Mutagenetix > Incidental Mutation

Incidental Mutation 'R6004:Gpx6'

478531

Institutional Source

Beutler Lab

Gene Symbol

Gpx6

Ensembl Gene

ENSMUSG00000004341

Gene Name

glutathione peroxidase 6

Synonyms

1700020G18Rik, olfactory

MMRRC Submission

044182-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R6004 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

21496295-21503794 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 21503239 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Proline at position 218 (T218P)

Ref Sequence

ENSEMBL: ENSMUSP00000004453 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000004453]

AlphaFold

Q91WR8

Predicted Effect

probably benign
Transcript: ENSMUST00000004453
AA Change: T218P

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000004453
Gene: ENSMUSG00000004341
AA Change: T218P

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
Pfam:GSHPx	40	153	1.2e-43	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000136668

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.8%
3x: 99.4%
10x: 96.8%
20x: 89.1%

Validation Efficiency

98% (55/56)

MGI Phenotype

FUNCTION: This gene encodes a member of the glutathione peroxidase family. Glutathione peroxidases catalyze the reduction of a variety of hydroperoxides, using glutathione as a specific electron donor substrate. The mouse and the rat orthologs contain Cys, unlike their human counterpart, which is a selenoprotein containing Sec (selenocysteine) at its active site. Expression of this gene is restricted to embryos and adult olfactory epithelium. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 56 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acp6	C	T	3: 97,082,997 (GRCm39)	A336V	probably benign	Het
Adam5	T	A	8: 25,271,685 (GRCm39)	Y574F	probably benign	Het
Arl6	A	T	16: 59,444,257 (GRCm39)	W80R	probably damaging	Het
Bmal1	A	T	7: 112,879,934 (GRCm39)	D22V	probably damaging	Het
Cars2	A	G	8: 11,597,743 (GRCm39)	I111T	probably damaging	Het
Chrd	T	C	16: 20,553,987 (GRCm39)	L317S	possibly damaging	Het
Cyp4a12b	A	G	4: 115,290,664 (GRCm39)	D262G	probably benign	Het
Dcaf6	A	G	1: 165,216,254 (GRCm39)	S450P	probably benign	Het
Dnah3	T	C	7: 119,685,520 (GRCm39)	D164G	probably benign	Het
Htr1f	T	C	16: 64,746,239 (GRCm39)	N351S	probably damaging	Het
Idua	A	G	5: 108,828,510 (GRCm39)	E241G	probably benign	Het
Ighv14-2	T	A	12: 113,958,255 (GRCm39)	Q62L	probably damaging	Het
Ighv1-65	C	T	12: 115,496,056 (GRCm39)		noncoding transcript	Het
Inpp4a	T	C	1: 37,411,451 (GRCm39)	S372P	probably damaging	Het
Itgax	A	T	7: 127,730,624 (GRCm39)	H114L	probably damaging	Het
Lama2	A	T	10: 27,111,781 (GRCm39)	F746L	probably benign	Het
Lrrc37a	C	T	11: 103,393,362 (GRCm39)	V688M	possibly damaging	Het
Ltbp2	A	G	12: 84,922,923 (GRCm39)	V28A	probably benign	Het
Mill2	A	T	7: 18,590,463 (GRCm39)	D166V	probably benign	Het
Mroh2a	G	A	1: 88,176,377 (GRCm39)	C982Y	probably damaging	Het
Msh3	T	A	13: 92,478,922 (GRCm39)		probably null	Het
Myh15	A	T	16: 48,980,062 (GRCm39)	M1395L	probably benign	Het
Npepps	T	C	11: 97,113,950 (GRCm39)	E642G	probably benign	Het
Nrg4	T	C	9: 55,166,667 (GRCm39)	T68A	possibly damaging	Het
Or10ag60	T	A	2: 87,438,253 (GRCm39)	F174I	probably damaging	Het
Or4b1d	T	C	2: 89,969,343 (GRCm39)	N47D	probably benign	Het
Or4f60	G	T	2: 111,902,371 (GRCm39)	L186I	probably damaging	Het
Or6c66b	T	A	10: 129,376,759 (GRCm39)	Y118N	probably benign	Het
Or8b41	A	G	9: 38,055,256 (GRCm39)	K270R	probably damaging	Het
Or9g20	A	T	2: 85,629,726 (GRCm39)	V296E	probably damaging	Het
Otogl	T	A	10: 107,715,390 (GRCm39)	I429F	probably damaging	Het
Pank4	G	T	4: 155,061,678 (GRCm39)	G532C	probably damaging	Het
Plce1	A	G	19: 38,710,315 (GRCm39)	T1150A	probably damaging	Het
Ppp2r2b	T	C	18: 43,192,224 (GRCm39)		probably null	Het
Prkrip1	A	G	5: 136,226,636 (GRCm39)	M68T	probably damaging	Het
Psme4	T	A	11: 30,806,896 (GRCm39)		probably benign	Het
Raet1d	T	A	10: 22,247,293 (GRCm39)	I123N	probably damaging	Het
Rp1	T	G	1: 4,267,808 (GRCm39)	T825P	unknown	Het
Rttn	T	C	18: 89,039,816 (GRCm39)	I839T	probably damaging	Het
Sgo2b	G	A	8: 64,379,707 (GRCm39)	Q1042*	probably null	Het
Skint11	A	G	4: 114,088,925 (GRCm39)	T240A	probably benign	Het
Speg	A	T	1: 75,392,247 (GRCm39)	K1382*	probably null	Het
Srsf7	A	T	17: 80,513,282 (GRCm39)	D68E	probably damaging	Het
Stag3	A	T	5: 138,287,468 (GRCm39)	D131V	probably damaging	Het
Strip2	T	A	6: 29,926,570 (GRCm39)	C152S	probably damaging	Het
Timm44	G	T	8: 4,317,747 (GRCm39)	D191E	probably benign	Het
Tlnrd1	A	G	7: 83,531,987 (GRCm39)	V148A	probably damaging	Het
Trp63	T	C	16: 25,582,146 (GRCm39)		probably null	Het
Tusc3	G	C	8: 39,538,560 (GRCm39)	G200R	probably damaging	Het
Vmn2r10	T	G	5: 109,146,944 (GRCm39)	N448T	probably benign	Het
Vmn2r50	G	A	7: 9,783,986 (GRCm39)	R163C	probably benign	Het
Vmn2r53	T	C	7: 12,316,328 (GRCm39)	H497R	probably benign	Het
Vps39	A	G	2: 120,176,131 (GRCm39)	V83A	possibly damaging	Het
Ylpm1	A	T	12: 85,075,858 (GRCm39)	N861I	possibly damaging	Het
Zfp712	A	G	13: 67,189,769 (GRCm39)	C253R	probably damaging	Het
Zfp930	A	G	8: 69,680,556 (GRCm39)	T84A	probably benign	Het

