Incidental Mutation 'R5950:Lnx2'
ID 472379
Institutional Source Beutler Lab
Gene Symbol Lnx2
Ensembl Gene ENSMUSG00000016520
Gene Name ligand of numb-protein X 2
Synonyms
MMRRC Submission 044140-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.079) question?
Stock # R5950 (G1)
Quality Score 225
Status Validated
Chromosome 5
Chromosomal Location 146953465-147013385 bp(-) (GRCm39)
Type of Mutation critical splice donor site (2 bp from exon)
DNA Base Change (assembly) A to G at 146961160 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000016664 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000016664] [ENSMUST00000016664]
AlphaFold Q91XL2
Predicted Effect probably null
Transcript: ENSMUST00000016664
SMART Domains Protein: ENSMUSP00000016664
Gene: ENSMUSG00000016520

DomainStartEndE-ValueType
RING 51 88 2.06e-6 SMART
low complexity region 103 114 N/A INTRINSIC
PDZ 242 317 2.25e-17 SMART
PDZ 348 421 2.97e-17 SMART
PDZ 474 553 7.37e-13 SMART
PDZ 606 683 1.27e-16 SMART
Predicted Effect probably null
Transcript: ENSMUST00000016664
SMART Domains Protein: ENSMUSP00000016664
Gene: ENSMUSG00000016520

