Incidental Mutation 'R5240:Znhit1'
ID 472453
Institutional Source Beutler Lab
Gene Symbol Znhit1
Ensembl Gene ENSMUSG00000059518
Gene Name zinc finger, HIT domain containing 1
Synonyms 2700001K05Rik
MMRRC Submission 042811-MU
Accession Numbers
Essential gene? Possibly essential (E-score: 0.698) question?
Stock # R5240 (G1)
Quality Score 127
Status Validated
Chromosome 5
Chromosomal Location 137011048-137016813 bp(-) (GRCm39)
Type of Mutation splice site (541 bp from exon)
DNA Base Change (assembly) T to A at 137011235 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000120331 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000004968] [ENSMUST00000034953] [ENSMUST00000085941] [ENSMUST00000111090] [ENSMUST00000111091] [ENSMUST00000156963] [ENSMUST00000137272]
AlphaFold Q8R331
Predicted Effect probably benign
Transcript: ENSMUST00000004968
SMART Domains Protein: ENSMUSP00000004968
Gene: ENSMUSG00000004846

DomainStartEndE-ValueType
signal peptide 1 26 N/A INTRINSIC
low complexity region 312 324 N/A INTRINSIC
Blast:P4Hc 456 502 2e-8 BLAST
P4Hc 567 740 1.43e-23 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000034953
SMART Domains Protein: ENSMUSP00000034953
Gene: ENSMUSG00000059518

DomainStartEndE-ValueType
low complexity region 14 26 N/A INTRINSIC
low complexity region 58 73 N/A INTRINSIC
Pfam:zf-HIT 112 141 6.3e-13 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000085941
SMART Domains Protein: ENSMUSP00000083103
Gene: ENSMUSG00000059518

DomainStartEndE-ValueType
low complexity region 15 27 N/A INTRINSIC
low complexity region 59 74 N/A INTRINSIC
Pfam:zf-HIT 113 142 3e-13 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000111090
SMART Domains Protein: ENSMUSP00000106719
Gene: ENSMUSG00000059518

DomainStartEndE-ValueType
low complexity region 14 26 N/A INTRINSIC
low complexity region 58 73 N/A INTRINSIC
Pfam:zf-HIT 112 141 2.2e-14 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000111091
SMART Domains Protein: ENSMUSP00000106720
Gene: ENSMUSG00000059518

DomainStartEndE-ValueType
low complexity region 19 31 N/A INTRINSIC
low complexity region 63 78 N/A INTRINSIC
Pfam:zf-HIT 117 146 2.1e-13 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000129896
Predicted Effect probably benign
Transcript: ENSMUST00000156963
SMART Domains Protein: ENSMUSP00000115929
Gene: ENSMUSG00000059518

DomainStartEndE-ValueType
low complexity region 14 26 N/A INTRINSIC
low complexity region 58 73 N/A INTRINSIC
Pfam:zf-HIT 112 141 6.7e-13 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000137272
SMART Domains Protein: ENSMUSP00000120331
Gene: ENSMUSG00000059518

