Incidental Mutation 'R5960:Ciz1'
ID 471389
Institutional Source Beutler Lab
Gene Symbol Ciz1
Ensembl Gene ENSMUSG00000039205
Gene Name CDKN1A interacting zinc finger protein 1
Synonyms 0610038H21Rik, 2900056O04Rik
MMRRC Submission 044147-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.128) question?
Stock # R5960 (G1)
Quality Score 225
Status Validated
Chromosome 2
Chromosomal Location 32252724-32268311 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to A at 32261228 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Glutamine to Lysine at position 356 (Q356K)
Ref Sequence ENSEMBL: ENSMUSP00000108957 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000048964] [ENSMUST00000113331] [ENSMUST00000113332] [ENSMUST00000113334] [ENSMUST00000113338] [ENSMUST00000131152] [ENSMUST00000136079] [ENSMUST00000125818] [ENSMUST00000132028]
AlphaFold Q8VEH2
Predicted Effect probably benign
Transcript: ENSMUST00000048964
AA Change: Q380K

PolyPhen 2 Score 0.161 (Sensitivity: 0.92; Specificity: 0.87)
SMART Domains Protein: ENSMUSP00000048428
Gene: ENSMUSG00000039205
AA Change: Q380K

DomainStartEndE-ValueType
coiled coil region 5 45 N/A INTRINSIC
low complexity region 58 80 N/A INTRINSIC
low complexity region 85 99 N/A INTRINSIC
low complexity region 128 140 N/A INTRINSIC
low complexity region 245 256 N/A INTRINSIC
low complexity region 361 390 N/A INTRINSIC
ZnF_U1 534 568 1.23e-1 SMART
ZnF_C2H2 537 561 1.99e0 SMART
ZnF_U1 626 660 2.08e-1 SMART
ZnF_C2H2 629 653 3.02e0 SMART
low complexity region 689 709 N/A INTRINSIC
ZnF_U1 744 779 1.43e-4 SMART
ZnF_C2H2 747 772 9.56e1 SMART
low complexity region 823 845 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000113331
AA Change: Q356K

PolyPhen 2 Score 0.845 (Sensitivity: 0.83; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000108957
Gene: ENSMUSG00000039205
AA Change: Q356K

DomainStartEndE-ValueType
coiled coil region 5 45 N/A INTRINSIC
low complexity region 58 80 N/A INTRINSIC
low complexity region 85 100 N/A INTRINSIC
low complexity region 104 116 N/A INTRINSIC
low complexity region 221 232 N/A INTRINSIC
internal_repeat_2 252 284 9.48e-5 PROSPERO
internal_repeat_2 301 333 9.48e-5 PROSPERO
low complexity region 337 366 N/A INTRINSIC
ZnF_U1 510 544 1.23e-1 SMART
ZnF_C2H2 513 537 1.99e0 SMART
ZnF_U1 602 636 2.08e-1 SMART
ZnF_C2H2 605 629 3.02e0 SMART
low complexity region 665 685 N/A INTRINSIC
ZnF_U1 720 755 1.43e-4 SMART
ZnF_C2H2 723 748 9.56e1 SMART
low complexity region 799 821 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000113332
SMART Domains Protein: ENSMUSP00000108958
Gene: ENSMUSG00000039205

DomainStartEndE-ValueType
coiled coil region 5 45 N/A INTRINSIC
low complexity region 58 80 N/A INTRINSIC
low complexity region 85 99 N/A INTRINSIC
low complexity region 128 140 N/A INTRINSIC
low complexity region 240 251 N/A INTRINSIC
ZnF_U1 480 514 1.23e-1 SMART
ZnF_C2H2 483 507 1.99e0 SMART
Blast:ZnF_U1 543 570 2e-6 BLAST
ZnF_U1 572 606 2.08e-1 SMART
ZnF_C2H2 575 599 3.02e0 SMART
low complexity region 635 655 N/A INTRINSIC
ZnF_U1 690 725 1.43e-4 SMART
ZnF_C2H2 693 718 9.56e1 SMART
low complexity region 769 791 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000113334
AA Change: Q380K

PolyPhen 2 Score 0.161 (Sensitivity: 0.92; Specificity: 0.87)
SMART Domains Protein: ENSMUSP00000108960
Gene: ENSMUSG00000039205
AA Change: Q380K

DomainStartEndE-ValueType
coiled coil region 5 45 N/A INTRINSIC
low complexity region 58 80 N/A INTRINSIC
low complexity region 85 99 N/A INTRINSIC
low complexity region 128 140 N/A INTRINSIC
low complexity region 245 256 N/A INTRINSIC
low complexity region 361 390 N/A INTRINSIC
ZnF_U1 534 568 1.23e-1 SMART
ZnF_C2H2 537 561 1.99e0 SMART
ZnF_U1 626 660 2.08e-1 SMART
ZnF_C2H2 629 653 3.02e0 SMART
low complexity region 689 709 N/A INTRINSIC
ZnF_U1 744 779 1.43e-4 SMART
ZnF_C2H2 747 772 9.56e1 SMART
low complexity region 823 845 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000113338
AA Change: Q380K