DomainStartEndE-ValueType
RING 51 88 2.06e-6 SMART
low complexity region 103 114 N/A INTRINSIC
PDZ 242 317 2.25e-17 SMART
PDZ 348 421 2.97e-17 SMART
PDZ 474 553 7.37e-13 SMART
PDZ 606 683 1.27e-16 SMART
Meta Mutation Damage Score 0.9502 question?
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 97.9%
  • 20x: 93.6%
Validation Efficiency 93% (75/81)
Allele List at MGI
Other mutations in this stock
Total: 68 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca15 G A 7: 119,981,879 (GRCm39) G1065R probably damaging Het
Acox2 A T 14: 8,255,793 (GRCm38) Y113N probably benign Het
Arid4b T A 13: 14,365,849 (GRCm39) probably benign Het
Atf6 C T 1: 170,662,448 (GRCm39) G271R probably damaging Het
Bnip5 T A 17: 29,124,729 (GRCm39) Q256L possibly damaging Het
Cct8l1 C A 5: 25,722,741 (GRCm39) F485L probably benign Het
Cdk5r2 A G 1: 74,894,561 (GRCm39) E102G probably damaging Het
Celsr1 A T 15: 85,916,701 (GRCm39) V424E probably damaging Het
Ces1h T C 8: 94,089,587 (GRCm39) T271A probably benign Het
Cfap44 T C 16: 44,300,210 (GRCm39) I1738T probably damaging Het
Cntnap3 G A 13: 64,935,583 (GRCm39) L427F probably damaging Het
Crybg3 T C 16: 59,313,934 (GRCm39) probably benign Het
Dis3l2 A G 1: 86,948,830 (GRCm39) D589G probably damaging Het
Dlg1 A G 16: 31,484,401 (GRCm39) R10G probably damaging Het
Dnajc1 A C 2: 18,311,752 (GRCm39) probably benign Het
Dpy19l2 T A 9: 24,492,430 (GRCm39) T723S probably benign Het
Dsg3 A T 18: 20,671,586 (GRCm39) N764Y probably damaging Het
Dst G T 1: 34,301,141 (GRCm39) R3654L probably damaging Het
Dynlt5 T G 4: 102,861,447 (GRCm39) L147R probably damaging Het
Evl C T 12: 108,641,812 (GRCm39) T198I probably benign Het
Hectd2 A G 19: 36,574,639 (GRCm39) probably benign Het
Hsp90b1 A G 10: 86,537,609 (GRCm39) V232A possibly damaging Het
Igsf5 T C 16: 96,174,072 (GRCm39) V34A probably benign Het
Ikzf2 A T 1: 69,722,403 (GRCm39) N41K probably damaging Het
Kif6 G T 17: 50,022,116 (GRCm39) A339S probably damaging Het
Klhl1 T A 14: 96,477,790 (GRCm39) D426V probably damaging Het
Knop1 A C 7: 118,452,557 (GRCm39) V54G probably damaging Het
Lama4 T A 10: 38,906,444 (GRCm39) V270D probably benign Het
Lrp5 A T 19: 3,652,333 (GRCm39) V1179E probably benign Het
Lrpprc T G 17: 85,047,598 (GRCm39) D878A possibly damaging Het
Lrrc14 A T 15: 76,599,510 (GRCm39) probably benign Het
Ltbp1 A T 17: 75,580,865 (GRCm39) D660V probably damaging Het
Macf1 C G 4: 123,333,229 (GRCm39) probably null Het
Map3k21 C A 8: 126,668,499 (GRCm39) T695K possibly damaging Het
Mcm3ap T A 10: 76,324,253 (GRCm39) D895E possibly damaging Het
Mink1 T A 11: 70,500,412 (GRCm39) D779E possibly damaging Het
Mkrn3 T C 7: 62,069,467 (GRCm39) E108G probably damaging Het
Mtcl3 T C 10: 29,019,644 (GRCm39) probably benign Het
Nars1 A G 18: 64,643,556 (GRCm39) V141A possibly damaging Het
Or8g34 T C 9: 39,373,633 (GRCm39) V299A probably benign Het
Pard3b T A 1: 62,255,690 (GRCm39) Y572N probably benign Het
Pcnx3 A C 19: 5,717,186 (GRCm39) M1599R possibly damaging Het
Pitx2 A G 3: 129,012,169 (GRCm39) S180G probably damaging Het
Pkd2l1 A C 19: 44,140,529 (GRCm39) V608G probably benign Het
Pkhd1l1 A G 15: 44,396,361 (GRCm39) D1961G probably benign Het
Pxylp1 T C 9: 96,721,179 (GRCm39) T109A probably damaging Het
Rai1 T A 11: 60,078,419 (GRCm39) C828S probably damaging Het
Ralgapa1 T A 12: 55,785,050 (GRCm39) T737S possibly damaging Het
Scn11a A G 9: 119,640,190 (GRCm39) V235A probably damaging Het
Sfxn1 A T 13: 54,245,306 (GRCm39) T134S probably benign Het
Skint1 A G 4: 111,876,532 (GRCm39) Y151C probably benign Het
Slc11a1 G T 1: 74,416,335 (GRCm39) W54L probably benign Het
Slc49a3 A T 5: 108,593,351 (GRCm39) H162Q probably damaging Het
Synpo2l T A 14: 20,716,003 (GRCm39) Q191L probably benign Het
Tank A G 2: 61,483,913 (GRCm39) probably benign Het
Terb1 A T 8: 105,215,117 (GRCm39) probably null Het
Trdc T C 14: 54,381,768 (GRCm39) probably benign Het
Tsen34 A G 7: 3,697,787 (GRCm39) I63V probably null Het
Ust T C 10: 8,123,865 (GRCm39) H257R probably benign Het
Vmn2r6 T C 3: 64,472,652 (GRCm39) Q23R probably benign Het
Wdr93 A T 7: 79,423,179 (GRCm39) H481L probably damaging Het
Xirp2 A G 2: 67,341,664 (GRCm39) T1302A possibly damaging Het
Zc3h6 C A 2: 128,839,710 (GRCm39) Y174* probably null Het
Zcchc7 T G 4: 44,931,244 (GRCm39) D144E possibly damaging Het
Zfp472 T A 17: 33,196,481 (GRCm39) H185Q possibly damaging Het
Zfp523 C A 17: 28,421,532 (GRCm39) P66H probably benign Het
Zfp712 A T 13: 67,192,881 (GRCm39) L57Q probably damaging Het
Zik1 G A 7: 10,224,498 (GRCm39) Q200* probably null Het
Other mutations in Lnx2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02593:Lnx2 APN 5 146,969,825 (GRCm39) missense possibly damaging 0.81
IGL02657:Lnx2 APN 5 146,964,984 (GRCm39) missense probably damaging 1.00
IGL02820:Lnx2 APN 5 146,978,877 (GRCm39) missense probably damaging 0.98
R0051:Lnx2 UTSW 5 146,966,163 (GRCm39) missense probably damaging 0.96
R0389:Lnx2 UTSW 5 146,955,850 (GRCm39) missense possibly damaging 0.51
R0482:Lnx2 UTSW 5 146,955,771 (GRCm39) missense probably damaging 0.99
R1601:Lnx2 UTSW 5 146,970,329 (GRCm39) missense probably damaging 0.99
R1604:Lnx2 UTSW 5 146,966,135 (GRCm39) missense probably benign 0.02
R1647:Lnx2 UTSW 5 146,964,152 (GRCm39) missense probably benign 0.04
R3001:Lnx2 UTSW 5 146,955,825 (GRCm39) missense probably benign 0.00
R3002:Lnx2 UTSW 5 146,955,825 (GRCm39) missense probably benign 0.00
R4734:Lnx2 UTSW 5 146,965,947 (GRCm39) missense probably damaging 1.00
R4960:Lnx2 UTSW 5 146,955,850 (GRCm39) missense probably benign 0.09
R5387:Lnx2 UTSW 5 146,964,964 (GRCm39) missense probably benign 0.00
R5689:Lnx2 UTSW 5 146,965,961 (GRCm39) missense probably damaging 1.00
R6161:Lnx2 UTSW 5 146,978,836 (GRCm39) splice site probably null
R6623:Lnx2 UTSW 5 146,961,297 (GRCm39) missense probably damaging 1.00
R7086:Lnx2 UTSW 5 146,956,988 (GRCm39) splice site probably null
R7320:Lnx2 UTSW 5 146,956,943 (GRCm39) missense possibly damaging 0.71
R7701:Lnx2 UTSW 5 146,961,333 (GRCm39) missense probably damaging 1.00
R7887:Lnx2 UTSW 5 146,955,853 (GRCm39) missense probably damaging 1.00
R8153:Lnx2 UTSW 5 146,964,906 (GRCm39) missense probably benign
R8267:Lnx2 UTSW 5 146,965,901 (GRCm39) missense probably damaging 1.00
R8298:Lnx2 UTSW 5 146,961,327 (GRCm39) missense probably benign 0.05
R8384:Lnx2 UTSW 5 146,966,138 (GRCm39) missense probably benign 0.01
R8446:Lnx2 UTSW 5 146,970,169 (GRCm39) missense probably benign
R8971:Lnx2 UTSW 5 146,970,236 (GRCm39) missense probably benign
R9378:Lnx2 UTSW 5 146,961,180 (GRCm39) missense probably benign 0.16
R9468:Lnx2 UTSW 5 146,979,289 (GRCm39) start gained probably benign
R9711:Lnx2 UTSW 5 146,961,376 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- CCTCCTTAAAGGGAATTGTCTTCG -3'
(R):5'- CGTGTTGCTGAACATCAACG -3'

Sequencing Primer
(F):5'- GGGAATTGTCTTCGTTTTACAAGAAG -3'
(R):5'- GTTGCTGAACATCAACGGCATTG -3'
Posted On 2017-03-31