Incidental Mutation 'R6026:Pdzrn3'
ID 480035
Institutional Source Beutler Lab
Gene Symbol Pdzrn3
Ensembl Gene ENSMUSG00000035357
Gene Name PDZ domain containing RING finger 3
Synonyms 1110020C07Rik, semaphorin cytoplasmic domain-associated protein 3A, LNX3, Semcap3
MMRRC Submission 044198-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.780) question?
Stock # R6026 (G1)
Quality Score 225.009
Status Validated
Chromosome 6
Chromosomal Location 101126570-101354858 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to C at 101339105 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Cysteine to Glycine at position 269 (C269G)
Ref Sequence ENSEMBL: ENSMUSP00000075376 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000075994]
AlphaFold Q69ZS0
Predicted Effect probably benign
Transcript: ENSMUST00000075994
AA Change: C269G

PolyPhen 2 Score 0.404 (Sensitivity: 0.89; Specificity: 0.89)
SMART Domains Protein: ENSMUSP00000075376
Gene: ENSMUSG00000035357
AA Change: C269G

DomainStartEndE-ValueType
RING 18 55 3.93e-3 SMART
low complexity region 198 214 N/A INTRINSIC
PDZ 257 339 3.38e-21 SMART
PDZ 429 504 3.86e-16 SMART
low complexity region 512 526 N/A INTRINSIC
low complexity region 660 671 N/A INTRINSIC
low complexity region 1020 1029 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000151175
SMART Domains Protein: ENSMUSP00000117666
Gene: ENSMUSG00000035357

DomainStartEndE-ValueType
low complexity region 16 32 N/A INTRINSIC
PDZ 75 149 5.14e-3 SMART
Meta Mutation Damage Score 0.0898 question?
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 97.9%
  • 20x: 93.5%
Validation Efficiency 97% (73/75)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the LNX (Ligand of Numb Protein-X) family of RING-type ubiquitin E3 ligases. This protein may function in vascular morphogenesis and the differentiation of adipocytes, osteoblasts and myoblasts. This protein may be targeted for degradation by the human papilloma virus E6 protein. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2014]
Allele List at MGI
Other mutations in this stock
Total: 74 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1810065E05Rik A G 11: 58,316,581 (GRCm39) D187G probably benign Het
4933421I07Rik A T 7: 42,095,708 (GRCm39) M180K probably benign Het
Aatk T C 11: 119,903,190 (GRCm39) H345R possibly damaging Het
Abcc8 T C 7: 45,816,424 (GRCm39) T239A probably benign Het
Abcf3 A G 16: 20,369,320 (GRCm39) E234G probably damaging Het
Actrt2 T C 4: 154,751,047 (GRCm39) D363G possibly damaging Het
Adam1a A T 5: 121,657,425 (GRCm39) C623S probably damaging Het
Afg3l2 G T 18: 67,554,329 (GRCm39) L458M probably damaging Het
Ash1l T C 3: 88,892,326 (GRCm39) Y1402H probably damaging Het
Barhl2 T A 5: 106,603,474 (GRCm39) K228N probably benign Het
Blvrb A G 7: 27,162,115 (GRCm39) H153R probably damaging Het
Capn9 A G 8: 125,332,601 (GRCm39) D480G probably damaging Het
Cct3 T C 3: 88,219,029 (GRCm39) I182T possibly damaging Het
Clasp2 A G 9: 113,740,646 (GRCm39) N1208D probably benign Het
Col26a1 A G 5: 136,876,354 (GRCm39) C89R probably damaging Het
Cops4 T A 5: 100,690,194 (GRCm39) probably benign Het
Cpox T A 16: 58,491,298 (GRCm39) W170R probably damaging Het
Ddx27 A G 2: 166,875,560 (GRCm39) K656E probably benign Het
Eif4e T C 3: 138,256,661 (GRCm39) I66T probably damaging Het
Ercc3 T C 18: 32,378,974 (GRCm39) probably null Het
Esp38 G A 17: 40,266,032 (GRCm39) C47Y probably damaging Het
Fancd2 T C 6: 113,528,731 (GRCm39) V380A possibly damaging Het
Fbxw7 T A 3: 84,859,948 (GRCm39) probably null Het
Fryl T G 5: 73,257,340 (GRCm39) R736S probably benign Het
Gad2 G A 2: 22,513,748 (GRCm39) V62M probably benign Het
Gigyf2 A G 1: 87,368,454 (GRCm39) T1045A probably damaging Het