Other mutations in Gpx6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00674:Gpx6	APN	13	21,497,978 (GRCm39)	splice site	probably benign
Jaded	UTSW	13	21,501,828 (GRCm39)	missense	probably damaging	1.00
R0648:Gpx6	UTSW	13	21,503,047 (GRCm39)	missense	probably benign	0.44
R0835:Gpx6	UTSW	13	21,501,238 (GRCm39)	missense	probably damaging	1.00
R1496:Gpx6	UTSW	13	21,503,090 (GRCm39)	missense	probably benign
R1538:Gpx6	UTSW	13	21,497,822 (GRCm39)	missense	possibly damaging	0.82
R1839:Gpx6	UTSW	13	21,496,497 (GRCm39)	missense	probably benign
R2151:Gpx6	UTSW	13	21,503,141 (GRCm39)	missense	probably damaging	1.00
R2845:Gpx6	UTSW	13	21,503,045 (GRCm39)	critical splice acceptor site	probably null
R3785:Gpx6	UTSW	13	21,497,956 (GRCm39)	missense	probably benign	0.02
R3973:Gpx6	UTSW	13	21,501,828 (GRCm39)	missense	probably damaging	1.00
R3974:Gpx6	UTSW	13	21,501,828 (GRCm39)	missense	probably damaging	1.00
R3975:Gpx6	UTSW	13	21,501,828 (GRCm39)	missense	probably damaging	1.00
R4124:Gpx6	UTSW	13	21,501,815 (GRCm39)	nonsense	probably null
R4707:Gpx6	UTSW	13	21,496,434 (GRCm39)	nonsense	probably null
R4751:Gpx6	UTSW	13	21,501,234 (GRCm39)	missense	probably damaging	1.00
R4784:Gpx6	UTSW	13	21,496,434 (GRCm39)	nonsense	probably null
R4785:Gpx6	UTSW	13	21,496,434 (GRCm39)	nonsense	probably null
R5002:Gpx6	UTSW	13	21,497,858 (GRCm39)	missense	probably damaging	1.00
R5403:Gpx6	UTSW	13	21,501,813 (GRCm39)	missense	probably damaging	1.00
R6030:Gpx6	UTSW	13	21,496,510 (GRCm39)	missense	probably benign	0.01
R6030:Gpx6	UTSW	13	21,496,510 (GRCm39)	missense	probably benign	0.01
R7223:Gpx6	UTSW	13	21,501,840 (GRCm39)	critical splice donor site	probably null
R9701:Gpx6	UTSW	13	21,501,777 (GRCm39)	missense	probably benign	0.13
X0017:Gpx6	UTSW	13	21,501,209 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GCAGAAATGAGATCATCTTTCCG -3'
(R):5'- ACAAAGCATGCCCAGCTTTG -3'

Sequencing Primer
(F):5'- ATATCTCTGCTCCAGAACTCCTG -3'
(R):5'- ATGCCCAGCTTTGGAGGAG -3'

Posted On

2017-06-26