Incidental Mutation 'R2912:Garin4'
| ID |
477195 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Garin4
|
| Ensembl Gene |
ENSMUSG00000091017 |
| Gene Name |
golgi associated RAB2 interactor family member 4 |
| Synonyms |
4933417M04Rik, Fam71a |
| MMRRC Submission |
040499-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.065)
|
| Stock # |
R2912 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
1 |
| Chromosomal Location |
190894781-190897014 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 190895425 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Asparagine to Serine
at position 406
(N406S)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000127945
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000171798]
|
| AlphaFold |
B7XG49 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000171798
AA Change: N406S
PolyPhen 2
Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
|
| SMART Domains |
Protein: ENSMUSP00000127945
Gene: ENSMUSG00000091017
AA Change: N406S
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:DUF3699
|
120 |
193 |
3.6e-31 |
PFAM |
|
low complexity region
|
214 |
227 |
N/A |
INTRINSIC |
|
low complexity region
|
505 |
513 |
N/A |
INTRINSIC |
|
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.4%
- 20x: 95.4%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that interacts with the Rab2B small GTPase and may be important for integrity of the Golgi body. A knockdown of this gene induces fragmentation of the Golgi, similar to the effect seen with a knockdown of the Rab2B small GTPase. The encoded protein has an N-terminal Rab-binding domain specific for Rab2B. [provided by RefSeq, Feb 2017]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 43 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Aloxe3 |
A |
T |
11: 69,020,866 (GRCm39) |
K197M |
probably damaging |
Het |
| Asxl2 |
A |
G |
12: 3,524,517 (GRCm39) |
K182E |
probably benign |
Het |
| Birc6 |
A |
G |
17: 74,999,201 (GRCm39) |
D4643G |
probably damaging |
Het |
| Bmpr1b |
T |
C |
3: 141,586,139 (GRCm39) |
D41G |
probably benign |
Het |
| Cd109 |
CATTTATTTATTTATTTATTTATTTATTTATTTAT |
CATTTATTTATTTATTTATTTATTTATTTATTTATTTAT |
9: 78,619,782 (GRCm39) |
|
probably benign |
Het |
| Creb3l1 |
T |
C |
2: 91,817,398 (GRCm39) |
T372A |
possibly damaging |
Het |
| Dbn1 |
A |
G |
13: 55,630,234 (GRCm39) |
F45L |
probably damaging |
Het |
| Dhx29 |
A |
G |
13: 113,072,109 (GRCm39) |
E251G |
probably damaging |
Het |
| Dnajc27 |
C |
T |
12: 4,146,280 (GRCm39) |
S103L |
probably damaging |
Het |
| Dync1li1 |
T |
G |
9: 114,544,743 (GRCm39) |
N348K |
probably benign |
Het |
| Emc1 |
T |
C |
4: 139,092,571 (GRCm39) |
S504P |
possibly damaging |
Het |
| F5 |
A |
G |
1: 164,021,488 (GRCm39) |
D1321G |
probably damaging |
Het |
| Gpr157 |
G |
A |
4: 150,183,222 (GRCm39) |
V131I |
probably benign |
Het |
| Hprt1 |
T |
C |
X: 52,109,016 (GRCm39) |
Y174H |
probably damaging |
Het |
| Kcnq2 |
A |
G |
2: 180,723,567 (GRCm39) |
V603A |
probably damaging |
Het |
| Lama2 |
T |
C |
10: 26,876,799 (GRCm39) |
S2716G |
probably benign |
Het |
| Lax1 |
A |
G |
1: 133,611,791 (GRCm39) |
V48A |
possibly damaging |
Het |
| Macf1 |
T |
A |
4: 123,369,704 (GRCm39) |
I121F |
probably damaging |
Het |
| Med17 |
A |
G |
9: 15,187,210 (GRCm39) |
L188P |
probably damaging |
Het |
| Mfsd5 |
A |
G |
15: 102,189,743 (GRCm39) |
T372A |
probably benign |
Het |
| Mrgprb5 |
T |
C |
7: 47,817,815 (GRCm39) |
S307G |
probably benign |
Het |
| Mroh9 |
T |
C |
1: 162,871,572 (GRCm39) |
Y637C |
probably damaging |
Het |
| Nherf2 |
C |
T |
17: 24,861,215 (GRCm39) |
G71S |
probably damaging |
Het |
| Nktr |
T |
C |
9: 121,578,670 (GRCm39) |
|
probably benign |
Het |
| Nrg1 |
A |
G |
8: 32,308,595 (GRCm39) |
S474P |
probably damaging |
Het |
| Nup210 |
T |
G |
6: 91,003,956 (GRCm39) |
D644A |
probably damaging |
Het |
| Or10ak7 |
A |
G |
4: 118,791,898 (GRCm39) |
I47T |
probably benign |
Het |
| Or4c11 |
A |
T |
2: 88,695,458 (GRCm39) |
N170Y |
probably benign |
Het |
| Or5j3 |
A |
G |
2: 86,128,733 (GRCm39) |
D191G |
probably damaging |
Het |
| Or8g34 |
T |
C |
9: 39,373,512 (GRCm39) |
Y259H |
probably damaging |
Het |
| Panx2 |
A |
G |
15: 88,954,024 (GRCm39) |
I660V |
probably benign |
Het |
| Pramel13 |
T |
C |
4: 144,119,304 (GRCm39) |
E421G |
