Mutagenetix > Incidental Mutation

Incidental Mutation 'R5963:Nom1'

471868

Institutional Source

Beutler Lab

Gene Symbol

Nom1

Ensembl Gene

ENSMUSG00000001569

Gene Name

nucleolar protein with MIF4G domain 1

Synonyms

LOC381627, D5Kng1, Gm1040

MMRRC Submission

044148-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R5963 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

29637338-29658504 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 29642768 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Proline at position 423 (L423P)

Ref Sequence

ENSEMBL: ENSMUSP00000001611 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000001611]

AlphaFold

Q3UFM5

Predicted Effect

probably damaging
Transcript: ENSMUST00000001611
AA Change: L423P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000001611
Gene: ENSMUSG00000001569
AA Change: L423P

Domain	Start	End	E-Value	Type
low complexity region	79	98	N/A	INTRINSIC
low complexity region	102	114	N/A	INTRINSIC
low complexity region	119	147	N/A	INTRINSIC
coiled coil region	170	197	N/A	INTRINSIC
low complexity region	227	250	N/A	INTRINSIC
low complexity region	311	326	N/A	INTRINSIC
MIF4G	356	553	1.1e-21	SMART
MA3	649	755	1.59e-22	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000146347

Meta Mutation Damage Score

0.9196

Coding Region Coverage

1x: 99.9%
3x: 99.5%
10x: 97.7%
20x: 92.5%

Validation Efficiency

99% (68/69)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Proteins that contain MIF4G (middle of eIF4G (MIM 600495)) and/or MA3 domains, such as NOM1, function in protein translation. These domains include binding sites for members of the EIF4A family of ATP-dependent DEAD box RNA helicases (see EIF4A1; MIM 602641) (Simmons et al., 2005 [PubMed 15715967]).[supplied by OMIM, Mar 2008]

Allele List at MGI

Other mutations in this stock

Total: 55 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Alg8	A	G	7: 97,029,037 (GRCm39)	K131E	probably benign	Het
Ank3	T	A	10: 69,823,056 (GRCm39)	L575*	probably null	Het
Aqr	T	C	2: 113,957,442 (GRCm39)	T819A	probably damaging	Het
Bbs2	A	T	8: 94,807,659 (GRCm39)	S407T	probably benign	Het
Bmper	T	A	9: 23,286,889 (GRCm39)	C272S	probably benign	Het
Btbd9	C	T	17: 30,553,192 (GRCm39)		probably null	Het
C5ar1	A	G	7: 15,982,747 (GRCm39)	V91A	possibly damaging	Het
Ccdc138	A	G	10: 58,411,579 (GRCm39)	H649R	possibly damaging	Het
Cfap43	A	T	19: 47,734,013 (GRCm39)	V1451E	probably benign	Het
Cfap46	T	A	7: 139,231,511 (GRCm39)	M901L	probably damaging	Het
Cherp	G	T	8: 73,215,379 (GRCm39)		probably benign	Het
D430041D05Rik	C	T	2: 104,078,630 (GRCm39)	V1229I	possibly damaging	Het
Fat4	A	C	3: 39,064,696 (GRCm39)	D4884A	probably damaging	Het
Fcrl5	T	C	3: 87,351,480 (GRCm39)	F243L	probably damaging	Het
Garem1	T	A	18: 21,262,487 (GRCm39)	I776F	probably benign	Het
Gpr87	T	A	3: 59,086,690 (GRCm39)	R272*	probably null	Het
Gsdmc	A	T	15: 63,651,965 (GRCm39)		probably null	Het
Hydin	T	A	8: 111,220,926 (GRCm39)	F1441I	possibly damaging	Het
Ints11	T	A	4: 155,957,369 (GRCm39)	C63*	probably null	Het
Kdm4b	A	T	17: 56,706,732 (GRCm39)	T908S	probably damaging	Het
Lipn	A	G	19: 34,058,700 (GRCm39)	D304G	probably damaging	Het
Man2a1	T	G	17: 64,982,117 (GRCm39)	N544K	probably benign	Het
Mapkapk5	G	T	5: 121,676,544 (GRCm39)	H66N	probably damaging	Het
Mog	G	A	17: 37,323,240 (GRCm39)	R233*	probably null	Het
Mrps24	A	T	11: 5,657,481 (GRCm39)		probably benign	Het
Or51b6	T	A	7: 103,556,168 (GRCm39)	V174E	probably benign	Het
Pcdha1	T	A	18: 37,064,224 (GRCm39)	V296E	probably damaging	Het
Pdcd2	T	C	17: 15,746,656 (GRCm39)	K168E	possibly damaging	Het
Pdcd2	G	T	17: 15,746,657 (GRCm39)	H167Q	probably damaging	Het
Pla2g12b	T	A	10: 59,239,780 (GRCm39)	V63D	probably damaging	Het
Pnn	C	T	12: 59,114,617 (GRCm39)	R56*	probably null	Het
Primpol	T	A	8: 47,046,615 (GRCm39)	E227V	possibly damaging	Het
Rad54l	A	T	4: 115,967,584 (GRCm39)	W233R	probably damaging	Het
Rims2	A	T	15: 39,300,578 (GRCm39)	D103V	probably damaging	Het
Rttn	T	C	18: 89,091,819 (GRCm39)	S1511P	probably benign	Het
Septin5	T	C	16: 18,442,962 (GRCm39)		probably null	Het
Simc1	T	A	13: 54,673,632 (GRCm39)	I660K	possibly damaging	Het
Slc15a5	A	G	6: 138,056,691 (GRCm39)	L75P	probably damaging	Het
Slc9a2	A	G	1: 40,721,196 (GRCm39)	S55G	possibly damaging	Het
Slit3	C	T	11: 35,591,063 (GRCm39)	R1292C	probably damaging	Het
Slitrk3	A	G	3: 72,958,046 (GRCm39)	V242A	probably benign	Het
St14	A	T	9: 31,017,853 (GRCm39)		probably benign	Het
Tnnt2	T	C	1: 135,771,600 (GRCm39)		probably benign	Het
Traf5	G	A	1: 191,731,977 (GRCm39)	T288I	probably benign	Het
Trerf1	C	T	17: 47,625,263 (GRCm39)		noncoding transcript	Het
Vegfc	A	G	8: 54,634,319 (GRCm39)	N333D	probably benign	Het
Vmn1r65	T	A	7: 6,011,608 (GRCm39)	I209F	probably damaging	Het
Vps51	A	G	19: 6,118,320 (GRCm39)	L725P	probably damaging	Het
Vps8	T	C	16: 21,288,871 (GRCm39)	I408T	possibly damaging	Het
Wdr72	T	C	9: 74,052,310 (GRCm39)	Y114H	probably damaging	Het
Ybx2	A	G	11: 69,831,918 (GRCm39)	E164G	probably damaging	Het
Zcchc14	A	T	8: 122,355,362 (GRCm39)		probably benign	Het
Zfp383	A	G	7: 29,615,103 (GRCm39)	T453A	possibly damaging	Het
Zfp84	G	T	7: 29,476,378 (GRCm39)	G357C	probably damaging	Het
Zmynd11	G	T	13: 9,745,931 (GRCm39)		probably benign	Het

