Incidental Mutation 'R5921:Vmp1'
ID461593
Institutional Source Beutler Lab
Gene Symbol Vmp1
Ensembl Gene ENSMUSG00000018171
Gene Namevacuole membrane protein 1
Synonyms3110098I04Rik, Tmem49, Tango5, 4930579A11Rik
MMRRC Submission 044118-MU
Accession Numbers
Is this an essential gene? Probably essential (E-score: 0.964) question?
Stock #R5921 (G1)
Quality Score166
Status Validated
Chromosome11
Chromosomal Location86583865-86683836 bp(-) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) C to T at 86586510 bp
ZygosityHeterozygous
Amino Acid Change Alanine to Threonine at position 355 (A355T)
Ref Sequence ENSEMBL: ENSMUSP00000018315 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000018315]
Predicted Effect probably benign
Transcript: ENSMUST00000018315
AA Change: A355T

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000018315
Gene: ENSMUSG00000018171
AA Change: A355T

DomainStartEndE-ValueType
transmembrane domain 78 95 N/A INTRINSIC
transmembrane domain 115 137 N/A INTRINSIC
Pfam:SNARE_assoc 190 303 1.5e-10 PFAM
transmembrane domain 306 328 N/A INTRINSIC
transmembrane domain 371 388 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000083521
Predicted Effect noncoding transcript
Transcript: ENSMUST00000123590
Predicted Effect noncoding transcript
Transcript: ENSMUST00000145846
Predicted Effect noncoding transcript
Transcript: ENSMUST00000150176
Predicted Effect noncoding transcript
Transcript: ENSMUST00000153971
Meta Mutation Damage Score 0.056 question?
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 98.1%
  • 20x: 94.7%
Validation Efficiency 95% (70/74)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a transmembrane protein that plays a key regulatory role in the process of autophagy. The ectopic overexpression of the encoded protein in cultured cells triggers autophagy even under nutrient-rich conditions. This gene is overexpressed in pancreatitis affected acinar cells where the encoded protein mediates sequestration and degradation of potentially deleterious activated zymogen granules in a process termed, zymophagy. [provided by RefSeq, Jul 2016]
Allele List at MGI
Other mutations in this stock
Total: 63 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4932443I19Rik G T 8: 13,734,840 A34S probably damaging Het
Ablim2 G A 5: 35,812,211 V223M probably damaging Het
Adamts7 T C 9: 90,188,694 S623P probably benign Het
Aqp7 G T 4: 41,036,093 N48K probably benign Het
Asic4 A G 1: 75,451,373 N181S probably benign Het
Blvra A T 2: 127,087,363 probably benign Het
Bmf C A 2: 118,532,553 probably benign Het
Bnc2 A T 4: 84,293,055 I454N possibly damaging Het
Catsperg1 A T 7: 29,190,523 L700H possibly damaging Het
Ccdc14 T C 16: 34,706,391 V222A probably damaging Het
Clstn3 A T 6: 124,431,580 probably benign Het
Col15a1 A T 4: 47,300,602 I1066F probably damaging Het
Dcdc2c T C 12: 28,524,775 E116G possibly damaging Het
Dopey1 G A 9: 86,501,922 S310N probably damaging Het
Dync1h1 T A 12: 110,618,368 V735E probably damaging Het
Eva1a T C 6: 82,092,159 Y156H probably damaging Het
Fbxw26 A G 9: 109,746,018 I13T probably damaging Het
Fermt2 A T 14: 45,464,746 L527Q probably damaging Het
Fxyd4 G A 6: 117,936,138 probably benign Het
