Mutagenetix > Incidental Mutation

Incidental Mutation 'R5964:Cog7'

471949

Institutional Source

Beutler Lab

Gene Symbol

Cog7

Ensembl Gene

ENSMUSG00000034951

Gene Name

component of oligomeric golgi complex 7

Synonyms

5630400E24Rik

MMRRC Submission

044149-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R5964 (G1)

Quality Score

101

Status

Validated

Chromosome

Chromosomal Location

121522059-121580940 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 121555252 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Glycine at position 304 (R304G)

Ref Sequence

ENSEMBL: ENSMUSP00000058990 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000057576] [ENSMUST00000205438]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000057576
AA Change: R304G

PolyPhen 2 Score 0.988 (Sensitivity: 0.73; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000058990
Gene: ENSMUSG00000034951
AA Change: R304G

Domain	Start	End	E-Value	Type
Pfam:COG7	2	767	N/A	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000148634

Predicted Effect

probably damaging
Transcript: ENSMUST00000205438
AA Change: R304G

PolyPhen 2 Score 0.978 (Sensitivity: 0.76; Specificity: 0.96)

Meta Mutation Damage Score

0.4879

Coding Region Coverage

1x: 99.9%
3x: 99.5%
10x: 97.5%
20x: 92.2%

Validation Efficiency

96% (87/91)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene resides in the golgi, and constitutes one of the 8 subunits of the conserved oligomeric Golgi (COG) complex, which is required for normal golgi morphology and localization. Mutations in this gene are associated with the congenital disorder of glycosylation type IIe.[provided by RefSeq, May 2010]