Gm13090 T A 4: 151,175,157 (GRCm39) L78* probably null Het
Gm19410 G A 8: 36,279,580 (GRCm39) S1815N probably benign Het
Gm28051 A T 12: 102,686,444 (GRCm39) L72Q unknown Het
Gm44511 T C 6: 128,797,240 (GRCm39) T83A possibly damaging Het
Grk2 C T 19: 4,340,811 (GRCm39) V246I probably damaging Het
Grm7 C T 6: 111,478,500 (GRCm39) Q62* probably null Het
Gsdmc3 T A 15: 63,738,600 (GRCm39) E154V probably damaging Het
Gstz1 A C 12: 87,206,948 (GRCm39) Q114P probably damaging Het
Hax1 GTCATCATCATCATCATC GTCATCATCATCATCATCATC 3: 89,905,247 (GRCm39) probably benign Het
Hhip A T 8: 80,699,069 (GRCm39) C666S probably damaging Het
Hif1a A C 12: 73,979,055 (GRCm39) H193P probably damaging Het
Hyal2 A G 9: 107,449,398 (GRCm39) T385A probably benign Het
Ihh T C 1: 74,985,886 (GRCm39) T200A probably benign Het
Iqgap3 T A 3: 87,997,478 (GRCm39) V218E probably damaging Het
Lct A G 1: 128,227,755 (GRCm39) I1246T probably benign Het
Lmo7 T C 14: 102,118,426 (GRCm39) V217A probably benign Het
Lrp1 C T 10: 127,409,272 (GRCm39) D1616N probably damaging Het
Lrrfip2 A T 9: 111,043,239 (GRCm39) T165S probably damaging Het
Morc2b A G 17: 33,356,957 (GRCm39) Y272H possibly damaging Het
Muc16 A G 9: 18,571,154 (GRCm39) M455T unknown Het
Ncapg2 A T 12: 116,406,641 (GRCm39) D939V possibly damaging Het
Ncbp3 T C 11: 72,958,548 (GRCm39) V236A probably benign Het
Obscn T A 11: 58,957,916 (GRCm39) T3595S probably damaging Het
Odf2l T C 3: 144,854,797 (GRCm39) S545P possibly damaging Het
Or3a1 T A 11: 74,225,914 (GRCm39) I48F probably damaging Het
Or8b36 ATTGCTGTTT ATTGCTGTTTGCTGTTT 9: 37,937,836 (GRCm39) probably null Het
Pear1 T A 3: 87,664,220 (GRCm39) N278Y probably damaging Het
Phb1 C T 11: 95,562,245 (GRCm39) R41* probably null Het
Pikfyve T C 1: 65,311,856 (GRCm39) V2031A probably damaging Het
Plxna2 A G 1: 194,482,122 (GRCm39) I1465V probably damaging Het
Ppp6r2 A G 15: 89,167,113 (GRCm39) N776S probably benign Het
Prkce A T 17: 86,800,658 (GRCm39) E358V probably benign Het
Prl5a1 A T 13: 28,335,247 (GRCm39) I219F probably benign Het
Prss3 T C 6: 41,354,488 (GRCm39) probably null Het
Ptprc A T 1: 137,998,987 (GRCm39) M858K probably damaging Het
Retreg3 T C 11: 100,997,226 (GRCm39) T85A probably damaging Het
Rfc2 T A 5: 134,624,185 (GRCm39) C265S probably damaging Het
Smarcd1 G T 15: 99,603,619 (GRCm39) V256L probably damaging Het
Stat5a T C 11: 100,771,142 (GRCm39) F574L probably damaging Het
Tcirg1 T C 19: 3,947,487 (GRCm39) H624R probably benign Het
Tcstv1a C A 13: 120,355,987 (GRCm39) probably benign Het
Tenm2 C T 11: 35,963,556 (GRCm39) probably null Het
Tomm40 A G 7: 19,444,889 (GRCm39) V164A probably benign Het
Txnl4a T C 18: 80,250,482 (GRCm39) V26A probably damaging Het
Ugt2a3 A T 5: 87,484,336 (GRCm39) F229L probably benign Het
Utp20 T C 10: 88,604,541 (GRCm39) T1785A probably benign Het
Vmn1r22 T A 6: 57,877,390 (GRCm39) I196L probably benign Het
Zfp652 T G 11: 95,640,788 (GRCm39) C238G possibly damaging Het
Other mutations in Pdzrn3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00984:Pdzrn3 APN 6 101,331,447 (GRCm39) missense probably benign 0.01
IGL01511:Pdzrn3 APN 6 101,130,217 (GRCm39) missense possibly damaging 0.66
IGL01554:Pdzrn3 APN 6 101,127,502 (GRCm39) missense probably damaging 1.00
IGL02450:Pdzrn3 APN 6 101,331,461 (GRCm39) missense probably damaging 1.00
IGL02505:Pdzrn3 APN 6 101,128,899 (GRCm39) missense possibly damaging 0.94
IGL03061:Pdzrn3 APN 6 101,128,816 (GRCm39) missense probably damaging 1.00
IGL03210:Pdzrn3 APN 6 101,133,913 (GRCm39) missense possibly damaging 0.95
gefilte UTSW 6 101,131,153 (GRCm39) critical splice donor site probably null
implevit_bonis UTSW 6 101,127,983 (GRCm39) missense probably benign 0.15
