Incidental Mutation 'R0440:Armc9'
ID 46668
Institutional Source Beutler Lab
Gene Symbol Armc9
Ensembl Gene ENSMUSG00000062590
Gene Name armadillo repeat containing 9
Synonyms 4831423D23Rik, 4930438O05Rik, 5730415N24Rik, 3830422A13Rik
MMRRC Submission 038641-MU
Accession Numbers
Essential gene? Possibly essential (E-score: 0.660) question?
Stock # R0440 (G1)
Quality Score 158
Status Validated (trace)
Chromosome 1
Chromosomal Location 86082502-86206006 bp(+) (GRCm39)
Type of Mutation splice site
DNA Base Change (assembly) G to A at 86121984 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000116908 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000027434] [ENSMUST00000027434] [ENSMUST00000113309] [ENSMUST00000131412] [ENSMUST00000131412] [ENSMUST00000150059]
AlphaFold Q9D2I5
Predicted Effect probably null
Transcript: ENSMUST00000027434
SMART Domains Protein: ENSMUSP00000027434
Gene: ENSMUSG00000062590

DomainStartEndE-ValueType
LisH 7 39 1.8e-4 SMART
low complexity region 175 190 N/A INTRINSIC
coiled coil region 206 242 N/A INTRINSIC
SCOP:d1jdha_ 377 575 8e-14 SMART
low complexity region 793 807 N/A INTRINSIC
Predicted Effect probably null
Transcript: ENSMUST00000027434
SMART Domains Protein: ENSMUSP00000027434
Gene: ENSMUSG00000062590

DomainStartEndE-ValueType
LisH 7 39 1.8e-4 SMART
low complexity region 175 190 N/A INTRINSIC
coiled coil region 206 242 N/A INTRINSIC
SCOP:d1jdha_ 377 575 8e-14 SMART
low complexity region 793 807 N/A INTRINSIC
Predicted Effect probably null
Transcript: ENSMUST00000113309
SMART Domains Protein: ENSMUSP00000108934
Gene: ENSMUSG00000062590

DomainStartEndE-ValueType
LisH 7 39 1.8e-4 SMART
low complexity region 175 190 N/A INTRINSIC
coiled coil region 206 242 N/A INTRINSIC
SCOP:d1jdha_ 377 575 8e-14 SMART
low complexity region 794 808 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000123618
Predicted Effect probably null
Transcript: ENSMUST00000131412
SMART Domains Protein: ENSMUSP00000117267
Gene: ENSMUSG00000062590

DomainStartEndE-ValueType
LisH 7 39 1.8e-4 SMART
low complexity region 175 190 N/A INTRINSIC
coiled coil region 206 242 N/A INTRINSIC
SCOP:d1jdha_ 377 575 4e-13 SMART
Predicted Effect probably null
Transcript: ENSMUST00000131412
SMART Domains Protein: ENSMUSP00000117267
Gene: ENSMUSG00000062590

DomainStartEndE-ValueType
LisH 7 39 1.8e-4 SMART
low complexity region 175 190 N/A INTRINSIC
coiled coil region 206 242 N/A INTRINSIC
SCOP:d1jdha_ 377 575 4e-13 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000135973
Predicted Effect probably null
Transcript: ENSMUST00000150059
SMART Domains Protein: ENSMUSP00000116908
Gene: ENSMUSG00000062590