PolyPhen 2 Score 0.161 (Sensitivity: 0.92; Specificity: 0.87)
SMART Domains Protein: ENSMUSP00000108964
Gene: ENSMUSG00000039205
AA Change: Q380K

DomainStartEndE-ValueType
coiled coil region 5 45 N/A INTRINSIC
low complexity region 58 80 N/A INTRINSIC
low complexity region 85 99 N/A INTRINSIC
low complexity region 128 140 N/A INTRINSIC
low complexity region 245 256 N/A INTRINSIC
low complexity region 361 390 N/A INTRINSIC
ZnF_U1 534 568 1.23e-1 SMART
ZnF_C2H2 537 561 1.99e0 SMART
ZnF_U1 626 660 2.08e-1 SMART
ZnF_C2H2 629 653 3.02e0 SMART
low complexity region 689 709 N/A INTRINSIC
ZnF_U1 744 779 1.43e-4 SMART
ZnF_C2H2 747 772 9.56e1 SMART
low complexity region 823 845 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000125482
SMART Domains Protein: ENSMUSP00000120019
Gene: ENSMUSG00000039205

DomainStartEndE-ValueType
ZnF_C2H2 216 240 1.99e0 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000125769
Predicted Effect unknown
Transcript: ENSMUST00000139637
AA Change: Q219K
SMART Domains Protein: ENSMUSP00000122469
Gene: ENSMUSG00000039205
AA Change: Q219K

DomainStartEndE-ValueType
low complexity region 85 96 N/A INTRINSIC
low complexity region 201 230 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000149184
Predicted Effect noncoding transcript
Transcript: ENSMUST00000132290
Predicted Effect noncoding transcript
Transcript: ENSMUST00000192758
Predicted Effect noncoding transcript
Transcript: ENSMUST00000134141
Predicted Effect noncoding transcript
Transcript: ENSMUST00000145957
Predicted Effect noncoding transcript
Transcript: ENSMUST00000137220
Predicted Effect noncoding transcript
Transcript: ENSMUST00000192055
Predicted Effect probably benign
Transcript: ENSMUST00000131152
SMART Domains Protein: ENSMUSP00000141211
Gene: ENSMUSG00000039205

DomainStartEndE-ValueType
coiled coil region 5 45 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000136079
SMART Domains Protein: ENSMUSP00000116812
Gene: ENSMUSG00000039205

DomainStartEndE-ValueType
coiled coil region 5 45 N/A INTRINSIC
low complexity region 58 80 N/A INTRINSIC
low complexity region 85 99 N/A INTRINSIC
low complexity region 128 140 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000151806
SMART Domains Protein: ENSMUSP00000119429
Gene: ENSMUSG00000039205

DomainStartEndE-ValueType
low complexity region 70 81 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000125818
SMART Domains Protein: ENSMUSP00000117937
Gene: ENSMUSG00000039205

DomainStartEndE-ValueType
Blast:ZnF_U1 4 31 3e-6 BLAST
ZnF_U1 33 67 2.08e-1 SMART
ZnF_C2H2 36 60 3.02e0 SMART
low complexity region 96 116 N/A INTRINSIC
ZnF_U1 151 186 1.43e-4 SMART
ZnF_C2H2 154 179 9.56e1 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000132028
SMART Domains Protein: ENSMUSP00000120295
Gene: ENSMUSG00000039205