probably damaging |
Het |
| Prx |
C |
T |
7: 27,215,654 (GRCm39) |
P52S |
probably damaging |
Het |
| Ptprf |
A |
G |
4: 118,106,177 (GRCm39) |
S206P |
probably damaging |
Het |
| Rbm45 |
C |
T |
2: 76,205,798 (GRCm39) |
P217S |
probably benign |
Het |
| Rfx6 |
A |
G |
10: 51,594,226 (GRCm39) |
D382G |
probably damaging |
Het |
| Ric3 |
A |
G |
7: 108,653,660 (GRCm39) |
F144L |
possibly damaging |
Het |
| Snx29 |
C |
T |
16: 11,265,317 (GRCm39) |
R516W |
probably damaging |
Het |
| Trank1 |
T |
C |
9: 111,221,551 (GRCm39) |
S2763P |
probably damaging |
Het |
| Vmn1r42 |
T |
C |
6: 89,821,688 (GRCm39) |
M294V |
probably benign |
Het |
| Zfp467 |
C |
A |
6: 48,416,010 (GRCm39) |
R214L |
possibly damaging |
Het |
| Zfp750 |
C |
A |
11: 121,403,153 (GRCm39) |
A532S |
probably benign |
Het |
| Zscan4d |
G |
A |
7: 10,896,614 (GRCm39) |
P252L |
probably benign |
Het |
|
| Other mutations in Garin4 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01065:Garin4
|
APN |
1 |
190,895,224 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL01541:Garin4
|
APN |
1 |
190,896,606 (GRCm39) |
nonsense |
probably null |
|
|
IGL02364:Garin4
|
APN |
1 |
190,895,713 (GRCm39) |
missense |
probably benign |
0.03 |
|
IGL02573:Garin4
|
APN |
1 |
190,896,067 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02705:Garin4
|
APN |
1 |
190,896,499 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03057:Garin4
|
APN |
1 |
190,895,141 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL03283:Garin4
|
APN |
1 |
190,895,029 (GRCm39) |
missense |
probably benign |
0.08 |
|
R0234:Garin4
|
UTSW |
1 |
190,895,105 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0234:Garin4
|
UTSW |
1 |
190,895,105 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0402:Garin4
|
UTSW |
1 |
190,896,637 (GRCm39) |
missense |
probably benign |
0.03 |
|
R0635:Garin4
|
UTSW |
1 |
190,895,924 (GRCm39) |
missense |
probably benign |
|
|
R0750:Garin4
|
UTSW |
1 |
190,896,682 (GRCm39) |
start gained |
probably benign |
|
|
R1118:Garin4
|
UTSW |
1 |
190,896,682 (GRCm39) |
start gained |
probably benign |
|
|
R1521:Garin4
|
UTSW |
1 |
190,896,219 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1573:Garin4
|
UTSW |
1 |
190,896,682 (GRCm39) |
start gained |
probably benign |
|
|
R1654:Garin4
|
UTSW |
1 |
190,895,678 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1699:Garin4
|
UTSW |
1 |
190,896,018 (GRCm39) |
missense |
probably benign |
0.01 |
|
R1900:Garin4
|
UTSW |
1 |
190,896,631 (GRCm39) |
missense |
possibly damaging |
0.76 |
|
R2939:Garin4
|
UTSW |
1 |
190,896,103 (GRCm39) |
missense |
possibly damaging |
0.54 |
|
R3747:Garin4
|
UTSW |
1 |
190,896,207 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4133:Garin4
|
UTSW |
1 |
190,895,205 (GRCm39) |
missense |
probably benign |
0.05 |
|
R6038:Garin4
|
UTSW |
1 |
190,894,919 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R6038:Garin4
|
UTSW |
1 |
190,894,919 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R7179:Garin4
|
UTSW |
1 |
190,896,218 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7182:Garin4
|
UTSW |
1 |
190,895,548 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7261:Garin4
|
UTSW |
1 |
190,896,308 (GRCm39) |
missense |
unknown |
|
|
R7326:Garin4
|
UTSW |
1 |
190,896,550 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7363:Garin4
|
UTSW |
1 |
190,895,910 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7960:Garin4
|
UTSW |
1 |
190,895,645 (GRCm39) |
missense |
probably benign |
0.02 |
|
R8120:Garin4
|
UTSW |
1 |
190,895,022 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8916:Garin4
|
UTSW |
1 |
190,895,857 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9011:Garin4
|
UTSW |
1 |
190,895,258 (GRCm39) |
missense |
probably benign |
0.08 |
|
R9090:Garin4
|
UTSW |
1 |
190,895,153 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9165:Garin4
|
UTSW |
1 |
190,895,258 (GRCm39) |
missense |
probably benign |
0.04 |
|
R9189:Garin4
|
UTSW |
1 |
190,894,900 (GRCm39) |
missense |
possibly damaging |
0.65 |
|
R9271:Garin4
|
UTSW |
1 |
190,895,153 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1176:Garin4
|
UTSW |
1 |
190,895,942 (GRCm39) |
missense |
probably benign |
0.03 |
|
| Predicted Primers |
|
| Posted On |
2017-05-15 |
Incidental Mutation