Mutagenetix > Incidental Mutation

Incidental Mutation 'R0508:Ccdc121rt3'

47718

Institutional Source

Beutler Lab

Gene Symbol

Ccdc121rt3

Ensembl Gene

ENSMUSG00000051503

Gene Name

coiled-coil domain containing 121, retrogene 3

Synonyms

Gm6583

MMRRC Submission

038703-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.069) question?

Stock #

R0508 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

112501667-112503899 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 112502685 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Glutamic Acid at position 340 (K340E)

Ref Sequence

ENSEMBL: ENSMUSP00000049839 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000035279] [ENSMUST00000051117] [ENSMUST00000112359]

AlphaFold

E9Q8Z1

Predicted Effect

probably benign
Transcript: ENSMUST00000035279

SMART Domains

Protein: ENSMUSP00000047920
Gene: ENSMUSG00000042328

Domain	Start	End	E-Value	Type
low complexity region	171	180	N/A	INTRINSIC
low complexity region	467	486	N/A	INTRINSIC
low complexity region	514	529	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000051117
AA Change: K340E

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000049839
Gene: ENSMUSG00000051503
AA Change: K340E

Domain	Start	End	E-Value	Type
low complexity region	71	83	N/A	INTRINSIC
coiled coil region	159	193	N/A	INTRINSIC
Pfam:DUF4515	199	404	1.2e-79	PFAM
low complexity region	406	422	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000112359

SMART Domains

Protein: ENSMUSP00000107978
Gene: ENSMUSG00000042328

Domain	Start	End	E-Value	Type
low complexity region	171	180	N/A	INTRINSIC
low complexity region	467	486	N/A	INTRINSIC
low complexity region	514	529	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133708

Meta Mutation Damage Score

0.2108

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.1%
20x: 92.0%

Validation Efficiency

99% (67/68)