DomainStartEndE-ValueType
SCOP:d1qbkb_ 1 168 4e-9 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000155168
Meta Mutation Damage Score 0.9755 question?
Coding Region Coverage
  • 1x: 99.6%
  • 3x: 98.8%
  • 10x: 97.0%
  • 20x: 94.1%
Validation Efficiency 99% (68/69)
Allele List at MGI
Other mutations in this stock
Total: 67 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
A4galt G A 15: 83,112,694 (GRCm39) R30W probably damaging Het
Adam7 T C 14: 68,748,305 (GRCm39) probably null Het
Agl A T 3: 116,552,455 (GRCm39) L1158Q probably damaging Het
Akap9 T C 5: 4,114,569 (GRCm39) S66P probably damaging Het
Akr1c20 T A 13: 4,537,207 (GRCm39) D316V probably benign Het
App C A 16: 84,853,302 (GRCm39) E259* probably null Het
Arhgef4 A G 1: 34,784,529 (GRCm39) probably null Het
Ass1 A T 2: 31,404,831 (GRCm39) N371Y probably damaging Het
Btaf1 C T 19: 36,964,053 (GRCm39) P875S probably damaging Het
Cc2d1b T A 4: 108,483,013 (GRCm39) probably null Het
Ccar1 C T 10: 62,616,236 (GRCm39) V165I possibly damaging Het
Ccdc106 A T 7: 5,063,244 (GRCm39) I250F probably damaging Het
Ccny T C 18: 9,332,917 (GRCm39) I205V probably benign Het
Cfap52 T A 11: 67,844,914 (GRCm39) I52L probably benign Het
Chd8 T A 14: 52,442,283 (GRCm39) T2096S possibly damaging Het
Clstn3 G A 6: 124,428,372 (GRCm39) T423I probably damaging Het
Col13a1 T C 10: 61,703,262 (GRCm39) D440G possibly damaging Het
Dclk3 G A 9: 111,298,231 (GRCm39) V592M probably damaging Het
Ddx31 A T 2: 28,747,144 (GRCm39) I208F probably damaging Het
Dlat A T 9: 50,556,419 (GRCm39) probably null Het
Eml4 T C 17: 83,753,487 (GRCm39) probably null Het
Enpp2 T A 15: 54,710,633 (GRCm39) probably benign Het
Fryl T C 5: 73,244,315 (GRCm39) S38G possibly damaging Het
Gcnt1 G A 19: 17,307,680 (GRCm39) T15I probably benign Het
Gm21834 T C 17: 58,049,121 (GRCm39) T32A possibly damaging Het
Golga2 A G 2: 32,192,945 (GRCm39) D394G probably damaging Het
Gtf3c4 G T 2: 28,730,181 (GRCm39) probably null Het
Igkv4-69 A G 6: 69,261,253 (GRCm39) probably benign Het
Inpp5j T C 11: 3,451,150 (GRCm39) R500G possibly damaging Het
Kif5b A T 18: 6,226,980 (GRCm39) probably benign Het
Klhl36 A G 8: 120,603,290 (GRCm39) E515G probably damaging Het
Lifr C T 15: 7,186,672 (GRCm39) R59* probably null Het
Lrif1 A T 3: 106,641,714 (GRCm39) Q10L possibly damaging Het
Lrp8 A G 4: 107,726,295 (GRCm39) E908G probably damaging Het
Lrrc23 A T 6: 124,747,667 (GRCm39) D307E probably benign Het
Mpv17l T C 16: 13,762,583 (GRCm39) F27L probably damaging Het
Mta3 C T 17: 84,074,016 (GRCm39) A76V probably damaging Het
Muc5ac T A 7: 141,345,771 (GRCm39) Y202* probably null Het
Naprt A G 15: 75,762,918 (GRCm39) probably benign Het
Npr2 T A 4: 43,650,315 (GRCm39) V960D probably damaging Het
Oca2 A T 7: 56,073,100 (GRCm39) Y765F probably benign Het
Or2d2 A T 7: 106,727,939 (GRCm39) H220Q probably benign Het
Plxna2 T A 1: 194,326,712 (GRCm39) Y215* probably null Het
Prdm16 G A 4: 154,561,084 (GRCm39) probably benign Het
Ptn A G 6: 36,721,432 (GRCm39) S3P probably benign Het
Pus10 T C 11: 23,623,331 (GRCm39) probably benign Het
Rad21 A T 15: 51,831,754 (GRCm39) D442E probably benign Het
Rmdn2 A G 17: 79,975,384 (GRCm39) H291R probably damaging Het
Rp1 A G 1: 4,415,863 (GRCm39) S1750P probably damaging Het
Samd4b A T 7: 28,107,585 (GRCm39) I228N probably benign Het
Sdr9c7 G T 10: 127,734,822 (GRCm39) probably benign Het
Slc13a2 T C 11: 78,294,001 (GRCm39) N254D probably benign Het
Slc16a8 T A 15: 79,136,807 (GRCm39) I132F probably damaging Het
Slc18b1 T A 10: 23,694,976 (GRCm39) Y274N probably benign Het
Slc45a2 A T 15: 11,000,903 (GRCm39) M1L probably benign Het
Smc1b A G 15: 84,996,874 (GRCm39) probably benign Het
Stab2 T C 10: 86,785,792 (GRCm39) S617G probably benign Het
Stk10 A G 11: 32,554,190 (GRCm39) M626V probably damaging Het
Synpo2l T G 14: 20,711,466 (GRCm39) I385L possibly damaging Het
