Incidental Mutation 'R0569:Syt11'
ID46291
Institutional Source Beutler Lab
Gene Symbol Syt11
Ensembl Gene ENSMUSG00000068923
Gene Namesynaptotagmin XI
Synonyms6530420C11Rik
MMRRC Submission 038760-MU
Accession Numbers
Is this an essential gene? Possibly non essential (E-score: 0.393) question?
Stock #R0569 (G1)
Quality Score225
Status Validated
Chromosome3
Chromosomal Location88744700-88775164 bp(-) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) A to G at 88747923 bp
ZygosityHeterozygous
Amino Acid Change Valine to Alanine at position 357 (V357A)
Ref Sequence ENSEMBL: ENSMUSP00000103129 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000090945] [ENSMUST00000107503] [ENSMUST00000107505]
Predicted Effect probably benign
Transcript: ENSMUST00000090945
AA Change: V357A

PolyPhen 2 Score 0.021 (Sensitivity: 0.95; Specificity: 0.80)
SMART Domains Protein: ENSMUSP00000088464
Gene: ENSMUSG00000068923
AA Change: V357A

DomainStartEndE-ValueType
transmembrane domain 15 37 N/A INTRINSIC
low complexity region 72 83 N/A INTRINSIC
C2 172 276 2.36e-17 SMART
C2 306 422 1.37e-22 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000107503
AA Change: V51A

PolyPhen 2 Score 0.012 (Sensitivity: 0.96; Specificity: 0.78)
SMART Domains Protein: ENSMUSP00000103127
Gene: ENSMUSG00000068923
AA Change: V51A

DomainStartEndE-ValueType
C2 1 116 1.06e-19 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000107505
AA Change: V357A

PolyPhen 2 Score 0.021 (Sensitivity: 0.95; Specificity: 0.80)
SMART Domains Protein: ENSMUSP00000103129
Gene: ENSMUSG00000068923
AA Change: V357A