Allele List at MGI

Other mutations in this stock

Total: 68 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2700049A03Rik	T	C	12: 71,211,162 (GRCm39)	L632P	probably damaging	Het
4833439L19Rik	A	G	13: 54,700,863 (GRCm39)		probably null	Het
Abca4	T	C	3: 121,917,200 (GRCm39)		probably benign	Het
Adamts10	G	T	17: 33,762,692 (GRCm39)	G557V	probably damaging	Het
Adgrg6	T	C	10: 14,326,360 (GRCm39)	H424R	probably benign	Het
Ano4	T	C	10: 88,816,839 (GRCm39)	Q623R	probably damaging	Het
Ap1g1	T	A	8: 110,564,364 (GRCm39)		probably benign	Het
Ap3b1	T	C	13: 94,702,222 (GRCm39)	S1092P	unknown	Het
Arhgap32	A	T	9: 32,101,364 (GRCm39)		probably benign	Het
Arhgap40	A	T	2: 158,388,670 (GRCm39)	S535C	probably damaging	Het
Atp9a	T	C	2: 168,491,446 (GRCm39)		probably null	Het
Bicral	A	T	17: 47,136,327 (GRCm39)	H294Q	possibly damaging	Het
Cdhr5	T	A	7: 140,852,812 (GRCm39)	H58L	probably benign	Het
Cenpt	T	C	8: 106,576,147 (GRCm39)	E100G	possibly damaging	Het
Cep97	A	G	16: 55,750,969 (GRCm39)	S16P	probably benign	Het
Clec2i	T	A	6: 128,870,663 (GRCm39)	V67D	probably damaging	Het
Col22a1	A	G	15: 71,805,262 (GRCm39)	L146P	unknown	Het
Coq6	G	T	12: 84,414,913 (GRCm39)		probably benign	Het
Cyp1a1	A	G	9: 57,607,588 (GRCm39)	Q72R	probably benign	Het
Ep400	A	G	5: 110,887,374 (GRCm39)	S570P	probably benign	Het
Erbin	T	C	13: 103,970,535 (GRCm39)	N1027S	probably damaging	Het
Exog	T	A	9: 119,277,444 (GRCm39)		probably benign	Het
Fahd1	A	C	17: 25,068,975 (GRCm39)	V34G	probably benign	Het
Fetub	C	T	16: 22,748,045 (GRCm39)	R74W	probably benign	Het
Fhip2a	T	A	19: 57,367,174 (GRCm39)	L239Q	probably benign	Het
Frmpd1	G	A	4: 45,284,938 (GRCm39)	G1253D	unknown	Het
Galnt12	A	G	4: 47,104,255 (GRCm39)	D171G	probably damaging	Het
Gm973	G	T	1: 59,621,649 (GRCm39)		probably benign	Het
Hdlbp	C	A	1: 93,342,533 (GRCm39)		probably null	Het
Il1rl1	T	A	1: 40,490,877 (GRCm39)	I386N	possibly damaging	Het
Itgav	T	C	2: 83,623,002 (GRCm39)		probably benign	Het
Magoh	A	C	4: 107,742,195 (GRCm39)	K114Q	possibly damaging	Het
Mdfic2	T	C	6: 98,215,005 (GRCm39)		probably benign	Het
Mki67	A	T	7: 135,302,075 (GRCm39)	D986E	probably benign	Het
Muc4	G	A	16: 32,570,131 (GRCm39)	S397N	possibly damaging	Het
Nckap5	T	C	1: 125,909,121 (GRCm39)		probably null	Het
Neu1	A	G	17: 35,151,760 (GRCm39)	I185V	probably benign	Het
Nkiras1	T	A	14: 18,278,524 (GRCm38)	D79E	probably damaging	Het
Nkx3-1	A	G	14: 69,428,350 (GRCm39)	E66G	probably benign	Het
Or51a5	A	T	7: 102,771,193 (GRCm39)	I262N	possibly damaging	Het
Osbpl11	T	A	16: 33,016,465 (GRCm39)	N73K	probably benign	Het
Otulin	C	T	15: 27,608,944 (GRCm39)	V2I	possibly damaging	Het
Pdss2	CGGAG	CG	10: 43,097,927 (GRCm39)		probably benign	Het
Pld2	T	C	11: 70,443,368 (GRCm39)	M421T	probably damaging	Het
Rgs11	A	G	17: 26,426,443 (GRCm39)		probably benign	Het
Rrad	A	T	8: 105,356,500 (GRCm39)	D133E	possibly damaging	Het
Scaf11	A	G	15: 96,318,368 (GRCm39)	S399P	probably damaging	Het
Sccpdh	A	G	1: 179,508,080 (GRCm39)		probably null	Het
Scn2a	A	G	2: 65,548,186 (GRCm39)	E1126G	probably damaging	Het
Selenop	T	G	15: 3,305,202 (GRCm39)	D119E	probably benign	Het
Serpinb3c	T	A	1: 107,204,651 (GRCm39)	S32C	probably damaging	Het
Serpine1	C	A	5: 137,093,770 (GRCm39)	K315N	probably benign	Het
Slc27a1	T	C	8: 72,032,872 (GRCm39)		probably benign	Het
Slc4a8	G	A	15: 100,686,973 (GRCm39)	R259Q	probably benign	Het
Smtnl2	C	T	11: 72,293,962 (GRCm39)	R198Q	probably damaging	Het
Spta1	A	C	1: 174,052,023 (GRCm39)	Y1819S	probably damaging	Het
Stard3	T	A	11: 98,263,140 (GRCm39)	I65N	probably damaging	Het
Tfrc	T	C	16: 32,448,997 (GRCm39)	L712P	probably damaging	Het
Tmem201	G	A	4: 149,816,343 (GRCm39)	R62C	probably damaging	Het
Trim5	A	T	7: 103,914,811 (GRCm39)	F410L	probably null	Het
Txndc2	T	A	17: 65,944,948 (GRCm39)	I410F	probably benign	Het
Urb1	C	T	16: 90,580,150 (GRCm39)		probably benign	Het
Vmn1r34	A	T	6: 66,614,392 (GRCm39)	F115L	probably benign	Het
Vnn1	T	C	10: 23,770,910 (GRCm39)	V46A	probably benign	Het
Xrn1	T	A	9: 95,933,789 (GRCm39)	S1615R	probably benign	Het
Zfand4	T	A	6: 116,262,828 (GRCm39)	C118S	probably damaging	Het
Zfp952	G	A	17: 33,221,979 (GRCm39)	E115K	possibly damaging	Het
Zfpm1	T	C	8: 123,061,872 (GRCm39)	F368L	probably damaging	Het