DomainStartEndE-ValueType
coiled coil region 5 45 N/A INTRINSIC
low complexity region 58 80 N/A INTRINSIC
low complexity region 85 99 N/A INTRINSIC
low complexity region 128 140 N/A INTRINSIC
Meta Mutation Damage Score 0.1010 question?
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 97.8%
  • 20x: 92.9%
Validation Efficiency 99% (71/72)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a zinc finger DNA binding protein that interacts with CIP1, part of a complex with cyclin E. The encoded protein may regulate the cellular localization of CIP1. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Apr 2012]
PHENOTYPE: Mice hoomozygous for a knock-out allele exhibit decreased body size and gender specific effects on motor phenotypes. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 62 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930579F01Rik T C 3: 137,889,528 (GRCm39) T30A possibly damaging Het
Adat1 T C 8: 112,709,233 (GRCm39) M197V probably benign Het
Alcam T C 16: 52,115,489 (GRCm39) T210A probably benign Het
Ankfy1 T A 11: 72,648,178 (GRCm39) S886R possibly damaging Het
Aopep G A 13: 63,388,087 (GRCm39) R22Q probably damaging Het
Atg2a T G 19: 6,304,390 (GRCm39) F1136V probably damaging Het
Birc6 A T 17: 74,835,760 (GRCm39) T72S probably damaging Het
Caskin1 A G 17: 24,717,869 (GRCm39) T219A probably benign Het
Catsperg1 A G 7: 28,884,208 (GRCm39) probably benign Het
Cdh12 A G 15: 21,492,562 (GRCm39) probably null Het
Cfap126 A G 1: 170,952,882 (GRCm39) D45G probably damaging Het
Ckmt1 T A 2: 121,194,058 (GRCm39) I407N probably damaging Het
Csmd1 C T 8: 16,121,430 (GRCm39) E1756K possibly damaging Het
Cwf19l2 A G 9: 3,411,404 (GRCm39) K94E probably benign Het
Cyth1 A G 11: 118,023,193 (GRCm39) probably benign Het
Ddx25 A G 9: 35,465,807 (GRCm39) probably null Het
Dnah2 C T 11: 69,349,746 (GRCm39) R2399Q probably benign Het
Dock3 C A 9: 106,788,554 (GRCm39) G138* probably null Het
Fam20a G A 11: 109,566,795 (GRCm39) probably benign Het
Fanci A G 7: 79,093,510 (GRCm39) T1006A probably damaging Het
Fat1 T C 8: 45,486,405 (GRCm39) Y3320H probably damaging Het
Fndc8 A G 11: 82,788,398 (GRCm39) D76G probably benign Het
Gm19965 T C 1: 116,749,201 (GRCm39) I294T possibly damaging Het
Gm9755 T G 8: 67,967,840 (GRCm39) noncoding transcript Het
Iars1 T C 13: 49,878,113 (GRCm39) V879A possibly damaging Het
Ifi209 A T 1: 173,466,382 (GRCm39) probably null Het
Itgb2l T C 16: 96,227,459 (GRCm39) H528R probably benign Het
Marf1 T C 16: 13,970,281 (GRCm39) Q146R probably damaging Het
Megf11 A G 9: 64,567,731 (GRCm39) T407A probably benign Het
Mtg1 T C 7: 139,726,906 (GRCm39) probably benign Het
Nhsl1 T G 10: 18,402,724 (GRCm39) S1317A probably benign Het
Nhsl3 A G 4: 129,115,865 (GRCm39) V933A probably damaging Het
Nudt16 A T 9: 105,008,698 (GRCm39) C63S possibly damaging Het
Nup107 T C 10: 117,625,915 (GRCm39) I49V probably null Het
Or51a24 G T 7: 103,733,560 (GRCm39) N242K probably damaging Het
Or5m13 T A 2: 85,749,069 (GRCm39) S267T probably benign Het
Orc1 T C 4: 108,463,495 (GRCm39) S671P possibly damaging Het
Paox A G 7: 139,712,402 (GRCm39) D211G probably benign Het
Pck2 A G 14: 55,786,004 (GRCm39) T571A possibly damaging Het
Pigg A G 5: 108,484,160 (GRCm39) E469G probably benign Het
Pikfyve C A 1: 65,292,597 (GRCm39) Y1349* probably null Het
Prickle2 A G 6: 92,353,286 (GRCm39) F783L probably benign Het
Prpf40b G T 15: 99,212,785 (GRCm39) R627L probably damaging Het
Rasgrf1 A G 9: 89,903,437 (GRCm39) I1217V possibly damaging Het
Rbm26 A T 14: 105,387,751 (GRCm39) V457D probably damaging Het
Rex1bd C A 8: 70,959,156 (GRCm39) R49L probably null Het
Robo2 A T 16: 73,730,603 (GRCm39) L1003Q probably damaging Het
Sacs A G 14: 61,446,144 (GRCm39) D2730G probably benign Het
Setd6 T A 8: 96,442,827 (GRCm39) L88H probably damaging Het
Smim35 T C 9: 45,154,288 (GRCm39) Y50H probably damaging Het