Gal A G 19: 3,410,100 S124P probably damaging Het
Glmp T C 3: 88,325,976 S56P probably benign Het
Gm5600 T C 7: 113,708,176 noncoding transcript Het
Golga2 A G 2: 32,297,755 N194S probably benign Het
Gon4l T C 3: 88,909,947 probably benign Het
Gtf2ird2 T A 5: 134,217,584 Y895N probably damaging Het
Hsd3b1 C A 3: 98,857,899 M22I probably benign Het
Ipo13 A C 4: 117,912,089 L169V probably benign Het
Kif13a G T 13: 46,825,300 T208K probably damaging Het
Klhl5 G T 5: 65,162,956 A618S probably damaging Het
Lrig2 A T 3: 104,462,754 L496* probably null Het
Macf1 A G 4: 123,526,711 I250T probably benign Het
Man1a A G 10: 53,907,510 I632T probably damaging Het
Nav2 A G 7: 49,304,576 probably benign Het
Nek8 A G 11: 78,173,059 M40T probably damaging Het
Oas3 T C 5: 120,769,981 D298G probably damaging Het
Ociad1 A G 5: 73,310,382 D167G probably benign Het
Olfr115 A T 17: 37,610,219 C177* probably null Het
Olfr12 T A 1: 92,620,622 S239T probably benign Het
Olfr284 T C 15: 98,340,429 T187A probably benign Het
Pafah2 G T 4: 134,418,069 V255L probably benign Het
Pde10a A G 17: 8,930,537 Y407C probably damaging Het
Pirb A C 7: 3,716,694 Y484* probably null Het
Prl8a6 A G 13: 27,437,188 S20P probably damaging Het
R3hdm4 A T 10: 79,913,619 V52E probably damaging Het
Rab3ip A G 10: 116,939,247 Y69H probably damaging Het
Rxrg T C 1: 167,639,239 M330T possibly damaging Het
Sema4g G T 19: 44,998,704 G460V probably benign Het
Sidt1 T C 16: 44,273,735 probably benign Het
Slc12a2 T A 18: 57,932,523 D943E probably benign Het
Slc12a4 T C 8: 105,945,244 probably null Het
Slc4a3 T G 1: 75,557,444 probably null Het
Slc4a8 C T 15: 100,814,447 probably benign Het
Srcap T A 7: 127,558,833 probably benign Het
Stk39 A G 2: 68,366,105 S327P probably damaging Het
Tbc1d5 G A 17: 50,963,693 T170M probably damaging Het
Trim13 T A 14: 61,605,089 F185Y probably benign Het
Ttc17 A G 2: 94,378,848 V87A probably damaging Het
Ttn A T 2: 76,720,863 M31395K possibly damaging Het
Usp34 T A 11: 23,464,686 D2876E probably damaging Het
Uvssa T C 5: 33,389,752 S221P probably benign Het
Vmn2r93 T A 17: 18,325,768 L634Q probably damaging Het
Xpo5 A T 17: 46,221,421 M461L probably benign Het
Zfp759 T A 13: 67,140,494 F703Y probably damaging Het
Other mutations in Vmp1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02207:Vmp1 APN 11 86607193 missense possibly damaging 0.47
R1179:Vmp1 UTSW 11 86607229 missense probably damaging 1.00
R1500:Vmp1 UTSW 11 86661200 missense possibly damaging 0.78
R1847:Vmp1 UTSW 11 86643587 nonsense probably null
R4094:Vmp1 UTSW 11 86643580 missense probably benign 0.03
R4256:Vmp1 UTSW 11 86661188 missense probably benign 0.02
R4817:Vmp1 UTSW 11 86602053 missense probably benign 0.01
R5267:Vmp1 UTSW 11 86663551 missense probably benign 0.00
R5618:Vmp1 UTSW 11 86663562 missense probably benign 0.00
R6800:Vmp1 UTSW 11 86666087 intron probably null
R7150:Vmp1 UTSW 11 86586576 missense probably benign 0.08
R7216:Vmp1 UTSW 11 86602033 missense probably damaging 0.98
Predicted Primers PCR Primer
(F):5'- ACTGCTTGGTGATGGTGCAC -3'
(R):5'- TTTATGAAGTCCTTGCCGCC -3'

Sequencing Primer
(F):5'- GGTGCACGTGTTAACTTTTTAACC -3'
(R):5'- GTCCTTGCCGCCCTTCTTTTC -3'
Posted On2017-02-28