Mutagenetix > Incidental Mutation

Incidental Mutation 'R5974:Ticam1'

471652

Institutional Source

Beutler Lab

Gene Symbol

Ticam1

Ensembl Gene

ENSMUSG00000047123

Gene Name

TIR domain containing adaptor molecule 1

Synonyms

Trif, TICAM-1

MMRRC Submission

044157-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R5974 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

56576462-56583767 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 56578178 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 306 (T306A)

Ref Sequence

ENSEMBL: ENSMUSP00000055104 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000058136]

AlphaFold

Q80UF7

Predicted Effect

probably benign
Transcript: ENSMUST00000058136
AA Change: T306A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000055104
Gene: ENSMUSG00000047123
AA Change: T306A

Domain	Start	End	E-Value	Type
PDB:4BSX\|D	5	153	3e-52	PDB
low complexity region	345	384	N/A	INTRINSIC
SCOP:d1fyva_	386	491	8e-3	SMART
PDB:2M1X\|A	391	547	1e-74	PDB
Pfam:RHIM	610	698	4.7e-13	PFAM

Coding Region Coverage

1x: 99.9%
3x: 99.5%
10x: 97.6%
20x: 92.6%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes an adaptor protein containing a Toll/interleukin-1 receptor (TIR) homology domain, which is an intracellular signaling domain that mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. This protein is involved in native immunity against invading pathogens. It specifically interacts with toll-like receptor 3, but not with other TLRs, and this association mediates dsRNA induction of interferon-beta through activation of nuclear factor kappa-B, during an antiviral immune response. [provided by RefSeq, Jan 2012]
PHENOTYPE: Homozygous null mice are viable but exhibit abnormalities of the innate immune system. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 68 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Afg3l2	G	T	18: 67,554,329 (GRCm39)	L458M	probably damaging	Het
Anapc4	T	C	5: 53,002,742 (GRCm39)	L261P	probably damaging	Het
Aqp6	A	G	15: 99,499,317 (GRCm39)	Y10C	probably benign	Het
Ccnb1ip1	A	T	14: 51,029,662 (GRCm39)	N133K	probably benign	Het
Clip4	A	T	17: 72,138,242 (GRCm39)	H433L	probably damaging	Het
Cntnap5c	T	A	17: 58,183,480 (GRCm39)	M62K	probably benign	Het
Col12a1	A	G	9: 79,589,409 (GRCm39)	S1049P	probably damaging	Het
Col15a1	C	T	4: 47,258,683 (GRCm39)	T358I	probably benign	Het
Coro7	A	T	16: 4,449,753 (GRCm39)	D645E	possibly damaging	Het
Ctnnal1	C	A	4: 56,817,067 (GRCm39)	W585L	probably damaging	Het
Ctnnd1	C	A	2: 84,451,259 (GRCm39)	E114*	probably null	Het
Daam2	T	A	17: 49,771,501 (GRCm39)	S882C	probably damaging	Het
Des	T	A	1: 75,339,628 (GRCm39)	S329T	probably benign	Het
Dido1	T	C	2: 180,313,290 (GRCm39)	D994G	probably benign	Het
Dock3	A	G	9: 106,871,261 (GRCm39)	V547A	probably damaging	Het
Ebf4	G	A	2: 130,207,484 (GRCm39)	A643T	probably damaging	Het
Ect2	C	A	3: 27,199,112 (GRCm39)	E194*	probably null	Het
Epb41l2	A	G	10: 25,317,713 (GRCm39)	I77V	possibly damaging	Het
