Incidental Mutation 'R5953:Clec4a3'
ID 471001
Institutional Source Beutler Lab
Gene Symbol Clec4a3
Ensembl Gene ENSMUSG00000043832
Gene Name C-type lectin domain family 4, member a3
Synonyms mDcir3, 3110037K17Rik
MMRRC Submission 043245-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R5953 (G1)
Quality Score 225
Status Not validated
Chromosome 6
Chromosomal Location 122929474-122946834 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to T at 122946451 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Valine to Leucine at position 232 (V232L)
Ref Sequence ENSEMBL: ENSMUSP00000112716 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000088468] [ENSMUST00000117173] [ENSMUST00000204427]
AlphaFold Q8JZX6
Predicted Effect probably benign
Transcript: ENSMUST00000088468
AA Change: V232L

PolyPhen 2 Score 0.121 (Sensitivity: 0.93; Specificity: 0.86)
SMART Domains Protein: ENSMUSP00000085816
Gene: ENSMUSG00000043832
AA Change: V232L

DomainStartEndE-ValueType
transmembrane domain 45 67 N/A INTRINSIC
CLECT 107 231 1.97e-32 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000117173
AA Change: V232L

PolyPhen 2 Score 0.121 (Sensitivity: 0.93; Specificity: 0.86)
SMART Domains Protein: ENSMUSP00000112716
Gene: ENSMUSG00000043832
AA Change: V232L

DomainStartEndE-ValueType
transmembrane domain 45 67 N/A INTRINSIC
CLECT 107 231 1.97e-32 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000204427
SMART Domains Protein: ENSMUSP00000144856
Gene: ENSMUSG00000043832