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam15	G	A	3: 89,250,874 (GRCm39)	Q581*	probably null	Het
Agl	A	G	3: 116,587,423 (GRCm39)	V44A	probably damaging	Het
Alpk3	T	A	7: 80,742,008 (GRCm39)	D608E	possibly damaging	Het
Aspm	C	A	1: 139,382,965 (GRCm39)		probably benign	Het
Bbs2	T	C	8: 94,794,995 (GRCm39)	N692S	probably benign	Het
Bend4	A	G	5: 67,575,161 (GRCm39)	I240T	probably benign	Het
Casp8	G	T	1: 58,872,895 (GRCm39)	R277L	possibly damaging	Het
Ccdc61	A	T	7: 18,634,865 (GRCm39)	I123N	probably damaging	Het
Ccr9	T	G	9: 123,608,499 (GRCm39)	I60M	probably benign	Het
Cd163	T	A	6: 124,303,531 (GRCm39)	W1066R	probably benign	Het
Cd226	A	T	18: 89,225,307 (GRCm39)	H68L	probably benign	Het
Cdkn3	T	A	14: 47,004,674 (GRCm39)	C79S	probably null	Het
Cnnm1	A	T	19: 43,458,162 (GRCm39)	E658V	probably benign	Het
Cpt1a	T	A	19: 3,415,760 (GRCm39)	V286E	possibly damaging	Het
Creg2	C	A	1: 39,664,122 (GRCm39)	R212L	probably benign	Het
Cyp26a1	T	G	19: 37,688,410 (GRCm39)	S311A	probably damaging	Het
Cyp2b10	T	C	7: 25,625,648 (GRCm39)	Y484H	probably benign	Het
Cyp3a44	T	A	5: 145,725,277 (GRCm39)	Y308F	possibly damaging	Het
Dlg5	A	G	14: 24,214,157 (GRCm39)	V744A	probably benign	Het
Dlgap2	T	A	8: 14,777,128 (GRCm39)	Y124*	probably null	Het
Dnah3	T	C	7: 119,522,103 (GRCm39)	D4030G	probably benign	Het
Dnah5	A	G	15: 28,458,730 (GRCm39)	T4456A	possibly damaging	Het
Dtx2	T	A	5: 136,052,553 (GRCm39)	V347D	probably benign	Het
Gigyf2	C	T	1: 87,334,889 (GRCm39)	T294M	probably damaging	Het
Gli3	C	G	13: 15,900,747 (GRCm39)	S1378*	probably null	Het
Gnao1	G	A	8: 94,693,627 (GRCm39)	D337N	probably benign	Het
Gp2	T	A	7: 119,048,352 (GRCm39)	Q422L	probably benign	Het
Ifit1	T	A	19: 34,625,869 (GRCm39)	M335K	possibly damaging	Het
Ism1	T	C	2: 139,520,677 (GRCm39)	S30P	probably benign	Het
Itgax	A	G	7: 127,739,619 (GRCm39)	D677G	probably damaging	Het
Kansl1l	G	A	1: 66,765,081 (GRCm39)	A442V	probably damaging	Het
Kif13a	T	C	13: 46,925,000 (GRCm39)	I311M	probably damaging	Het
Lrrc37	A	G	11: 103,432,946 (GRCm39)	S1232P	possibly damaging	Het
Lsm14b	T	A	2: 179,673,218 (GRCm39)	S84R	probably benign	Het
Lzts3	A	G	2: 130,478,208 (GRCm39)	Y297H	probably damaging	Het
Map4k3	A	G	17: 80,952,191 (GRCm39)	I205T	probably damaging	Het
Matn2	A	T	15: 34,410,311 (GRCm39)	N501I	probably damaging	Het
Mctp2	T	C	7: 71,752,925 (GRCm39)	E776G	probably damaging	Het
Mex3d	A	T	10: 80,218,421 (GRCm39)	N265K	probably damaging	Het
Myo5a	A	G	9: 75,111,115 (GRCm39)	T1534A	probably benign	Het
Ncoa7	T	C	10: 30,580,632 (GRCm39)	M35V	probably damaging	Het
Nek4	G	A	14: 30,679,036 (GRCm39)		probably null	Het
Ngrn	T	C	7: 79,911,681 (GRCm39)		probably null	Het
Nlrp1a	T	A	11: 71,013,846 (GRCm39)	Q468L	probably benign	Het
Or11g27	T	A	14: 50,771,655 (GRCm39)	M262K	probably damaging	Het
Or5b98	A	C	19: 12,931,895 (GRCm39)	Q314P	probably benign	Het
Phtf2	T	C	5: 20,980,932 (GRCm39)	D433G	probably damaging	Het
Prdm13	G	A	4: 21,683,852 (GRCm39)	Q140*	probably null	Het
Prtg	G	A	9: 72,799,536 (GRCm39)	G778E	probably benign	Het
Pum3	T	C	19: 27,397,451 (GRCm39)	E308G	probably damaging	Het
Pwp1	T	G	10: 85,718,750 (GRCm39)	F306V	probably damaging	Het
Rab24	A	T	13: 55,469,389 (GRCm39)	Y27N	probably damaging	Het
Rnf215	T	C	11: 4,085,898 (GRCm39)	F126L	probably benign	Het
Samd13	A	T	3: 146,386,451 (GRCm39)		probably benign	Het
Serac1	T	A	17: 6,115,324 (GRCm39)	H213L	probably benign	Het
Slc45a3	A	G	1: 131,905,811 (GRCm39)	E278G	probably damaging	Het
Slit3	C	T	11: 35,591,063 (GRCm39)	R1292C	probably damaging	Het
Slx4	A	T	16: 3,818,815 (GRCm39)		probably null	Het
Smarca4	C	A	9: 21,558,726 (GRCm39)	T631K	probably benign	Het
Snx16	C	T	3: 10,499,541 (GRCm39)	R163Q	possibly damaging	Het
Stk40	T	C	4: 126,022,688 (GRCm39)	V140A	probably damaging	Het
Tcf12	A	T	9: 71,775,522 (GRCm39)	D409E	probably damaging	Het
Tgfbr2	G	T	9: 115,939,323 (GRCm39)	T168K	possibly damaging	Het
Ticam1	G	T	17: 56,578,703 (GRCm39)	H131N	probably damaging	Het
Ttn	C	A	2: 76,660,232 (GRCm39)	R7458I	possibly damaging	Het
Ttn	C	A	2: 76,543,855 (GRCm39)	E31298*	probably null	Het
Usp7	A	G	16: 8,529,966 (GRCm39)	V133A	possibly damaging	Het
Wbp1l	C	T	19: 46,642,619 (GRCm39)	R191*	probably null	Het
Wdfy4	T	C	14: 32,827,968 (GRCm39)	E1118G	probably damaging	Het
Zfp81	G	C	17: 33,555,819 (GRCm39)	P3A	probably damaging	Het
Znhit6	A	G	3: 145,282,688 (GRCm39)	K21R	possibly damaging	Het