Fat3	A	T	9: 15,917,824 (GRCm39)		probably null	Het
Fbn2	T	G	18: 58,181,992 (GRCm39)	D1803A	probably damaging	Het
Fbxo10	T	C	4: 45,040,631 (GRCm39)	E858G	probably benign	Het
Fbxo24	C	T	5: 137,617,912 (GRCm39)	R284Q	probably benign	Het
Fsip2	T	A	2: 82,793,657 (GRCm39)	I425N	possibly damaging	Het
Fut9	A	C	4: 25,620,090 (GRCm39)	Y241*	probably null	Het
Galr2	A	G	11: 116,173,852 (GRCm39)	S161G	possibly damaging	Het
Gcc2	T	A	10: 58,094,065 (GRCm39)	L14I	probably damaging	Het
H2-T15	A	T	17: 36,367,677 (GRCm39)	D220E	probably benign	Het
Hdac11	G	A	6: 91,150,196 (GRCm39)	V332I	probably benign	Het
Hdac7	T	C	15: 97,699,953 (GRCm39)		probably null	Het
Kif16b	C	T	2: 142,699,301 (GRCm39)	G93D	probably damaging	Het
Krtap11-1	C	A	16: 89,367,656 (GRCm39)	C121F	possibly damaging	Het
Lacc1	T	C	14: 77,272,517 (GRCm39)	Q93R	probably damaging	Het
Lama1	T	C	17: 68,080,722 (GRCm39)	F1250S	probably benign	Het
Lmbrd2	A	G	15: 9,172,202 (GRCm39)	E332G	probably benign	Het
Lrp2	C	A	2: 69,289,892 (GRCm39)	C3649F	probably damaging	Het
Map1a	T	C	2: 121,134,857 (GRCm39)	V1653A	probably benign	Het
Mrpl1	T	C	5: 96,379,653 (GRCm39)		probably null	Het
Myo1b	A	G	1: 51,817,532 (GRCm39)	S577P	probably damaging	Het
Nedd4	T	A	9: 72,650,920 (GRCm39)		probably null	Het
Negr1	T	A	3: 156,774,923 (GRCm39)	V213E	probably damaging	Het
Nlk	T	G	11: 78,481,792 (GRCm39)	Q223P	probably benign	Het
Ntn5	A	G	7: 45,340,848 (GRCm39)	H162R	probably damaging	Het
Nup42	T	C	5: 24,372,400 (GRCm39)	S63P	probably damaging	Het
Obscn	C	A	11: 58,967,373 (GRCm39)	D477Y	probably damaging	Het
Or12d12	A	T	17: 37,611,229 (GRCm39)	I28N	possibly damaging	Het
Or5an1	T	C	19: 12,261,200 (GRCm39)	S263P	probably damaging	Het
Or8u10	T	C	2: 85,915,225 (GRCm39)	S299G	probably benign	Het
Pabpn1	A	G	14: 55,134,617 (GRCm39)	T280A	probably damaging	Het
Per3	A	T	4: 151,127,194 (GRCm39)	V109E	possibly damaging	Het
Pira2	A	C	7: 3,844,576 (GRCm39)	V485G	probably benign	Het
Pknox2	A	G	9: 36,847,618 (GRCm39)	L133P	probably damaging	Het
Pros1	A	C	16: 62,721,030 (GRCm39)	N195T	probably damaging	Het
Rffl	T	C	11: 82,696,977 (GRCm39)	K289E	probably damaging	Het
Ripk1	T	A	13: 34,214,084 (GRCm39)	Y475*	probably null	Het
Ryr2	A	G	13: 11,729,397 (GRCm39)		probably null	Het
Sgk1	T	A	10: 21,872,148 (GRCm39)	N241K	probably damaging	Het
Skint1	T	A	4: 111,876,516 (GRCm39)	S146T	probably benign	Het
Sox30	G	T	11: 45,871,900 (GRCm39)	D252Y	probably damaging	Het
Syngap1	A	G	17: 27,182,012 (GRCm39)	Y1002C	probably damaging	Het
Tiam2	A	G	17: 3,465,084 (GRCm39)	D271G	possibly damaging	Het
Tmem252	A	G	19: 24,651,632 (GRCm39)	E67G	probably benign	Het
Tnxb	T	G	17: 34,904,681 (GRCm39)	F1149V	probably damaging	Het
Ubr4	A	G	4: 139,148,389 (GRCm39)		probably null	Het
Unc50	A	G	1: 37,476,290 (GRCm39)	D150G	probably benign	Het
Ywhag	A	C	5: 135,940,483 (GRCm39)	L37R	probably damaging	Het
Zfp296	T	C	7: 19,311,862 (GRCm39)	L123P	probably benign	Het
Zfp418	G	T	7: 7,185,199 (GRCm39)	Q387H	possibly damaging	Het
Zfp882	T	C	8: 72,666,999 (GRCm39)	F53L	probably damaging	Het

