Mutagenetix > Incidental Mutation

Incidental Mutation 'R5975:Dhx58'

471707

Institutional Source

Beutler Lab

Gene Symbol

Dhx58

Ensembl Gene

ENSMUSG00000017830

Gene Name

DExH-box helicase 58

Synonyms

D11Lgp2e, B430001I08Rik, LPG2

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.159) question?

Stock #

R5975 (G1)

Quality Score

224

Status

Validated

Chromosome

Chromosomal Location

100585710-100595097 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 100593035 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Leucine at position 224 (R224L)

Ref Sequence

ENSEMBL: ENSMUSP00000017974 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000006973] [ENSMUST00000017974] [ENSMUST00000103118]

AlphaFold

Q99J87

Predicted Effect

probably benign
Transcript: ENSMUST00000006973

SMART Domains

Protein: ENSMUSP00000006973
Gene: ENSMUSG00000020918

Domain	Start	End	E-Value	Type
low complexity region	21	72	N/A	INTRINSIC
Pfam:PCAF_N	81	332	1.2e-155	PFAM
low complexity region	398	417	N/A	INTRINSIC
Pfam:Acetyltransf_7	538	621	5e-13	PFAM
Pfam:Acetyltransf_1	545	620	3.2e-11	PFAM
low complexity region	659	675	N/A	INTRINSIC
BROMO	718	826	6.87e-38	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000017974
AA Change: R224L

PolyPhen 2 Score 0.975 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000017974
Gene: ENSMUSG00000017830
AA Change: R224L

Domain	Start	End	E-Value	Type
DEXDc	2	207	2.86e-22	SMART
HELICc	387	475	3.85e-14	SMART
Blast:HELICc	497	543	4e-12	BLAST
Pfam:RIG-I_C-RD	552	667	1.5e-37	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000103118

SMART Domains

Protein: ENSMUSP00000099407
Gene: ENSMUSG00000020918

Domain	Start	End	E-Value	Type
low complexity region	21	72	N/A	INTRINSIC
Pfam:PCAF_N	81	331	4.4e-120	PFAM
low complexity region	398	417	N/A	INTRINSIC
Pfam:Acetyltransf_7	539	622	1.2e-11	PFAM
Pfam:Acetyltransf_1	547	621	3.1e-11	PFAM
low complexity region	660	676	N/A	INTRINSIC
BROMO	719	827	6.87e-38	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000126167

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000126299

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000132930

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000137154

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000150656

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000153526

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000149869

Meta Mutation Damage Score

0.6452

Coding Region Coverage

1x: 99.9%
3x: 99.5%
10x: 97.8%
20x: 93.3%

Validation Efficiency

98% (80/82)