Sncb A G 13: 54,910,795 (GRCm39) probably benign Het
Spata31e2 T A 1: 26,722,225 (GRCm39) H985L probably benign Het
Spmap2 T G 10: 79,421,765 (GRCm39) K151T possibly damaging Het
Stard9 A G 2: 120,530,442 (GRCm39) E2233G probably benign Het
Susd2 C T 10: 75,475,770 (GRCm39) V410I probably damaging Het
Synm A G 7: 67,385,494 (GRCm39) S281P probably damaging Het
Syvn1 C T 19: 6,100,598 (GRCm39) R330C probably damaging Het
Tiam2 A T 17: 3,488,915 (GRCm39) D741V probably benign Het
Tph1 A G 7: 46,311,429 (GRCm39) probably null Het
Trav7-5 T A 14: 53,768,706 (GRCm39) H91Q probably benign Het
Tymp A T 15: 89,260,778 (GRCm39) probably null Het
Usp45 A C 4: 21,810,797 (GRCm39) D331A probably damaging Het
Other mutations in Ciz1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00418:Ciz1 APN 2 32,262,400 (GRCm39) missense probably damaging 1.00
IGL01872:Ciz1 APN 2 32,268,121 (GRCm39) utr 3 prime probably benign
R0029:Ciz1 UTSW 2 32,261,431 (GRCm39) splice site probably benign
R0122:Ciz1 UTSW 2 32,261,431 (GRCm39) splice site probably benign
R0363:Ciz1 UTSW 2 32,267,375 (GRCm39) critical splice donor site probably null
R0373:Ciz1 UTSW 2 32,257,479 (GRCm39) missense probably damaging 1.00
R0653:Ciz1 UTSW 2 32,262,418 (GRCm39) missense probably damaging 1.00
R0816:Ciz1 UTSW 2 32,266,388 (GRCm39) unclassified probably benign
R1255:Ciz1 UTSW 2 32,255,888 (GRCm39) critical splice donor site probably null
R2116:Ciz1 UTSW 2 32,257,477 (GRCm39) missense probably damaging 0.99
R3161:Ciz1 UTSW 2 32,260,075 (GRCm39) missense probably benign 0.11
R3732:Ciz1 UTSW 2 32,257,495 (GRCm39) missense possibly damaging 0.68
R4014:Ciz1 UTSW 2 32,264,356 (GRCm39) missense probably damaging 0.96
R4386:Ciz1 UTSW 2 32,260,111 (GRCm39) missense possibly damaging 0.92
R4687:Ciz1 UTSW 2 32,257,477 (GRCm39) missense probably damaging 0.99
R4786:Ciz1 UTSW 2 32,267,539 (GRCm39) missense probably damaging 1.00
R4825:Ciz1 UTSW 2 32,261,753 (GRCm39) missense probably damaging 0.99
R4869:Ciz1 UTSW 2 32,254,247 (GRCm39) missense probably damaging 0.99
R4871:Ciz1 UTSW 2 32,262,300 (GRCm39) splice site probably benign
R5270:Ciz1 UTSW 2 32,264,511 (GRCm39) splice site probably null
R5429:Ciz1 UTSW 2 32,266,055 (GRCm39) missense possibly damaging 0.93
R5621:Ciz1 UTSW 2 32,261,753 (GRCm39) missense probably damaging 0.96
R5721:Ciz1 UTSW 2 32,266,052 (GRCm39) missense probably damaging 1.00
R5805:Ciz1 UTSW 2 32,257,408 (GRCm39) missense probably damaging 1.00
R6187:Ciz1 UTSW 2 32,260,063 (GRCm39) missense possibly damaging 0.90
R6612:Ciz1 UTSW 2 32,267,323 (GRCm39) missense possibly damaging 0.93
R7006:Ciz1 UTSW 2 32,261,127 (GRCm39) critical splice donor site probably null
R7200:Ciz1 UTSW 2 32,254,299 (GRCm39) missense probably damaging 1.00
R7498:Ciz1 UTSW 2 32,261,761 (GRCm39) missense probably benign
R7574:Ciz1 UTSW 2 32,257,380 (GRCm39) missense probably benign 0.16
R7910:Ciz1 UTSW 2 32,260,139 (GRCm39) critical splice donor site probably null
R8390:Ciz1 UTSW 2 32,257,335 (GRCm39) missense probably benign 0.00
R8749:Ciz1 UTSW 2 32,255,848 (GRCm39) missense probably benign 0.03
R8765:Ciz1 UTSW 2 32,260,895 (GRCm39) missense probably damaging 0.99
R8784:Ciz1 UTSW 2 32,260,262 (GRCm39) missense probably benign 0.01
R8812:Ciz1 UTSW 2 32,254,286 (GRCm39) missense probably benign 0.00
R8927:Ciz1 UTSW 2 32,257,512 (GRCm39) nonsense probably null
R8928:Ciz1 UTSW 2 32,257,512 (GRCm39) nonsense probably null
R9681:Ciz1 UTSW 2 32,260,974 (GRCm39) missense possibly damaging 0.71
R9744:Ciz1 UTSW 2 32,253,859 (GRCm39) missense unknown
X0018:Ciz1 UTSW 2 32,261,264 (GRCm39) missense probably benign 0.00
Predicted Primers PCR Primer
(F):5'- TCCAAATGCTGCCGCGTATC -3'
(R):5'- AGAGGATAGCTGTGGTTCCG -3'

Sequencing Primer
(F):5'- GGCACTGCAGATCCAGAC -3'
(R):5'- ATAGCTGTGGTTCCGTGGCAC -3'
Posted On 2017-03-31