Mutagenetix > Incidental Mutation

Incidental Mutation 'R0564:Phxr4'

46074

Institutional Source

Beutler Lab

Gene Symbol

Phxr4

Ensembl Gene

ENSMUSG00000031802

Gene Name

per-hexamer repeat gene 4

Synonyms

Sp5

MMRRC Submission

038755-MU

Accession Numbers

Essential gene?

Not available question?

Stock #

R0564 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

13342657-13344047 bp(+) (GRCm39)

Type of Mutation

intron

DNA Base Change (assembly)

A to T at 13342993 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000124083 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000159294]

AlphaFold

no structure available at present

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000071254

SMART Domains

Protein: ENSMUSP00000071235
Gene: ENSMUSG00000031802

Domain	Start	End	E-Value	Type
transmembrane domain	4	26	N/A	INTRINSIC
transmembrane domain	58	80	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000159294

SMART Domains

Protein: ENSMUSP00000124083
Gene: ENSMUSG00000031925

Domain	Start	End	E-Value	Type
low complexity region	227	245	N/A	INTRINSIC
low complexity region	313	331	N/A	INTRINSIC
SCOP:d1lsha3	385	459	5e-3	SMART
low complexity region	523	547	N/A	INTRINSIC
low complexity region	571	589	N/A	INTRINSIC
low complexity region	616	627	N/A	INTRINSIC
low complexity region	734	753	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000216590

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.7%
20x: 93.7%

Validation Efficiency

98% (52/53)

Allele List at MGI

Other mutations in this stock

Total: 51 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adamtsl5	A	G	10: 80,180,681 (GRCm39)	V127A	probably damaging	Het
Alox12	T	A	11: 70,143,662 (GRCm39)	D202V	probably damaging	Het
Ankib1	A	G	5: 3,779,655 (GRCm39)	Y405H	probably damaging	Het
Apbb2	A	T	5: 66,609,593 (GRCm39)	M18K	probably damaging	Het
Atad2	C	A	15: 57,989,229 (GRCm39)		probably benign	Het
Birc6	T	A	17: 74,932,238 (GRCm39)		probably benign	Het
Ccdc126	T	C	6: 49,311,076 (GRCm39)	M28T	possibly damaging	Het
Cdc16	A	T	8: 13,831,618 (GRCm39)	D617V	probably damaging	Het
Cep135	G	A	5: 76,763,557 (GRCm39)	E516K	probably damaging	Het
Cep135	G	T	5: 76,786,796 (GRCm39)	M1081I	probably benign	Het
Col6a3	A	C	1: 90,735,456 (GRCm39)	V731G	probably damaging	Het
Cstdc6	A	T	16: 36,143,346 (GRCm39)	Y34*	probably null	Het
Cwc27	C	A	13: 104,797,865 (GRCm39)	E365*	probably null	Het
Dip2b	C	A	15: 100,060,600 (GRCm39)	Y258*	probably null	Het
Dnah17	A	G	11: 117,973,807 (GRCm39)	V1900A	probably damaging	Het
Dpysl2	A	T	14: 67,042,895 (GRCm39)		probably benign	Het
Dync2h1	A	T	9: 7,139,432 (GRCm39)	L1401Q	probably damaging	Het
Esf1	A	T	2: 140,000,506 (GRCm39)	Y427N	possibly damaging	Het
Fbln1	T	A	15: 85,111,308 (GRCm39)	V154D	probably benign	Het
Frem2	A	G	3: 53,563,530 (GRCm39)	F326L	probably damaging	Het
Gm4922	T	A	10: 18,659,813 (GRCm39)	N303I	possibly damaging	Het
H1f6	G	T	13: 23,880,307 (GRCm39)	K153N	possibly damaging	Het
Iigp1	G	A	18: 60,523,523 (GRCm39)	V214M	probably damaging	Het
Luzp2	A	G	7: 54,485,710 (GRCm39)	K2E	probably damaging	Het
Mcc	A	G	18: 44,601,574 (GRCm39)	L410P	probably damaging	Het
Mfn2	A	G	4: 147,967,712 (GRCm39)	F452S	probably damaging	Het
Mib2	C	T	4: 155,743,917 (GRCm39)	G42S	probably damaging	Het
Micu2	A	G	14: 58,156,831 (GRCm39)	F335L	possibly damaging	Het
Mpp3	T	G	11: 101,896,173 (GRCm39)	K450T	possibly damaging	Het
Mtmr4	T	A	11: 87,489,714 (GRCm39)	V79E	probably damaging	Het
Nlrp4b	A	G	7: 10,448,585 (GRCm39)	I263V	probably benign	Het
Or52p2	T	C	7: 102,237,738 (GRCm39)	I71V	probably benign	Het
Or6c76	T	G	10: 129,612,005 (GRCm39)	V74G	probably damaging	Het
Pdk1	G	A	2: 71,710,383 (GRCm39)	W113*	probably null	Het
Phaf1	T	A	8: 105,966,603 (GRCm39)		probably benign	Het
Rad51ap2	T	A	12: 11,507,897 (GRCm39)	H606Q	probably benign	Het
Ralgapa1	A	T	12: 55,829,670 (GRCm39)	I187K	possibly damaging	Het
Rps27	A	G	3: 90,120,230 (GRCm39)		probably benign	Het
Sema3e	T	A	5: 14,286,099 (GRCm39)		probably null	Het
Sh2d3c	G	A	2: 32,643,064 (GRCm39)	C749Y	probably damaging	Het
Siah2	T	C	3: 58,583,656 (GRCm39)	D210G	probably benign	Het
Smap2	G	A	4: 120,834,174 (GRCm39)	P155S	probably benign	Het
Snrk	C	T	9: 121,995,610 (GRCm39)	T463M	possibly damaging	Het
Tm9sf3	A	G	19: 41,233,964 (GRCm39)		probably benign	Het
Tmem132d	C	T	5: 127,861,842 (GRCm39)	E760K	probably damaging	Het
Tmem184c	A	T	8: 78,332,789 (GRCm39)		probably null	Het
Tmem235	A	T	11: 117,751,674 (GRCm39)	I33F	possibly damaging	Het
Tmem267	A	T	13: 119,629,175 (GRCm39)		probably null	Het
Top1	G	A	2: 160,556,185 (GRCm39)	R548Q	probably damaging	Het
Trio	T	C	15: 27,805,908 (GRCm39)	N527D	probably damaging	Het
Upf3a	A	G	8: 13,845,656 (GRCm39)	K252E	probably benign	Het

Other mutations in Phxr4

Allele	Source	Chr	Coord	Type	Predicted Effect
R0103:Phxr4	UTSW	9	13,343,087 (GRCm39)	intron	probably benign
R0103:Phxr4	UTSW	9	13,343,087 (GRCm39)	intron	probably benign
R4825:Phxr4	UTSW	9	13,342,882 (GRCm39)	intron	probably benign

Predicted Primers

PCR Primer
(F):5'- GTCTGACTGTCTATGTGCCAGTGTG -3'
(R):5'- CGATGCCAGAAATGCCCTGCTAA -3'

Sequencing Primer
(F):5'- tccactgtctcctctgcc -3'
(R):5'- TGCTAAATGCACCGGGG -3'

Posted On

2013-06-11