DomainStartEndE-ValueType
transmembrane domain 15 37 N/A INTRINSIC
low complexity region 72 83 N/A INTRINSIC
C2 172 276 2.36e-17 SMART
C2 306 422 1.37e-22 SMART
Predicted Effect unknown
Transcript: ENSMUST00000183267
AA Change: V289A
Meta Mutation Damage Score 0.1004 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 96.7%
  • 20x: 93.8%
Validation Efficiency 97% (56/58)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the synaptotagmin gene family and encodes a protein similar to other family members that are known calcium sensors and mediate calcium-dependent regulation of membrane trafficking in synaptic transmission. The encoded protein is also a substrate for ubiquitin-E3-ligase parkin. The gene has previously been referred to as synaptotagmin XII but has been renamed synaptotagmin XI to be consistent with mouse and rat official nomenclature. [provided by RefSeq, Apr 2010]
PHENOTYPE: Homozygous mutation of this gene results in no obvious abnormal phenotype. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 59 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4833420G17Rik A G 13: 119,484,480 I572M possibly damaging Het
4930447A16Rik T C 15: 37,425,619 M1T probably null Het
4930590J08Rik C A 6: 91,942,578 C739* probably null Het
Adcy1 T A 11: 7,146,514 V634E probably benign Het
Ankfy1 T A 11: 72,753,608 H710Q possibly damaging Het
Ankrd60 C T 2: 173,571,066 V90M probably damaging Het
Asgr2 A T 11: 70,097,877 Q132L probably benign Het
Cchcr1 T A 17: 35,528,968 probably null Het
Ces1h T C 8: 93,352,146 K523E unknown Het
Clec3a G T 8: 114,425,736 G161C probably damaging Het
Cracr2b G A 7: 141,464,935 probably benign Het
Cyp2b10 A T 7: 25,897,735 L17F probably damaging Het
Dhx29 T A 13: 112,948,214 N655K probably benign Het
Dst C A 1: 34,293,427 L4748I probably damaging Het
Eif2b5 G C 16: 20,502,553 L285F probably benign Het
Enox1 T A 14: 77,637,677 D441E probably damaging Het
Fam110a T C 2: 151,970,484 E122G probably damaging Het
Fam161b T A 12: 84,348,639 E510V probably damaging Het
Gabrd T C 4: 155,385,423 Y443C probably damaging Het
Gcn1l1 T G 5: 115,595,059 S1052A probably benign Het
Gnptab A G 10: 88,428,557 E279G possibly damaging Het
Hoxa6 T A 6: 52,208,183 probably null Het
Ibtk T A 9: 85,708,181 probably benign Het
Il6ra A T 3: 89,877,842 probably null Het
Iqgap3 C T 3: 88,090,725 probably benign Het
Kcnk2 A C 1: 189,339,801 L110R probably damaging Het
Knl1 T A 2: 119,097,435 V1919D possibly damaging Het
Lrp1b A T 2: 40,889,239 L2597Q probably benign Het
Magi3 A G 3: 104,016,042 S1120P probably benign Het
Map3k8 T C 18: 4,349,162 D52G probably benign Het
Mcat C T 15: 83,549,248 R198H probably benign Het
Mnd1 A G 3: 84,104,979 V141A probably benign Het
Morc1 T C 16: 48,587,122 L667P probably benign Het
Mrps6 A G 16: 92,111,920 K125E possibly damaging Het
Mst1 T C 9: 108,082,301 F262S probably damaging Het
Olfr1052 T G 2: 86,298,597 I260M probably damaging Het
Olfr18 T A 9: 20,314,579 I114F probably damaging Het
Pbsn C G X: 77,853,440 G15A possibly damaging Het
Pcnx T C 12: 81,992,030 I2023T probably benign Het
Pds5a T G 5: 65,656,401 N247T probably damaging Het
Peak1 T C 9: 56,260,089 Y185C probably damaging Het
Phkb T A 8: 86,017,402 I560N probably damaging Het
Plekhn1 T C 4: 156,225,201 I160V probably damaging Het
Rabgap1 T G 2: 37,489,717 probably benign Het
Rdh10 T G 1: 16,129,293 V241G probably damaging Het
Selenow A T 7: 15,920,117 C37S probably benign Het
Sema6a A T 18: 47,270,805 probably null Het
Slc12a3 T C 8: 94,330,525 probably null Het
Slc22a21 T G 11: 53,951,810 M498L probably benign Het
Spink5 A T 18: 43,989,419 N317I probably damaging Het
Srek1 A G 13: 103,748,862 probably benign Het
Tcof1 T A 18: 60,829,035 K707N possibly damaging Het
Tfip11 C T 5: 112,328,094 R42C probably damaging Het
Trim39 T C 17: 36,263,731 K260E probably benign Het
Ttn T C 2: 76,723,319 T22658A possibly damaging Het
Unc45b C T 11: 82,936,812 probably benign Het
Vmn1r236 A G 17: 21,286,910 I97V probably benign Het
Vps13c T C 9: 67,973,719 V657A probably damaging Het
Zkscan2 A G 7: 123,498,675 V166A probably benign Het
Other mutations in Syt11
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01402:Syt11 APN 3 88762216 missense probably benign 0.01
IGL01404:Syt11 APN 3 88762216 missense probably benign 0.01
IGL03031:Syt11 APN 3 88748841 start codon destroyed probably null 0.06
R0041:Syt11 UTSW 3 88747903 missense probably damaging 1.00
R0326:Syt11 UTSW 3 88762548 missense possibly damaging 0.71
R0613:Syt11 UTSW 3 88762469 missense probably damaging 1.00
R1209:Syt11 UTSW 3 88747840 missense probably damaging 1.00
R1417:Syt11 UTSW 3 88761982 missense probably damaging 1.00
R1530:Syt11 UTSW 3 88762367 missense probably damaging 1.00
R1544:Syt11 UTSW 3 88748803 missense probably benign 0.00
R1727:Syt11 UTSW 3 88761952 missense possibly damaging 0.92
R4952:Syt11 UTSW 3 88762283 missense possibly damaging 0.85
R5097:Syt11 UTSW 3 88747924 missense probably benign 0.01
R5162:Syt11 UTSW 3 88747842 missense probably damaging 1.00
R6024:Syt11 UTSW 3 88762109 missense probably benign
R6875:Syt11 UTSW 3 88762155 missense possibly damaging 0.84
R7013:Syt11 UTSW 3 88747989 missense possibly damaging 0.82
Predicted Primers PCR Primer
(F):5'- AGGGGATCAGCAAATACAATTCGGC -3'
(R):5'- ACACAGCAGAGGACCGTGTCATAG -3'

Sequencing Primer
(F):5'- CAAAAGATCGTCTAGTGCCTTGC -3'
(R):5'- GGCCTGTCTCTCTTCTTCTTC -3'
Posted On2013-06-11