predisposition UTSW 6 101,128,014 (GRCm39) missense probably damaging 1.00
tendency UTSW 6 101,128,389 (GRCm39) missense probably damaging 1.00
PIT4581001:Pdzrn3 UTSW 6 101,128,464 (GRCm39) missense probably benign 0.00
R0110:Pdzrn3 UTSW 6 101,128,014 (GRCm39) missense probably damaging 1.00
R0469:Pdzrn3 UTSW 6 101,128,014 (GRCm39) missense probably damaging 1.00
R0496:Pdzrn3 UTSW 6 101,127,531 (GRCm39) missense possibly damaging 0.94
R0510:Pdzrn3 UTSW 6 101,128,014 (GRCm39) missense probably damaging 1.00
R0883:Pdzrn3 UTSW 6 101,132,903 (GRCm39) splice site probably null
R1171:Pdzrn3 UTSW 6 101,127,838 (GRCm39) missense probably damaging 1.00
R1471:Pdzrn3 UTSW 6 101,128,473 (GRCm39) missense possibly damaging 0.77
R1496:Pdzrn3 UTSW 6 101,127,930 (GRCm39) missense probably benign 0.00
R1596:Pdzrn3 UTSW 6 101,127,966 (GRCm39) missense probably benign 0.03
R2033:Pdzrn3 UTSW 6 101,127,915 (GRCm39) missense probably damaging 1.00
R2068:Pdzrn3 UTSW 6 101,127,660 (GRCm39) missense probably damaging 1.00
R2084:Pdzrn3 UTSW 6 101,131,256 (GRCm39) missense probably benign 0.35
R2432:Pdzrn3 UTSW 6 101,127,752 (GRCm39) missense probably damaging 1.00
R3727:Pdzrn3 UTSW 6 101,133,906 (GRCm39) missense probably damaging 0.98
R3861:Pdzrn3 UTSW 6 101,149,332 (GRCm39) missense possibly damaging 0.95
R4616:Pdzrn3 UTSW 6 101,128,970 (GRCm39) missense probably damaging 0.99
R4967:Pdzrn3 UTSW 6 101,128,551 (GRCm39) missense probably damaging 1.00
R5224:Pdzrn3 UTSW 6 101,130,272 (GRCm39) missense probably damaging 1.00
R5226:Pdzrn3 UTSW 6 101,130,272 (GRCm39) missense probably damaging 1.00
R5227:Pdzrn3 UTSW 6 101,130,272 (GRCm39) missense probably damaging 1.00
R5230:Pdzrn3 UTSW 6 101,130,272 (GRCm39) missense probably damaging 1.00
R5320:Pdzrn3 UTSW 6 101,128,064 (GRCm39) missense probably damaging 1.00
R5414:Pdzrn3 UTSW 6 101,130,272 (GRCm39) missense probably damaging 1.00
R5686:Pdzrn3 UTSW 6 101,128,389 (GRCm39) missense probably damaging 1.00
R5772:Pdzrn3 UTSW 6 101,149,275 (GRCm39) missense probably benign 0.00
R6213:Pdzrn3 UTSW 6 101,354,805 (GRCm39) missense probably damaging 1.00
R6518:Pdzrn3 UTSW 6 101,127,475 (GRCm39) makesense probably null
R6657:Pdzrn3 UTSW 6 101,127,983 (GRCm39) missense probably benign 0.15
R6951:Pdzrn3 UTSW 6 101,131,153 (GRCm39) critical splice donor site probably null
R7055:Pdzrn3 UTSW 6 101,128,735 (GRCm39) nonsense probably null
R7290:Pdzrn3 UTSW 6 101,128,206 (GRCm39) missense probably benign
R7608:Pdzrn3 UTSW 6 101,128,713 (GRCm39) missense probably damaging 1.00
R7834:Pdzrn3 UTSW 6 101,128,156 (GRCm39) missense probably damaging 0.97
R8199:Pdzrn3 UTSW 6 101,128,918 (GRCm39) missense probably damaging 1.00
R8338:Pdzrn3 UTSW 6 101,127,783 (GRCm39) missense probably benign 0.00
R8734:Pdzrn3 UTSW 6 101,128,567 (GRCm39) missense probably damaging 0.98
R8783:Pdzrn3 UTSW 6 101,132,841 (GRCm39) missense probably damaging 1.00
R9082:Pdzrn3 UTSW 6 101,146,094 (GRCm39) critical splice donor site probably null
R9378:Pdzrn3 UTSW 6 101,127,772 (GRCm39) missense probably damaging 1.00
R9499:Pdzrn3 UTSW 6 101,127,855 (GRCm39) missense probably damaging 1.00
R9542:Pdzrn3 UTSW 6 101,149,235 (GRCm39) missense probably benign 0.00
R9551:Pdzrn3 UTSW 6 101,127,855 (GRCm39) missense probably damaging 1.00
R9639:Pdzrn3 UTSW 6 101,146,172 (GRCm39) missense probably benign 0.00
R9743:Pdzrn3 UTSW 6 101,354,678 (GRCm39) missense probably damaging 1.00
Z1176:Pdzrn3 UTSW 6 101,128,960 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- CTGATCAACATGAACAGCCCTG -3'
(R):5'- GTTTCCTTGGCCAAACTTCTCAAG -3'

Sequencing Primer
(F):5'- CATGAACAGCCCTGAGTGTG -3'
(R):5'- GCAATTAGCTCCATAGTCTTGAGTC -3'
Posted On 2017-06-26