DomainStartEndE-ValueType
transmembrane domain 45 67 N/A INTRINSIC
SCOP:d1e87a_ 71 109 1e-8 SMART
Blast:CLECT 73 109 2e-20 BLAST
PDB:3VYK|A 73 109 7e-13 PDB
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 97.9%
  • 20x: 93.5%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 40 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca15 T A 7: 119,960,241 (GRCm39) S675T probably damaging Het
Acvr2a T C 2: 48,780,416 (GRCm39) L212P probably damaging Het
Adamts14 T C 10: 61,043,225 (GRCm39) T751A probably damaging Het
Adgrf2 T C 17: 43,021,229 (GRCm39) N532D probably damaging Het
Asns T C 6: 7,682,285 (GRCm39) E220G probably benign Het
Cd209d A T 8: 3,927,979 (GRCm39) probably null Het
Cenpp T C 13: 49,806,161 (GRCm39) D2G probably damaging Het
Cenps C A 4: 149,214,658 (GRCm39) probably benign Het
Cntln C T 4: 84,968,156 (GRCm39) H792Y possibly damaging Het
Cobl T A 11: 12,206,220 (GRCm39) T470S probably benign Het
Cym T A 3: 107,120,783 (GRCm39) D274V probably damaging Het
Elac2 G A 11: 64,890,049 (GRCm39) C627Y probably benign Het
Emc7 T A 2: 112,289,903 (GRCm39) I111N probably damaging Het
Eya4 T A 10: 23,027,871 (GRCm39) Y310F probably damaging Het
Fam217b C T 2: 178,062,153 (GRCm39) S39F probably damaging Het
Fam234b G T 6: 135,202,705 (GRCm39) R353L possibly damaging Het
Focad A G 4: 88,147,572 (GRCm39) I404V probably benign Het
Il1rl1 T A 1: 40,481,833 (GRCm39) D180E probably benign Het
Il2rb A T 15: 78,369,182 (GRCm39) C256* probably null Het
Intu A C 3: 40,633,980 (GRCm39) L404F probably damaging Het
Jmy G A 13: 93,635,624 (GRCm39) T64M possibly damaging Het
Mpl C A 4: 118,311,707 (GRCm39) S302I possibly damaging Het
Mpl T A 4: 118,311,708 (GRCm39) S302C probably damaging Het
Muc2 G T 7: 141,287,951 (GRCm39) D241Y probably damaging Het
Nlrp3 C T 11: 59,437,617 (GRCm39) H99Y probably benign Het
Or5b118 A T 19: 13,448,732 (GRCm39) I133F possibly damaging Het
Or6c216 C G 10: 129,678,483 (GRCm39) V143L probably benign Het
Pglyrp1 A T 7: 18,624,238 (GRCm39) I174F probably damaging Het
Pi4ka A T 16: 17,099,815 (GRCm39) I1936N Het
Plekhm3 C T 1: 64,977,054 (GRCm39) E139K probably damaging Het
Pomk C A 8: 26,473,076 (GRCm39) L292F probably damaging Het
Ptpru A G 4: 131,504,148 (GRCm39) I1103T probably damaging Het
Pygl T C 12: 70,266,401 (GRCm39) D38G probably damaging Het
Rapsn T C 2: 90,872,308 (GRCm39) V214A probably benign Het
S100a9 T A 3: 90,600,234 (GRCm39) K54M probably damaging Het
Sdk2 A G 11: 113,684,570 (GRCm39) Y1964H probably damaging Het
Slc17a5 T C 9: 78,464,780 (GRCm39) N331S probably damaging Het
Snx9 T A 17: 5,958,677 (GRCm39) C252S probably damaging Het
Snx9 G T 17: 5,958,678 (GRCm39) C252F probably damaging Het
Trem1 A T 17: 48,544,220 (GRCm39) M82L probably benign Het
Other mutations in Clec4a3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01667:Clec4a3 APN 6 122,929,819 (GRCm39) utr 5 prime probably benign
IGL02210:Clec4a3 APN 6 122,931,067 (GRCm39) missense probably damaging 0.98
IGL02874:Clec4a3 APN 6 122,944,519 (GRCm39) missense probably benign 0.16
IGL02983:Clec4a3 APN 6 122,944,526 (GRCm39) critical splice donor site probably null
R0035:Clec4a3 UTSW 6 122,944,508 (GRCm39) missense probably damaging 1.00
R0035:Clec4a3 UTSW 6 122,944,508 (GRCm39) missense probably damaging 1.00
R0334:Clec4a3 UTSW 6 122,946,329 (GRCm39) missense possibly damaging 0.81
R0671:Clec4a3 UTSW 6 122,930,993 (GRCm39) critical splice acceptor site probably null
R1508:Clec4a3 UTSW 6 122,944,467 (GRCm39) missense probably benign 0.05
R1739:Clec4a3 UTSW 6 122,931,000 (GRCm39) nonsense probably null
R3547:Clec4a3 UTSW 6 122,941,239 (GRCm39) missense probably damaging 1.00
R5836:Clec4a3 UTSW 6 122,929,861 (GRCm39) missense possibly damaging 0.66
R7178:Clec4a3 UTSW 6 122,941,251 (GRCm39) missense probably benign 0.02
R7664:Clec4a3 UTSW 6 122,943,381 (GRCm39) missense probably benign 0.03
R7763:Clec4a3 UTSW 6 122,941,299 (GRCm39) missense probably benign 0.01
R8739:Clec4a3 UTSW 6 122,944,508 (GRCm39) missense probably damaging 1.00
R8925:Clec4a3 UTSW 6 122,946,328 (GRCm39) missense probably damaging 1.00
R8927:Clec4a3 UTSW 6 122,946,328 (GRCm39) missense probably damaging 1.00
R8955:Clec4a3 UTSW 6 122,943,479 (GRCm39) missense possibly damaging 0.94
R9457:Clec4a3 UTSW 6 122,931,045 (GRCm39) missense probably benign 0.20
Predicted Primers PCR Primer
(F):5'- ACACTGAGTGCTGTGATCTC -3'
(R):5'- CAAGTAAGTTTACACATGTGCCAG -3'

Sequencing Primer
(F):5'- GAGTGCTGTGATCTCCATAAATTCC -3'
(R):5'- AGTTTACACATGTGCCAGTATTATC -3'
Posted On 2017-03-31