Other mutations in Nom1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01475:Nom1	APN	5	29,651,272 (GRCm39)	missense	possibly damaging	0.74
IGL01795:Nom1	APN	5	29,651,869 (GRCm39)	missense	probably benign	0.06
IGL02308:Nom1	APN	5	29,642,708 (GRCm39)	missense	probably damaging	1.00
IGL02378:Nom1	APN	5	29,656,124 (GRCm39)	nonsense	probably null
IGL02506:Nom1	APN	5	29,644,814 (GRCm39)	splice site	probably benign
R0633:Nom1	UTSW	5	29,656,098 (GRCm39)	missense	probably damaging	1.00
R0652:Nom1	UTSW	5	29,640,309 (GRCm39)	missense	probably damaging	1.00
R1571:Nom1	UTSW	5	29,647,633 (GRCm39)	nonsense	probably null
R1707:Nom1	UTSW	5	29,640,316 (GRCm39)	missense	probably damaging	0.99
R1852:Nom1	UTSW	5	29,651,876 (GRCm39)	missense	possibly damaging	0.46
R2025:Nom1	UTSW	5	29,651,849 (GRCm39)	missense	probably damaging	1.00
R2196:Nom1	UTSW	5	29,641,019 (GRCm39)	missense	probably benign	0.00
R2207:Nom1	UTSW	5	29,644,972 (GRCm39)	missense	probably damaging	1.00
R2256:Nom1	UTSW	5	29,642,750 (GRCm39)	missense	probably damaging	1.00
R2257:Nom1	UTSW	5	29,642,750 (GRCm39)	missense	probably damaging	1.00
R2680:Nom1	UTSW	5	29,648,415 (GRCm39)	missense	probably damaging	1.00
R3439:Nom1	UTSW	5	29,640,615 (GRCm39)	missense	probably benign	0.01
R4291:Nom1	UTSW	5	29,651,370 (GRCm39)	critical splice donor site	probably null
R4587:Nom1	UTSW	5	29,656,163 (GRCm39)	missense	possibly damaging	0.91
R5374:Nom1	UTSW	5	29,646,377 (GRCm39)	missense	probably damaging	1.00
R5761:Nom1	UTSW	5	29,642,639 (GRCm39)	missense	probably damaging	1.00
R5772:Nom1	UTSW	5	29,651,873 (GRCm39)	missense	possibly damaging	0.81
R5828:Nom1	UTSW	5	29,640,124 (GRCm39)	missense	possibly damaging	0.53
R6208:Nom1	UTSW	5	29,654,617 (GRCm39)	missense	possibly damaging	0.83
R7234:Nom1	UTSW	5	29,640,451 (GRCm39)	missense	probably benign	0.01
R7476:Nom1	UTSW	5	29,647,534 (GRCm39)	missense	probably benign	0.29
R8848:Nom1	UTSW	5	29,645,137 (GRCm39)	missense	probably damaging	1.00
R9018:Nom1	UTSW	5	29,639,712 (GRCm39)	missense	possibly damaging	0.53
R9284:Nom1	UTSW	5	29,647,532 (GRCm39)	missense	probably damaging	0.99
R9390:Nom1	UTSW	5	29,639,766 (GRCm39)	missense	probably benign
R9608:Nom1	UTSW	5	29,642,750 (GRCm39)	missense	probably damaging	1.00
R9681:Nom1	UTSW	5	29,642,623 (GRCm39)	missense	probably damaging	0.99
Z1177:Nom1	UTSW	5	29,654,676 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- GGTTGAGTGAGCCAAACATG -3'
(R):5'- ATAGCCCTTGGTGGAGAGATG -3'

Sequencing Primer
(F):5'- CCAAACATGGCTTCTATAAGTGGGC -3'
(R):5'- CAATTCCTAAGGTAGCCAGGGTAGTC -3'

Posted On

2017-03-31