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit increased susceptibility to EMCV infection and decreased susceptibility to VSV infection. Mice homozygous for a different knock-out allele exhibit increased susceptibility to WNV infection. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9430038I01Rik	T	C	7: 136,989,021 (GRCm39)		probably benign	Het
Abhd14a	A	T	9: 106,321,150 (GRCm39)		probably null	Het
Actn2	T	C	13: 12,355,378 (GRCm39)	N2D	probably benign	Het
Adcy9	T	C	16: 4,129,431 (GRCm39)	E722G	probably damaging	Het
Alox12	C	A	11: 70,133,609 (GRCm39)	V572L	possibly damaging	Het
Ankrd11	T	C	8: 123,616,488 (GRCm39)	I2434V	possibly damaging	Het
Anks1	T	A	17: 28,210,421 (GRCm39)		probably null	Het
Bltp1	C	T	3: 37,023,370 (GRCm39)	T2233I	possibly damaging	Het
Bpifa3	T	A	2: 153,978,241 (GRCm39)	S148T	probably damaging	Het
Bptf	C	T	11: 106,926,690 (GRCm39)		probably benign	Het
Cabin1	A	T	10: 75,493,673 (GRCm39)	L1655H	probably damaging	Het
Ccdc13	G	T	9: 121,656,301 (GRCm39)	Q171K	probably benign	Het
Ccdc33	T	A	9: 58,024,761 (GRCm39)	Q155L	possibly damaging	Het
Cckbr	G	A	7: 105,119,826 (GRCm39)	G280E	probably benign	Het
Cdk11b	G	A	4: 155,732,697 (GRCm39)		probably benign	Het
Celsr1	G	T	15: 85,803,239 (GRCm39)		probably null	Het
Cenpj	A	T	14: 56,801,523 (GRCm39)	I150N	possibly damaging	Het
Cep135	C	A	5: 76,788,737 (GRCm39)	A1110E	possibly damaging	Het
Chit1	C	A	1: 134,074,364 (GRCm39)	H224N	probably damaging	Het
Cul5	T	C	9: 53,534,093 (GRCm39)	R680G	probably damaging	Het
Dlx1	C	A	2: 71,361,353 (GRCm39)	N122K	probably damaging	Het
Dnah5	A	C	15: 28,234,428 (GRCm39)	D279A	probably damaging	Het
Dnai4	G	A	4: 102,906,786 (GRCm39)	P676S	probably benign	Het
Efcab3	A	G	11: 104,578,375 (GRCm39)		probably benign	Het
Enpp3	A	G	10: 24,650,740 (GRCm39)	W799R	probably benign	Het
Ercc5	A	G	1: 44,212,566 (GRCm39)	T675A	probably benign	Het
Farsa	T	A	8: 85,591,061 (GRCm39)		probably null	Het
Fbxw15	A	T	9: 109,384,320 (GRCm39)	V397D	probably damaging	Het
Fcrl5	G	A	3: 87,349,410 (GRCm39)	V62I	probably benign	Het
Gart	A	G	16: 91,421,224 (GRCm39)	S815P	probably damaging	Het
Glrx5	A	G	12: 105,006,582 (GRCm39)	N111S	possibly damaging	Het
Gm10845	A	G	14: 80,100,614 (GRCm39)		noncoding transcript	Het
Gm9925	T	A	18: 74,198,587 (GRCm39)		probably benign	Het
Gsdme	T	C	6: 50,204,339 (GRCm39)	N206S	probably benign	Het
Helz2	T	C	2: 180,872,843 (GRCm39)	S2459G	probably benign	Het
Hnrnpul1	A	G	7: 25,453,784 (GRCm39)	S93P	possibly damaging	Het
Ints2	A	T	11: 86,117,574 (GRCm39)	I716N	possibly damaging	Het
Lmnb2	G	A	10: 80,740,962 (GRCm39)	Q248*	probably null	Het
Map3k7cl	A	G	16: 87,367,209 (GRCm39)	I32V	probably benign	Het
Mfsd4b4	A	T	10: 39,768,466 (GRCm39)	I255N	probably benign	Het
Myh6	A	G	14: 55,187,965 (GRCm39)	I1163T	probably benign	Het
Nphs1	A	T	7: 30,165,540 (GRCm39)	T636S	possibly damaging	Het
Ntsr1	T	A	2: 180,142,581 (GRCm39)	L124Q	probably damaging	Het
Obscn	C	T	11: 59,013,445 (GRCm39)		probably null	Het
P4ha2	G	A	11: 54,017,238 (GRCm39)		probably null	Het
Pcdha9	T	A	18: 37,132,164 (GRCm39)	V411D	probably benign	Het
Pkhd1l1	A	T	15: 44,389,384 (GRCm39)	I1380F	probably damaging	Het
Plekha1	T	C	7: 130,493,983 (GRCm39)	V106A	probably benign	Het
Plekhm1	A	T	11: 103,267,517 (GRCm39)	V818E	possibly damaging	Het
Pprc1	T	G	19: 46,053,809 (GRCm39)		probably benign	Het
Prb1c	A	G	6: 132,339,036 (GRCm39)	S61P	unknown	Het
Prmt9	T	C	8: 78,287,647 (GRCm39)		probably benign	Het
Rab26	T	C	17: 24,749,373 (GRCm39)	N193D	possibly damaging	Het
Rnf111	A	G	9: 70,336,862 (GRCm39)	S942P	probably damaging	Het
Scgb2b18	T	C	7: 32,872,650 (GRCm39)	T52A	probably damaging	Het
Syt3	C	T	7: 44,042,187 (GRCm39)	Q349*	probably null	Het
Tas2r107	T	C	6: 131,636,743 (GRCm39)	N102S	probably benign	Het
Tas2r126	T	A	6: 42,411,934 (GRCm39)	Y156N	possibly damaging	Het
Tcaf2	A	T	6: 42,619,712 (GRCm39)	I105N	probably benign	Het
Tet1	A	C	10: 62,715,552 (GRCm39)	M81R	probably benign	Het
Togaram2	T	C	17: 72,036,200 (GRCm39)	Y897H	probably damaging	Het
Trerf1	A	T	17: 47,625,197 (GRCm39)		noncoding transcript	Het
Ttn	G	A	2: 76,591,579 (GRCm39)	T12703I	probably damaging	Het
Unc79	A	G	12: 103,091,885 (GRCm39)	K1735E	possibly damaging	Het
Usp54	G	A	14: 20,633,419 (GRCm39)	T372I	possibly damaging	Het
Wdr24	T	C	17: 26,046,102 (GRCm39)	S476P	probably benign	Het
Zbtb1	T	C	12: 76,433,049 (GRCm39)	I345T	possibly damaging	Het
Zcrb1	T	A	15: 93,293,496 (GRCm39)	I29L	probably benign	Het
Zfp341	T	A	2: 154,472,361 (GRCm39)	C315S	probably damaging	Het
Zfp623	C	A	15: 75,820,012 (GRCm39)	R323S	probably benign	Het
Zfp831	T	A	2: 174,485,885 (GRCm39)	Y187N	possibly damaging	Het