Other mutations in Ticam1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02160:Ticam1	APN	17	56,577,560 (GRCm39)	missense	possibly damaging	0.80
IGL02164:Ticam1	APN	17	56,577,019 (GRCm39)	missense	unknown
Lps2	UTSW	17	56,576,969 (GRCm39)	frame shift	probably null
Pangu	UTSW	17	56,276,693 (GRCm38)	critical splice donor site	probably benign
Yue	UTSW	17	56,578,339 (GRCm39)	missense	probably benign	0.06
R0930:Ticam1	UTSW	17	56,578,687 (GRCm39)	missense	probably damaging	1.00
R0930:Ticam1	UTSW	17	56,577,226 (GRCm39)	missense	unknown
R1509:Ticam1	UTSW	17	56,578,113 (GRCm39)	missense	probably benign	0.43
R1837:Ticam1	UTSW	17	56,577,799 (GRCm39)	missense	possibly damaging	0.87
R1863:Ticam1	UTSW	17	56,578,436 (GRCm39)	missense	probably damaging	1.00
R1867:Ticam1	UTSW	17	56,578,718 (GRCm39)	missense	probably benign	0.01
R1872:Ticam1	UTSW	17	56,578,897 (GRCm39)	missense	probably benign	0.00
R1893:Ticam1	UTSW	17	56,578,894 (GRCm39)	missense	probably benign	0.36
R1980:Ticam1	UTSW	17	56,578,555 (GRCm39)	missense	probably damaging	0.99
R1981:Ticam1	UTSW	17	56,578,555 (GRCm39)	missense	probably damaging	0.99
R1982:Ticam1	UTSW	17	56,578,555 (GRCm39)	missense	probably damaging	0.99
R2263:Ticam1	UTSW	17	56,578,888 (GRCm39)	missense	possibly damaging	0.95
R2513:Ticam1	UTSW	17	56,578,612 (GRCm39)	missense	possibly damaging	0.61
R4294:Ticam1	UTSW	17	56,578,339 (GRCm39)	missense	probably benign	0.06
R4888:Ticam1	UTSW	17	56,578,642 (GRCm39)	missense	probably damaging	0.98
R4982:Ticam1	UTSW	17	56,579,020 (GRCm39)	missense	probably benign	0.10
R5396:Ticam1	UTSW	17	56,578,117 (GRCm39)	missense	probably benign	0.02
R5604:Ticam1	UTSW	17	56,578,756 (GRCm39)	missense	probably benign	0.13
R5641:Ticam1	UTSW	17	56,577,629 (GRCm39)	frame shift	probably null
R5647:Ticam1	UTSW	17	56,577,629 (GRCm39)	frame shift	probably null
R5648:Ticam1	UTSW	17	56,577,629 (GRCm39)	frame shift	probably null
R5657:Ticam1	UTSW	17	56,577,629 (GRCm39)	frame shift	probably null
R5770:Ticam1	UTSW	17	56,577,629 (GRCm39)	frame shift	probably null
R5771:Ticam1	UTSW	17	56,577,629 (GRCm39)	frame shift	probably null
R5964:Ticam1	UTSW	17	56,578,703 (GRCm39)	missense	probably damaging	0.99
R6217:Ticam1	UTSW	17	56,577,730 (GRCm39)	missense	probably damaging	1.00
R6983:Ticam1	UTSW	17	56,576,900 (GRCm39)	missense	probably benign	0.00
R6984:Ticam1	UTSW	17	56,576,900 (GRCm39)	missense	probably benign	0.00
R6985:Ticam1	UTSW	17	56,576,900 (GRCm39)	missense	probably benign	0.00
R6986:Ticam1	UTSW	17	56,576,900 (GRCm39)	missense	probably benign	0.00
R6987:Ticam1	UTSW	17	56,576,900 (GRCm39)	missense	probably benign	0.00
R6988:Ticam1	UTSW	17	56,576,900 (GRCm39)	missense	probably benign	0.00
R6989:Ticam1	UTSW	17	56,576,900 (GRCm39)	missense	probably benign	0.00
R7029:Ticam1	UTSW	17	56,578,154 (GRCm39)	missense	possibly damaging	0.51
R7684:Ticam1	UTSW	17	56,576,984 (GRCm39)	missense	unknown
R7755:Ticam1	UTSW	17	56,577,182 (GRCm39)	missense	unknown
R7885:Ticam1	UTSW	17	56,578,067 (GRCm39)	missense	probably benign	0.04
R8021:Ticam1	UTSW	17	56,577,089 (GRCm39)	missense	unknown
R8414:Ticam1	UTSW	17	56,578,340 (GRCm39)	missense	probably benign	0.00
R8822:Ticam1	UTSW	17	56,578,444 (GRCm39)	missense	probably damaging	1.00
R9442:Ticam1	UTSW	17	56,577,428 (GRCm39)	missense	probably benign	0.00
R9521:Ticam1	UTSW	17	56,578,388 (GRCm39)	missense	probably benign	0.07
V8831:Ticam1	UTSW	17	56,576,969 (GRCm39)	frame shift	probably null

Predicted Primers

PCR Primer
(F):5'- GTTTCTGAGTGGTCCAAAACAG -3'
(R):5'- TGAGGAGATAAGCTGGCCTC -3'

Sequencing Primer
(F):5'- TGGTCCAAAACAGGGGATGTG -3'
(R):5'- AGATAAGCTGGCCTCCATCAGTG -3'

Posted On

2017-03-31