Incidental Mutation 'R5947:Nek2'
ID 472207
Institutional Source Beutler Lab
Gene Symbol Nek2
Ensembl Gene ENSMUSG00000026622
Gene Name NIMA (never in mitosis gene a)-related expressed kinase 2
Synonyms
MMRRC Submission 044138-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R5947 (G1)
Quality Score 181
Status Validated
Chromosome 1
Chromosomal Location 191553556-191565162 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 191561597 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Glutamic Acid to Glycine at position 360 (E360G)
Ref Sequence ENSEMBL: ENSMUSP00000027931 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000027931]
AlphaFold O35942
Predicted Effect probably benign
Transcript: ENSMUST00000027931
AA Change: E360G

PolyPhen 2 Score 0.170 (Sensitivity: 0.92; Specificity: 0.87)
SMART Domains Protein: ENSMUSP00000027931
Gene: ENSMUSG00000026622
AA Change: E360G

DomainStartEndE-ValueType
S_TKc 8 271 5.59e-86 SMART
low complexity region 277 292 N/A INTRINSIC
coiled coil region 339 355 N/A INTRINSIC
low complexity region 414 426 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000126446
Predicted Effect noncoding transcript
Transcript: ENSMUST00000136733
Predicted Effect noncoding transcript
Transcript: ENSMUST00000150839
Meta Mutation Damage Score 0.0862 question?
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 97.8%
  • 20x: 93.1%
Validation Efficiency 100% (70/70)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a serine/threonine-protein kinase that is involved in mitotic regulation. This protein is localized to the centrosome, and undetectable during G1 phase, but accumulates progressively throughout the S phase, reaching maximal levels in late G2 phase. Alternatively spliced transcript variants encoding different isoforms with distinct C-termini have been noted for this gene. [provided by RefSeq, Feb 2011]
Allele List at MGI
Other mutations in this stock
Total: 60 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abcb10 T C 8: 124,694,737 (GRCm39) probably null Het
Abt1 T C 13: 23,606,225 (GRCm39) E243G possibly damaging Het
Afap1l1 A G 18: 61,876,771 (GRCm39) S361P probably damaging Het
Alms1 T C 6: 85,596,694 (GRCm39) S507P probably benign Het
Atp13a3 A G 16: 30,181,518 (GRCm39) V34A probably benign Het
Atpaf2 A T 11: 60,296,708 (GRCm39) probably benign Het
Bbs1 A C 19: 4,943,022 (GRCm39) L456R probably benign Het
Bri3bp G T 5: 125,529,217 (GRCm39) G84* probably null Het
Bri3bp G C 5: 125,529,218 (GRCm39) probably benign Het
Car10 A C 11: 93,381,439 (GRCm39) H134P probably damaging Het
Cntrl A G 2: 35,006,691 (GRCm39) E119G probably damaging Het
Cxcl3 C T 5: 90,934,175 (GRCm39) probably benign Het
Dppa4 T C 16: 48,111,471 (GRCm39) V100A possibly damaging Het
Elmo1 G T 13: 20,474,553 (GRCm39) E105* probably null Het
Esrp2 T G 8: 106,859,565 (GRCm39) probably benign Het
Exoc3l4 A G 12: 111,388,835 (GRCm39) K108R possibly damaging Het
Exph5 G A 9: 53,286,522 (GRCm39) R1201H probably benign Het
Galnt3 A C 2: 65,914,500 (GRCm39) probably benign Het
Gm14486 C T 2: 30,548,813 (GRCm39) noncoding transcript Het
Gna12 T A 5: 140,746,717 (GRCm39) I243F probably damaging Het
Itga5 A T 15: 103,265,212 (GRCm39) W232R probably damaging Het
Lekr1 A T 3: 65,680,498 (GRCm39) noncoding transcript Het
Lrp1 C T 10: 127,425,423 (GRCm39) probably null Het
Mast4 T C 13: 102,872,148 (GRCm39) M2215V probably benign Het
Mfap5 T C 6: 122,502,945 (GRCm39) Y52H probably damaging Het
Mrps31 A G 8: 22,904,991 (GRCm39) K127E possibly damaging Het
Mto1 C T 9: 78,368,311 (GRCm39) T485M probably damaging Het