DomainStartEndE-ValueType
low complexity region 19 31 N/A INTRINSIC
Meta Mutation Damage Score 0.9755 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.1%
  • 20x: 95.1%
Validation Efficiency 100% (69/69)
Allele List at MGI
Other mutations in this stock
Total: 64 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aadacl2fm2 A C 3: 59,659,449 (GRCm39) T301P probably damaging Het
Cdc42bpg T G 19: 6,365,929 (GRCm39) L786R probably damaging Het
Cfap73 C T 5: 120,767,772 (GRCm39) V260I probably damaging Het
Chchd10 A T 10: 75,773,283 (GRCm39) N131I probably damaging Het
Chn2 T C 6: 54,197,680 (GRCm39) V190A probably benign Het
Clec2l C T 6: 38,650,387 (GRCm39) T64I probably damaging Het
Cpeb3 T A 19: 37,151,915 (GRCm39) T154S probably damaging Het
D130043K22Rik A G 13: 25,061,960 (GRCm39) E643G probably damaging Het
Ddx31 A G 2: 28,736,042 (GRCm39) M127V probably benign Het
Dennd1b A G 1: 138,990,615 (GRCm39) Y193C probably damaging Het
Dgke T A 11: 88,941,511 (GRCm39) D288V probably damaging Het
Dst T A 1: 34,247,639 (GRCm39) L1683* probably null Het
Dusp29 G A 14: 21,727,091 (GRCm39) R186W probably benign Het
E130116L18Rik G T 5: 25,428,018 (GRCm39) probably benign Het
Eif2b5 G A 16: 20,320,148 (GRCm39) V115I possibly damaging Het
Fchsd1 C T 18: 38,092,926 (GRCm39) probably benign Het
Fgfr3 A T 5: 33,887,382 (GRCm39) T234S probably damaging Het
Gipc2 A T 3: 151,808,299 (GRCm39) D251E possibly damaging Het
Gm11787 A C 4: 3,511,810 (GRCm39) noncoding transcript Het
Haus6 A G 4: 86,501,415 (GRCm39) Y819H possibly damaging Het
Homez G A 14: 55,095,531 (GRCm39) A59V probably damaging Het
Iffo1 T C 6: 125,129,423 (GRCm39) V363A probably benign Het
Ifit2 T A 19: 34,551,796 (GRCm39) D445E probably benign Het
Ipo9 A C 1: 135,317,344 (GRCm39) probably benign Het
Kcnv1 C T 15: 44,976,640 (GRCm39) G216R probably damaging Het
Kdm6b A C 11: 69,292,730 (GRCm39) probably benign Het
Mplkip T C 13: 17,870,304 (GRCm39) S79P probably damaging Het
Nae1 T C 8: 105,249,776 (GRCm39) probably benign Het
Nfe2l2 A T 2: 75,506,353 (GRCm39) N582K possibly damaging Het
Nsmce4a G A 7: 130,138,754 (GRCm39) R297C probably damaging Het
Or1e1f T C 11: 73,855,632 (GRCm39) L66P probably damaging Het
Or3a1d T A 11: 74,238,068 (GRCm39) D114V probably damaging Het
Or5p70 A T 7: 107,994,909 (GRCm39) D194V probably damaging Het
Osbp T A 19: 11,955,654 (GRCm39) F357I probably damaging Het
Pcdhb4 A G 18: 37,442,979 (GRCm39) D763G possibly damaging Het
Pcdhgb2 A C 18: 37,824,103 (GRCm39) I365L possibly damaging Het
Pde6g A G 11: 120,338,912 (GRCm39) probably benign Het
Pigo C A 4: 43,020,675 (GRCm39) V756L possibly damaging Het
Pkhd1 G T 1: 20,345,865 (GRCm39) T2721K probably benign Het
Pls1 A T 9: 95,658,675 (GRCm39) probably null Het
Prim2 A G 1: 33,519,397 (GRCm39) probably benign Het
Prkd2 T A 7: 16,589,711 (GRCm39) I471N probably benign Het
Prrc2b C T 2: 32,096,408 (GRCm39) T593I probably benign Het
Ptch2 C A 4: 116,963,335 (GRCm39) probably benign Het
Pth A T 7: 112,985,051 (GRCm39) D107E probably damaging Het
Pycr2 A C 1: 180,735,188 (GRCm39) Q315P probably benign Het
Rbpj A T 5: 53,806,782 (GRCm39) Y209F probably damaging Het
Ripk4 C A 16: 97,544,967 (GRCm39) R560L probably damaging Het
Sdr42e1 T C 8: 118,390,021 (GRCm39) R207G probably benign Het
Sipa1l1 A G 12: 82,388,362 (GRCm39) Y196C possibly damaging Het
Smarcc2 T C 10: 128,316,875 (GRCm39) probably null Het
Stom T A 2: 35,226,889 (GRCm39) I15F probably benign Het
Sugp2 G T 8: 70,695,925 (GRCm39) L299F probably benign Het
Tbrg4 A T 11: 6,567,516 (GRCm39) probably null Het
Tkt G T 14: 30,287,635 (GRCm39) G210C probably damaging Het
Tmem163 G A 1: 127,419,289 (GRCm39) probably benign Het
Trip12 A G 1: 84,771,854 (GRCm39) I98T probably benign Het
Unc5b A G 10: 60,610,419 (GRCm39) I466T probably damaging Het
Unc79 T A 12: 103,037,010 (GRCm39) F599L probably damaging Het
Vav1 G A 17: 57,604,122 (GRCm39) E151K probably damaging Het
Vcan T G 13: 89,840,651 (GRCm39) D1631A probably benign Het
Vmn2r4 A C 3: 64,314,358 (GRCm39) S208A possibly damaging Het
Zfp619 A G 7: 39,186,642 (GRCm39) T891A possibly damaging Het
Zfp672 A G 11: 58,220,527 (GRCm39) probably benign Het
Other mutations in Znhit1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00577:Znhit1 APN 5 137,011,437 (GRCm39) nonsense probably null
IGL02401:Znhit1 APN 5 137,011,513 (GRCm39) missense probably damaging 1.00
R0032:Znhit1 UTSW 5 137,013,901 (GRCm39) missense possibly damaging 0.49
R5107:Znhit1 UTSW 5 137,015,682 (GRCm39) missense probably benign
R5710:Znhit1 UTSW 5 137,011,456 (GRCm39) missense probably damaging 1.00
R6148:Znhit1 UTSW 5 137,011,487 (GRCm39) missense probably benign 0.00
R6444:Znhit1 UTSW 5 137,011,254 (GRCm39) missense probably benign 0.01
R6683:Znhit1 UTSW 5 137,011,487 (GRCm39) missense probably benign 0.00
R8985:Znhit1 UTSW 5 137,011,408 (GRCm39) missense probably damaging 1.00
R9566:Znhit1 UTSW 5 137,015,785 (GRCm39) intron probably benign
X0028:Znhit1 UTSW 5 137,013,854 (GRCm39) missense probably damaging 0.96
Predicted Primers PCR Primer
(F):5'- AGAATGAGCAGGCAGGCTTC -3'
(R):5'- CCGTATACCTGTGTGAGCTG -3'

Sequencing Primer
(F):5'- AGGCAGGCTTCCTTTCACCAG -3'
(R):5'- CTGTGGTGCCCGGTACTG -3'
Posted On 2017-04-03