Tmprss11d T C 5: 86,486,671 (GRCm39) Y73C probably damaging Het
Ttc21b A G 2: 66,066,726 (GRCm39) V309A probably benign Het
Tubgcp6 A G 15: 88,987,268 (GRCm39) I1235T probably benign Het
Usp8 A G 2: 126,567,310 (GRCm39) I110V probably benign Het
Vps13c G A 9: 67,880,143 (GRCm39) G3442S probably damaging Het
Wdr59 GGGTGGTG GGGTG 8: 112,207,172 (GRCm39) probably benign Het
Zfp207 T A 11: 80,286,333 (GRCm39) probably benign Het
Zfp748 A C 13: 67,701,144 (GRCm39) probably null Het
Other mutations in Armc9
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00468:Armc9 APN 1 86,126,061 (GRCm39) missense probably damaging 1.00
IGL00771:Armc9 APN 1 86,127,557 (GRCm39) splice site probably null
IGL01689:Armc9 APN 1 86,202,140 (GRCm39) missense probably benign
IGL02143:Armc9 APN 1 86,104,587 (GRCm39) missense possibly damaging 0.58
IGL02680:Armc9 APN 1 86,180,000 (GRCm39) missense probably damaging 1.00
IGL02812:Armc9 APN 1 86,172,293 (GRCm39) missense probably damaging 0.99
IGL02887:Armc9 APN 1 86,092,557 (GRCm39) missense probably damaging 1.00
IGL03011:Armc9 APN 1 86,127,638 (GRCm39) critical splice donor site probably null
IGL03309:Armc9 APN 1 86,202,155 (GRCm39) missense possibly damaging 0.54
R0184:Armc9 UTSW 1 86,126,092 (GRCm39) missense probably damaging 1.00
R0787:Armc9 UTSW 1 86,130,227 (GRCm39) missense probably damaging 0.99
R0849:Armc9 UTSW 1 86,184,992 (GRCm39) missense probably benign 0.00
R1687:Armc9 UTSW 1 86,084,677 (GRCm39) start codon destroyed probably null 1.00
R1962:Armc9 UTSW 1 86,135,696 (GRCm39) missense probably damaging 1.00
R2176:Armc9 UTSW 1 86,127,614 (GRCm39) missense probably damaging 1.00
R3418:Armc9 UTSW 1 86,122,060 (GRCm39) missense probably damaging 1.00
R3419:Armc9 UTSW 1 86,122,060 (GRCm39) missense probably damaging 1.00
R4079:Armc9 UTSW 1 86,140,851 (GRCm39) intron probably benign
R4112:Armc9 UTSW 1 86,116,661 (GRCm39) missense possibly damaging 0.80
R4151:Armc9 UTSW 1 86,092,497 (GRCm39) missense probably damaging 1.00
R4675:Armc9 UTSW 1 86,130,240 (GRCm39) missense probably damaging 1.00
R4934:Armc9 UTSW 1 86,140,801 (GRCm39) missense probably damaging 1.00
R4944:Armc9 UTSW 1 86,202,256 (GRCm39) missense probably damaging 0.98
R5069:Armc9 UTSW 1 86,184,959 (GRCm39) missense probably benign 0.03
R5070:Armc9 UTSW 1 86,184,959 (GRCm39) missense probably benign 0.03
R5071:Armc9 UTSW 1 86,113,838 (GRCm39) missense probably benign 0.01
R5238:Armc9 UTSW 1 86,127,569 (GRCm39) missense probably benign 0.01
R5386:Armc9 UTSW 1 86,126,011 (GRCm39) missense probably null 1.00
R5459:Armc9 UTSW 1 86,135,694 (GRCm39) missense probably damaging 0.97
R6027:Armc9 UTSW 1 86,172,389 (GRCm39) missense probably damaging 1.00
R6144:Armc9 UTSW 1 86,172,301 (GRCm39) missense probably benign 0.06
R7111:Armc9 UTSW 1 86,087,717 (GRCm39) missense probably damaging 1.00
R7237:Armc9 UTSW 1 86,092,571 (GRCm39) missense possibly damaging 0.82
R7304:Armc9 UTSW 1 86,090,437 (GRCm39) missense probably benign
R7452:Armc9 UTSW 1 86,140,814 (GRCm39) missense possibly damaging 0.87
R7555:Armc9 UTSW 1 86,203,400 (GRCm39) missense probably damaging 1.00
R7805:Armc9 UTSW 1 86,124,041 (GRCm39) missense probably damaging 1.00
R8490:Armc9 UTSW 1 86,202,125 (GRCm39) missense probably benign 0.00
R8513:Armc9 UTSW 1 86,090,405 (GRCm39) missense probably damaging 1.00
R9378:Armc9 UTSW 1 86,189,766 (GRCm39) missense probably benign
R9439:Armc9 UTSW 1 86,084,687 (GRCm39) missense possibly damaging 0.46
Z1177:Armc9 UTSW 1 86,124,077 (GRCm39) missense probably benign 0.00
Z1177:Armc9 UTSW 1 86,104,547 (GRCm39) missense probably damaging 0.97
Predicted Primers PCR Primer
(F):5'- CAGAACTCAGGGGATTTGTCCTTGC -3'
(R):5'- TTTGCCAGGACTGCTCTGCTTAG -3'

Sequencing Primer
(F):5'- CTGTGATTTATCTCAGGGTCTAGAAC -3'
(R):5'- CTGCTCTGCTTAGAGGAAAACATC -3'
Posted On 2013-06-11