Mybbp1a G A 11: 72,333,257 (GRCm39) C107Y probably damaging Het
Nedd4 G A 9: 72,638,132 (GRCm39) probably benign Het
Notch1 T A 2: 26,352,540 (GRCm39) probably benign Het
Nubp1 T C 16: 10,238,050 (GRCm39) probably benign Het
Pcdhb1 G A 18: 37,399,726 (GRCm39) R559H possibly damaging Het
Pdcd11 G A 19: 47,117,702 (GRCm39) V1684I probably benign Het
Pggt1b G T 18: 46,382,007 (GRCm39) N258K probably benign Het
Pou6f1 C T 15: 100,484,001 (GRCm39) V166M possibly damaging Het
Pprc1 A G 19: 46,052,111 (GRCm39) D546G possibly damaging Het
Psapl1 T C 5: 36,361,651 (GRCm39) V81A probably benign Het
Rin2 T A 2: 145,686,863 (GRCm39) probably benign Het
Rpf1 A G 3: 146,212,299 (GRCm39) F347S probably damaging Het
Rrp12 A T 19: 41,859,247 (GRCm39) probably null Het
Ryr1 A T 7: 28,771,349 (GRCm39) L2557Q probably null Het
Slc1a7 T C 4: 107,867,497 (GRCm39) probably benign Het
Slc35e2 T A 4: 155,696,171 (GRCm39) M186K possibly damaging Het
Slc49a4 T C 16: 35,550,676 (GRCm39) T308A probably benign Het
Snx6 G T 12: 54,817,549 (GRCm39) S116* probably null Het
Sptan1 T C 2: 29,884,379 (GRCm39) probably null Het
Sucla2 T A 14: 73,830,109 (GRCm39) M382K probably damaging Het
Susd5 T C 9: 113,886,659 (GRCm39) L16P possibly damaging Het
Tmem260 G A 14: 48,724,258 (GRCm39) A369T possibly damaging Het
Tmprss6 A G 15: 78,336,722 (GRCm39) Y393H probably damaging Het
Tnrc6c A T 11: 117,613,345 (GRCm39) Q501L probably damaging Het
Trim17 A G 11: 58,856,369 (GRCm39) Y142C probably damaging Het
Trim65 T C 11: 116,019,108 (GRCm39) R144G probably damaging Het
Trpm1 A G 7: 63,873,547 (GRCm39) T601A probably benign Het
Ttn A T 2: 76,564,688 (GRCm39) V28483E probably damaging Het
Ube2l3 T C 16: 17,019,340 (GRCm39) probably null Het
Ube2l3 G T 16: 17,019,336 (GRCm39) probably benign Het
Yme1l1 T C 2: 23,085,318 (GRCm39) probably benign Het
Zfat A G 15: 68,051,806 (GRCm39) S663P probably benign Het
Zfp647 G A 15: 76,796,285 (GRCm39) P125L probably damaging Het
Other mutations in Nek2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00509:Nek2 APN 1 191,559,490 (GRCm39) splice site probably benign
IGL01753:Nek2 APN 1 191,557,598 (GRCm39) nonsense probably null
IGL02086:Nek2 APN 1 191,563,401 (GRCm39) missense probably benign 0.03
IGL02164:Nek2 APN 1 191,559,416 (GRCm39) missense probably benign 0.01
IGL02550:Nek2 APN 1 191,554,371 (GRCm39) missense probably damaging 1.00
R0398:Nek2 UTSW 1 191,559,473 (GRCm39) missense probably benign
R0610:Nek2 UTSW 1 191,554,627 (GRCm39) missense probably damaging 1.00
R0629:Nek2 UTSW 1 191,563,429 (GRCm39) missense probably benign 0.14
R0646:Nek2 UTSW 1 191,554,331 (GRCm39) missense probably damaging 1.00
R0976:Nek2 UTSW 1 191,559,349 (GRCm39) missense probably benign 0.10
R2054:Nek2 UTSW 1 191,553,764 (GRCm39) missense possibly damaging 0.79
R2112:Nek2 UTSW 1 191,559,320 (GRCm39) missense probably benign 0.08
R3873:Nek2 UTSW 1 191,559,320 (GRCm39) missense probably benign 0.08
R4461:Nek2 UTSW 1 191,554,827 (GRCm39) missense probably damaging 1.00
R6807:Nek2 UTSW 1 191,554,729 (GRCm39) missense probably damaging 0.98
R8032:Nek2 UTSW 1 191,558,457 (GRCm39) missense probably damaging 0.96
R8692:Nek2 UTSW 1 191,554,745 (GRCm39) missense probably benign 0.00
R9709:Nek2 UTSW 1 191,563,289 (GRCm39) missense possibly damaging 0.74
R9780:Nek2 UTSW 1 191,554,738 (GRCm39) missense probably damaging 1.00
Z1176:Nek2 UTSW 1 191,559,351 (GRCm39) missense probably benign 0.05
Predicted Primers PCR Primer
(F):5'- ATGGCCAGGCTGCAGTAGATAG -3'
(R):5'- ATCCACCGCTTTTGGTATGC -3'

Sequencing Primer
(F):5'- ATAGGTTTATGGTCAGAGCTCCTTAC -3'
(R):5'- GAAATTGCCATTCCTATCAGGTC -3'
Posted On 2017-03-31