Other mutations in Cog7

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02023:Cog7	APN	7	121,543,000 (GRCm39)	critical splice donor site	probably null
IGL02094:Cog7	APN	7	121,562,470 (GRCm39)	missense	probably benign	0.21
IGL02113:Cog7	APN	7	121,524,703 (GRCm39)	missense	probably damaging	1.00
IGL02151:Cog7	APN	7	121,543,031 (GRCm39)	missense	probably damaging	0.97
IGL02365:Cog7	APN	7	121,576,959 (GRCm39)	missense	possibly damaging	0.56
IGL02398:Cog7	APN	7	121,563,432 (GRCm39)	missense	probably damaging	1.00
IGL02732:Cog7	APN	7	121,522,590 (GRCm39)	missense	probably benign	0.05
IGL02887:Cog7	APN	7	121,543,067 (GRCm39)	missense	possibly damaging	0.83
R0143:Cog7	UTSW	7	121,550,387 (GRCm39)	missense	probably damaging	1.00
R0446:Cog7	UTSW	7	121,536,295 (GRCm39)	missense	probably benign
R0521:Cog7	UTSW	7	121,540,392 (GRCm39)	critical splice donor site	probably null
R0526:Cog7	UTSW	7	121,562,494 (GRCm39)	splice site	probably null
R0658:Cog7	UTSW	7	121,555,363 (GRCm39)	splice site	probably benign
R0782:Cog7	UTSW	7	121,543,020 (GRCm39)	missense	possibly damaging	0.86
R1029:Cog7	UTSW	7	121,529,752 (GRCm39)	critical splice donor site	probably null
R1419:Cog7	UTSW	7	121,555,215 (GRCm39)	missense	probably damaging	0.99
R1521:Cog7	UTSW	7	121,529,797 (GRCm39)	missense	possibly damaging	0.57
R1639:Cog7	UTSW	7	121,580,642 (GRCm39)	missense	probably damaging	1.00
R2023:Cog7	UTSW	7	121,536,193 (GRCm39)	missense	probably damaging	0.99
R3896:Cog7	UTSW	7	121,540,392 (GRCm39)	critical splice donor site	probably benign
R4240:Cog7	UTSW	7	121,524,707 (GRCm39)	missense	possibly damaging	0.50
R4731:Cog7	UTSW	7	121,563,467 (GRCm39)	missense	probably benign	0.00
R4732:Cog7	UTSW	7	121,563,467 (GRCm39)	missense	probably benign	0.00
R4733:Cog7	UTSW	7	121,563,467 (GRCm39)	missense	probably benign	0.00
R4838:Cog7	UTSW	7	121,570,604 (GRCm39)	missense	probably damaging	1.00
R5001:Cog7	UTSW	7	121,549,109 (GRCm39)	missense	probably damaging	1.00
R5237:Cog7	UTSW	7	121,550,444 (GRCm39)	missense	probably damaging	1.00
R5353:Cog7	UTSW	7	121,540,470 (GRCm39)	splice site	probably null
R5609:Cog7	UTSW	7	121,524,683 (GRCm39)	missense	probably benign	0.12
R6544:Cog7	UTSW	7	121,534,966 (GRCm39)	missense	probably damaging	0.99
R6784:Cog7	UTSW	7	121,563,516 (GRCm39)	splice site	probably null
R7110:Cog7	UTSW	7	121,534,999 (GRCm39)	missense	probably damaging	0.98
R7212:Cog7	UTSW	7	121,576,537 (GRCm39)	missense	probably damaging	0.98
R7304:Cog7	UTSW	7	121,536,362 (GRCm39)	missense	probably benign	0.04
R8185:Cog7	UTSW	7	121,576,969 (GRCm39)	missense	probably damaging	1.00
R8207:Cog7	UTSW	7	121,576,515 (GRCm39)	missense	possibly damaging	0.70
R8838:Cog7	UTSW	7	121,549,106 (GRCm39)	missense	probably damaging	0.98
R9116:Cog7	UTSW	7	121,570,561 (GRCm39)	missense	probably damaging	0.99
R9582:Cog7	UTSW	7	121,536,200 (GRCm39)	missense	probably benign	0.00
R9752:Cog7	UTSW	7	121,580,639 (GRCm39)	critical splice donor site	probably null
X0066:Cog7	UTSW	7	121,576,847 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GGAGAGACACCGACTCTTTC -3'
(R):5'- TAGGGTCTGCCTTGGAACATC -3'

Sequencing Primer
(F):5'- TTCCCTTCCACAGTTACTAGAAACAG -3'
(R):5'- TCTGCCTTGGAACATCAGGAGAC -3'

Posted On

2017-03-31