Other mutations in Dhx58

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01395:Dhx58	APN	11	100,594,752 (GRCm39)	missense	probably damaging	0.97
IGL02476:Dhx58	APN	11	100,593,090 (GRCm39)	missense	probably benign	0.00
R0103:Dhx58	UTSW	11	100,586,096 (GRCm39)	missense	probably damaging	1.00
R0103:Dhx58	UTSW	11	100,586,096 (GRCm39)	missense	probably damaging	1.00
R0137:Dhx58	UTSW	11	100,587,823 (GRCm39)	missense	probably damaging	0.99
R0164:Dhx58	UTSW	11	100,586,150 (GRCm39)	missense	probably benign	0.42
R0164:Dhx58	UTSW	11	100,586,150 (GRCm39)	missense	probably benign	0.42
R0369:Dhx58	UTSW	11	100,592,374 (GRCm39)	critical splice donor site	probably null
R0390:Dhx58	UTSW	11	100,590,090 (GRCm39)	missense	probably damaging	1.00
R0606:Dhx58	UTSW	11	100,593,077 (GRCm39)	missense	probably benign	0.00
R1710:Dhx58	UTSW	11	100,594,400 (GRCm39)	missense	probably benign	0.20
R1816:Dhx58	UTSW	11	100,593,978 (GRCm39)	missense	probably damaging	0.98
R1993:Dhx58	UTSW	11	100,594,316 (GRCm39)	splice site	probably null
R2281:Dhx58	UTSW	11	100,588,980 (GRCm39)	critical splice donor site	probably null
R3176:Dhx58	UTSW	11	100,587,805 (GRCm39)	missense	probably damaging	1.00
R3276:Dhx58	UTSW	11	100,587,805 (GRCm39)	missense	probably damaging	1.00
R4651:Dhx58	UTSW	11	100,592,185 (GRCm39)	missense	probably damaging	1.00
R4652:Dhx58	UTSW	11	100,592,185 (GRCm39)	missense	probably damaging	1.00
R4716:Dhx58	UTSW	11	100,587,797 (GRCm39)	splice site	probably null
R5030:Dhx58	UTSW	11	100,586,963 (GRCm39)	missense	probably damaging	1.00
R5082:Dhx58	UTSW	11	100,587,802 (GRCm39)	missense	probably benign	0.29
R5098:Dhx58	UTSW	11	100,585,999 (GRCm39)	missense	probably benign
R5394:Dhx58	UTSW	11	100,589,034 (GRCm39)	missense	probably benign	0.00
R5397:Dhx58	UTSW	11	100,594,746 (GRCm39)	missense	probably damaging	1.00
R5787:Dhx58	UTSW	11	100,592,145 (GRCm39)	missense	possibly damaging	0.91
R6310:Dhx58	UTSW	11	100,590,193 (GRCm39)	missense	probably benign	0.01
R6935:Dhx58	UTSW	11	100,589,232 (GRCm39)	splice site	probably null
R7311:Dhx58	UTSW	11	100,588,997 (GRCm39)	missense	probably benign
R7908:Dhx58	UTSW	11	100,586,130 (GRCm39)	missense	probably damaging	0.99
R8317:Dhx58	UTSW	11	100,594,388 (GRCm39)	missense	probably damaging	1.00
R8821:Dhx58	UTSW	11	100,594,806 (GRCm39)	missense	probably damaging	1.00
R8831:Dhx58	UTSW	11	100,594,806 (GRCm39)	missense	probably damaging	1.00
R9717:Dhx58	UTSW	11	100,592,133 (GRCm39)	missense	probably benign	0.02

Predicted Primers

PCR Primer
(F):5'- AGACTATGGACTTGGGCTATGG -3'
(R):5'- TAACTTCCAGTGGAGTGGCC -3'

Sequencing Primer
(F):5'- GCTATGGGTGCCTCAAAGC -3'
(R):5'- GCTTTTCTGTCCTTAGCCAGG -3'

Posted On

2017-03-31