Other mutations in Ccdc121rt3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00904:Ccdc121rt3	APN	5	112,502,994 (GRCm39)	nonsense	probably null
IGL01464:Ccdc121rt3	APN	5	112,503,399 (GRCm39)	missense	possibly damaging	0.93
IGL01615:Ccdc121rt3	APN	5	112,503,696 (GRCm39)	missense	possibly damaging	0.93
R1466:Ccdc121rt3	UTSW	5	112,502,630 (GRCm39)	missense	probably benign	0.00
R1466:Ccdc121rt3	UTSW	5	112,502,630 (GRCm39)	missense	probably benign	0.00
R1473:Ccdc121rt3	UTSW	5	112,502,415 (GRCm39)	missense	probably benign	0.45
R1474:Ccdc121rt3	UTSW	5	112,503,642 (GRCm39)	missense	probably benign
R1584:Ccdc121rt3	UTSW	5	112,502,630 (GRCm39)	missense	probably benign	0.00
R2032:Ccdc121rt3	UTSW	5	112,502,978 (GRCm39)	missense	possibly damaging	0.95
R2422:Ccdc121rt3	UTSW	5	112,502,984 (GRCm39)	missense	probably damaging	1.00
R4795:Ccdc121rt3	UTSW	5	112,503,165 (GRCm39)	missense	possibly damaging	0.65
R4796:Ccdc121rt3	UTSW	5	112,503,165 (GRCm39)	missense	possibly damaging	0.65
R5306:Ccdc121rt3	UTSW	5	112,502,910 (GRCm39)	missense	probably benign	0.41
R5997:Ccdc121rt3	UTSW	5	112,502,874 (GRCm39)	missense	possibly damaging	0.71
R6915:Ccdc121rt3	UTSW	5	112,502,523 (GRCm39)	missense	probably damaging	1.00
R7022:Ccdc121rt3	UTSW	5	112,503,395 (GRCm39)	missense	probably benign
R7702:Ccdc121rt3	UTSW	5	112,503,063 (GRCm39)	missense	probably benign	0.27
R7721:Ccdc121rt3	UTSW	5	112,503,383 (GRCm39)	missense	probably benign
R8037:Ccdc121rt3	UTSW	5	112,502,882 (GRCm39)	missense	probably benign	0.23
R8114:Ccdc121rt3	UTSW	5	112,503,563 (GRCm39)	missense	probably benign
R8380:Ccdc121rt3	UTSW	5	112,503,191 (GRCm39)	missense	probably benign	0.01
R8914:Ccdc121rt3	UTSW	5	112,503,087 (GRCm39)	missense	probably damaging	0.98
R9067:Ccdc121rt3	UTSW	5	112,502,706 (GRCm39)	missense	possibly damaging	0.90
R9140:Ccdc121rt3	UTSW	5	112,502,723 (GRCm39)	missense	probably damaging	1.00
R9322:Ccdc121rt3	UTSW	5	112,503,272 (GRCm39)	missense	probably damaging	0.99
R9690:Ccdc121rt3	UTSW	5	112,503,300 (GRCm39)	missense	probably benign
R9786:Ccdc121rt3	UTSW	5	112,502,939 (GRCm39)	missense	probably benign
Z1177:Ccdc121rt3	UTSW	5	112,502,784 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- TGGCTTTTGGCCTGGCACTTAATAG -3'
(R):5'- ACATCCAGCAGTGTGAGGAGATCG -3'

Sequencing Primer
(F):5'- TGGCACTTAATAGACGGCTC -3'
(R):5'- AAGCTTGAGGCCAGCTTG -3'

Posted On

2013-06-12