damaging 1.00
R6577:Atp11b UTSW 3 35,893,311 (GRCm39) missense probably damaging 0.99
R6818:Atp11b UTSW 3 35,868,329 (GRCm39) missense possibly damaging 0.71
R7016:Atp11b UTSW 3 35,895,185 (GRCm39) missense probably benign
R7178:Atp11b UTSW 3 35,874,099 (GRCm39) missense probably benign 0.34
R7614:Atp11b UTSW 3 35,864,259 (GRCm39) splice site probably null
R7729:Atp11b UTSW 3 35,832,256 (GRCm39) missense probably damaging 0.97
R7910:Atp11b UTSW 3 35,885,652 (GRCm39) missense possibly damaging 0.68
R7967:Atp11b UTSW 3 35,895,192 (GRCm39) missense probably benign 0.03
R8085:Atp11b UTSW 3 35,895,185 (GRCm39) missense probably benign
R8095:Atp11b UTSW 3 35,888,565 (GRCm39) missense probably damaging 1.00
R8499:Atp11b UTSW 3 35,864,854 (GRCm39) missense probably benign 0.01
R8672:Atp11b UTSW 3 35,874,066 (GRCm39) missense probably benign 0.19
R9046:Atp11b UTSW 3 35,852,740 (GRCm39) splice site probably benign
R9047:Atp11b UTSW 3 35,861,038 (GRCm39) missense probably damaging 0.98
R9065:Atp11b UTSW 3 35,887,131 (GRCm39) critical splice donor site probably null
R9713:Atp11b UTSW 3 35,885,560 (GRCm39) missense probably damaging 1.00
R9761:Atp11b UTSW 3 35,903,621 (GRCm39) missense probably benign 0.25
R9761:Atp11b UTSW 3 35,903,616 (GRCm39) missense probably damaging 1.00
R9761:Atp11b UTSW 3 35,903,607 (GRCm39) nonsense probably null
Z1088:Atp11b UTSW 3 35,866,362 (GRCm39) missense probably damaging 1.00
Z1177:Atp11b UTSW 3 35,861,003 (GRCm39) missense probably benign 0.17
Predicted Primers PCR Primer
(F):5'- TGATACTGTGTCTTCTATGGAACC -3'
(R):5'- TACCTTTATGACCAAGAGACTCAG -3'

Sequencing Primer
(F):5'- CAGTCCTCAGGGCTAAAAACAG -3'
(R):5'- GACCAAGAGACTCAGTTTTCATG -3'
Posted On 2017-02-15